Wall clock time and date at job start Sat Mar 6 2021 15:02:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.35901 * 116.99797 * 2 1
4 4 C 1.38712 * 120.05576 * 359.97438 * 3 2 1
5 5 C 1.38169 * 119.94226 * 180.02562 * 4 3 2
6 6 C 1.38237 * 120.05932 * 359.74977 * 5 4 3
7 7 C 1.38288 * 120.10920 * 0.50683 * 6 5 4
8 8 C 1.50703 * 119.97391 * 179.76909 * 7 6 5
9 9 H 1.08999 * 112.84997 * 168.53575 * 8 7 6
10 10 C 1.53785 * 113.61227 * 299.72568 * 8 7 6
11 11 C 1.53771 * 87.08292 * 140.06554 * 10 8 7
12 12 H 1.08998 * 113.61798 * 219.93869 * 11 10 8
13 13 N 1.46497 * 113.61669 * 89.11355 * 11 10 8
14 14 C 1.46500 * 120.00091 * 246.01984 * 13 11 10
15 15 C 1.34776 * 120.00072 * 66.01980 * 13 11 10
16 16 O 1.21288 * 119.99758 * 0.02562 * 15 13 11
17 17 C 1.50702 * 120.00303 * 180.02562 * 15 13 11
18 18 O 1.42900 * 109.47072 * 179.97438 * 17 15 13
19 19 C 1.35907 * 116.99819 * 179.97438 * 18 17 15
20 20 C 1.38707 * 120.05250 * 179.97438 * 19 18 17
21 21 C 1.38162 * 119.94234 * 180.02562 * 20 19 18
22 22 C 1.50700 * 119.97507 * 179.97438 * 21 20 19
23 23 O 1.42900 * 109.47192 * 300.00148 * 22 21 20
24 24 Si 1.86297 * 109.47385 * 180.02562 * 22 21 20
25 25 C 1.38245 * 120.05586 * 0.25420 * 21 20 19
26 26 C 1.38289 * 120.10978 * 359.49294 * 25 21 20
27 27 C 1.38124 * 120.05617 * 0.50803 * 26 25 21
28 28 C 1.53785 * 87.17184 * 334.52565 * 11 10 8
29 29 C 1.38123 * 120.05719 * 359.49220 * 7 6 5
30 30 H 1.09000 * 109.47285 * 299.99997 * 1 2 3
31 31 H 1.09004 * 109.47550 * 60.00175 * 1 2 3
32 32 H 1.09001 * 109.47224 * 180.02562 * 1 2 3
33 33 H 1.08001 * 120.02876 * 0.04637 * 4 3 2
34 34 H 1.08003 * 119.96557 * 180.02562 * 5 4 3
35 35 H 1.07996 * 119.94926 * 180.25390 * 6 5 4
36 36 H 1.08997 * 113.61628 * 25.51232 * 10 8 7
37 37 H 1.09003 * 113.61232 * 254.61515 * 10 8 7
38 38 H 1.08996 * 109.47620 * 275.33776 * 14 13 11
39 39 H 1.09002 * 109.47411 * 35.34361 * 14 13 11
40 40 H 1.09008 * 109.47286 * 155.33997 * 14 13 11
41 41 H 1.08997 * 109.47119 * 59.99959 * 17 15 13
42 42 H 1.09000 * 109.47114 * 300.00059 * 17 15 13
43 43 H 1.08003 * 120.03062 * 0.05284 * 20 19 18
44 44 H 1.09006 * 109.47319 * 59.99673 * 22 21 20
45 45 H 0.96699 * 113.99679 * 300.00004 * 23 22 21
46 46 H 1.48493 * 110.00434 * 58.67786 * 24 22 21
47 47 H 1.48500 * 110.00042 * 180.02562 * 24 22 21
48 48 H 1.07999 * 119.94610 * 179.72309 * 25 21 20
49 49 H 1.07999 * 119.96982 * 180.23008 * 26 25 21
50 50 H 1.07994 * 120.02868 * 179.76771 * 27 26 25
51 51 H 1.09000 * 113.61153 * 140.02539 * 28 11 10
52 52 H 1.08997 * 113.61431 * 270.92629 * 28 11 10
53 53 H 1.07998 * 120.03369 * 180.22715 * 29 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2109 0.0000
4 6 1.2915 2.3750 -0.0005
5 6 1.9212 3.6048 -0.0011
6 6 3.3017 3.6759 0.0042
7 6 4.0561 2.5169 -0.0007
8 6 5.5609 2.5980 -0.0002
9 1 6.0365 1.6370 0.1954
10 6 6.1385 3.3340 -1.2207
11 6 7.1529 3.9721 -0.2573
12 1 7.3508 5.0236 -0.4652
13 7 8.3772 3.1854 -0.0886
14 6 8.6860 2.5803 1.2094
15 6 9.2193 3.0182 -1.1275
16 8 8.9639 3.5196 -2.2019
17 6 10.4784 2.2085 -0.9541
18 8 11.1983 2.1771 -2.1882
19 6 12.3668 1.4832 -2.2034
20 6 13.1166 1.4109 -3.3681
21 6 14.3039 0.7044 -3.3811
22 6 15.1188 0.6248 -4.6462
23 8 14.3407 0.0119 -5.6763
24 14 16.6489 -0.3918 -4.3365
25 6 14.7421 0.0657 -2.2361
26 6 13.9990 0.1407 -1.0722
27 6 12.8113 0.8456 -1.0540
28 6 6.1186 3.7489 0.8586
29 6 3.4315 1.2850 -0.0001
30 1 -0.3634 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3634 -1.0277 0.0005
33 1 0.2129 2.3200 -0.0002
34 1 1.3342 4.5114 -0.0011
35 1 3.7920 4.6382 0.0079
36 1 5.4481 4.0507 -1.6655
37 1 6.5928 2.6700 -1.9562
38 1 9.1880 3.3128 1.8415
39 1 7.7618 2.2586 1.6895
40 1 9.3382 1.7192 1.0629
41 1 10.2188 1.1917 -0.6594
42 1 11.0994 2.6631 -0.1823
43 1 12.7728 1.9067 -4.2639
44 1 15.4063 1.6293 -4.9571
45 1 14.0495 -0.8862 -5.4675
46 1 16.2703 -1.7538 -3.8818
47 1 17.4615 -0.4774 -5.5765
48 1 15.6682 -0.4898 -2.2495
49 1 14.3453 -0.3561 -0.1780
50 1 12.2295 0.9008 -0.1459
51 1 6.5569 3.4197 1.8007
52 1 5.4228 4.5788 0.9814
53 1 4.0210 0.3801 -0.0001
There are 71 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 71
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_10860584_4860298.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Mar 6 2021 15:02:27
Heat of formation + Delta-G solvation = -34.354055 kcal
Electronic energy + Delta-G solvation = -34217.493285 eV
Core-core repulsion = 29602.466966 eV
Total energy + Delta-G solvation = -4615.026318 eV
No. of doubly occupied orbitals = 71
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 384.182 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-42.04352 -41.38299 -40.88387 -39.76642 -38.91724 -37.94077 -37.33596 -35.63633
-32.49940 -32.32027 -31.67150 -31.05760 -29.33114 -28.44734 -28.24096 -26.88393
-26.48074 -25.58932 -23.68332 -23.63241 -23.04380 -22.13103 -21.10722 -19.65603
-19.35227 -18.88665 -18.25757 -17.81274 -17.62380 -17.34184 -17.26706 -17.12203
-16.91882 -16.71098 -16.68302 -16.44349 -16.19015 -15.68595 -15.48381 -15.26226
-14.91028 -14.69221 -14.47233 -14.21561 -14.13189 -14.12423 -14.04226 -13.93309
-13.71786 -13.48081 -13.26646 -13.04414 -13.00622 -12.87448 -12.63003 -12.58143
-12.33879 -12.13134 -12.03871 -11.99227 -11.68721 -11.61338 -11.58115 -11.45418
-10.88850 -10.69298 -9.93450 -9.81084 -9.72390 -9.29689 -9.18597 -4.91142
0.19996 0.29319 0.38711 0.44878 1.26180 1.38732 1.40427 1.62006
1.96463 2.32206 2.41824 2.66193 2.70293 3.22649 3.39334 3.43373
3.58597 3.65188 3.66380 3.79539 3.85149 3.91011 3.93237 4.00532
4.04483 4.11971 4.15028 4.21368 4.24551 4.25000 4.32426 4.34843
4.36035 4.50056 4.53519 4.54315 4.59381 4.62872 4.63692 4.68073
4.73453 4.84047 4.87651 4.94686 4.98086 5.02765 5.05876 5.16888
5.24120 5.31212 5.36577 5.44116 5.45603 5.51051 5.66016 5.70609
5.79914 6.14477 6.34591 6.40762 6.45171 6.99238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 O -0.341 6.341
3 C 0.110 3.890
4 C -0.221 4.221
5 C -0.082 4.082
6 C -0.158 4.158
7 C -0.035 4.035
8 C -0.065 4.065
9 H 0.101 0.899
10 C -0.135 4.135
11 C 0.120 3.880
12 H 0.080 0.920
13 N -0.592 5.592
14 C 0.052 3.948
15 C 0.509 3.491
16 O -0.568 6.568
17 C 0.042 3.958
18 O -0.324 6.324
19 C 0.112 3.888
20 C -0.150 4.150
21 C -0.082 4.082
22 C -0.096 4.096
23 O -0.552 6.552
24 Si 0.787 3.213
25 C -0.157 4.157
26 C -0.069 4.069
27 C -0.202 4.202
28 C -0.118 4.118
29 C -0.168 4.168
30 H 0.065 0.935
31 H 0.062 0.938
32 H 0.115 0.885
33 H 0.141 0.859
34 H 0.146 0.854
35 H 0.143 0.857
36 H 0.093 0.907
37 H 0.048 0.952
38 H 0.082 0.918
39 H 0.095 0.905
40 H 0.095 0.905
41 H 0.122 0.878
42 H 0.125 0.875
43 H 0.110 0.890
44 H 0.119 0.881
45 H 0.386 0.614
46 H -0.276 1.276
47 H -0.305 1.305
48 H 0.150 0.850
49 H 0.165 0.835
50 H 0.160 0.840
51 H 0.105 0.895
52 H 0.113 0.887
53 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.235 -1.146 11.482 11.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 O -0.255 6.255
3 C 0.065 3.935
4 C -0.240 4.240
5 C -0.100 4.100
6 C -0.176 4.176
7 C -0.035 4.035
8 C -0.083 4.083
9 H 0.119 0.881
10 C -0.173 4.173
11 C 0.016 3.984
12 H 0.098 0.902
13 N -0.326 5.326
14 C -0.089 4.089
15 C 0.296 3.704
16 O -0.447 6.447
17 C -0.036 4.036
18 O -0.238 6.238
19 C 0.067 3.933
20 C -0.169 4.169
21 C -0.082 4.082
22 C -0.203 4.203
23 O -0.360 6.360
24 Si 0.691 3.309
25 C -0.174 4.174
26 C -0.087 4.087
27 C -0.220 4.220
28 C -0.155 4.155
29 C -0.187 4.187
30 H 0.084 0.916
31 H 0.080 0.920
32 H 0.133 0.867
33 H 0.158 0.842
34 H 0.163 0.837
35 H 0.161 0.839
36 H 0.112 0.888
37 H 0.067 0.933
38 H 0.100 0.900
39 H 0.113 0.887
40 H 0.113 0.887
41 H 0.139 0.861
42 H 0.143 0.857
43 H 0.128 0.872
44 H 0.137 0.863
45 H 0.235 0.765
46 H -0.202 1.202
47 H -0.234 1.234
48 H 0.167 0.833
49 H 0.182 0.818
50 H 0.178 0.822
51 H 0.123 0.877
52 H 0.131 0.869
53 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges 0.609 -1.103 10.284 10.361
hybrid contribution -1.632 -0.472 -1.029 1.986
sum -1.024 -1.575 9.256 9.444
Atomic orbital electron populations
1.23299 0.76583 1.05403 1.02158 1.86039 1.23357 1.27345 1.88792
1.19279 0.92729 0.84725 0.96780 1.21501 1.00962 0.92384 1.09137
1.21262 0.94973 0.97572 0.96191 1.21178 0.93815 0.98680 1.03968
1.19609 0.95382 0.91980 0.96514 1.21602 0.89903 0.99654 0.97189
0.88092 1.23294 0.97862 0.99851 0.96311 1.21913 0.83422 0.94709
0.98340 0.90203 1.47559 1.20957 1.52317 1.11786 1.22382 1.03974
0.99528 0.82980 1.20550 0.85028 0.81021 0.83757 1.90758 1.75837
1.50174 1.27902 1.22762 0.91548 1.02525 0.86721 1.86127 1.32936
1.69407 1.35326 1.19219 0.85612 0.93128 0.95315 1.20281 0.96005
1.03810 0.96801 1.20137 0.94701 0.97047 0.96350 1.25500 1.02295
1.05883 0.86656 1.86580 1.72136 1.34307 1.42967 0.93881 0.76062
0.78492 0.82469 1.21226 1.01492 1.01911 0.92771 1.21342 0.92717
0.95854 0.98758 1.21626 1.00219 1.02406 0.97747 1.23497 0.96175
0.98526 0.97307 1.20478 0.91563 0.98778 1.07848 0.91634 0.91964
0.86685 0.84155 0.83659 0.83946 0.88830 0.93310 0.89980 0.88704
0.88653 0.86082 0.85741 0.87189 0.86313 0.76479 1.20235 1.23362
0.83272 0.81796 0.82226 0.87653 0.86873 0.85578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16
2 O -0.34 -2.13 10.50 -92.44 -0.97 -3.10 16
3 C 0.11 0.66 6.69 22.51 0.15 0.81 16
4 C -0.22 -0.59 9.04 22.37 0.20 -0.39 16
5 C -0.08 -0.05 10.04 22.25 0.22 0.18 16
6 C -0.16 -0.03 8.62 22.28 0.19 0.16 16
7 C -0.03 -0.06 5.29 -19.88 -0.11 -0.17 16
8 C -0.07 0.10 3.75 -10.92 -0.04 0.06 16
9 H 0.10 -0.22 7.98 -2.39 -0.02 -0.24 16
10 C -0.13 -0.37 6.90 31.12 0.21 -0.15 16
11 C 0.12 -0.07 4.08 45.52 0.19 0.11 16
12 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16
13 N -0.59 1.06 3.01 -819.65 -2.47 -1.40 16
14 C 0.05 -0.58 9.73 127.77 1.24 0.66 16
15 C 0.51 2.68 7.46 87.66 0.65 3.33 16
16 O -0.57 -9.55 15.69 15.98 0.25 -9.30 16
17 C 0.04 -0.04 3.70 71.24 0.26 0.22 16
18 O -0.32 -2.75 9.67 -73.47 -0.71 -3.46 16
19 C 0.11 0.58 6.69 22.50 0.15 0.73 16
20 C -0.15 -1.11 9.55 22.36 0.21 -0.90 16
21 C -0.08 -0.22 5.39 -19.88 -0.11 -0.33 16
22 C -0.10 -0.21 2.82 71.24 0.20 -0.01 16
23 O -0.55 -3.43 12.77 -148.98 -1.90 -5.33 16
24 Si 0.79 -1.31 29.79 68.60 2.04 0.73 16
25 C -0.16 0.31 8.67 22.28 0.19 0.51 16
26 C -0.07 0.30 10.04 22.25 0.22 0.52 16
27 C -0.20 0.47 9.04 22.37 0.20 0.67 16
28 C -0.12 0.71 6.59 31.21 0.21 0.92 16
29 C -0.17 -0.85 9.65 22.37 0.22 -0.64 16
30 H 0.07 -0.24 7.66 -2.39 -0.02 -0.26 16
31 H 0.06 -0.19 7.66 -2.39 -0.02 -0.21 16
32 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16
33 H 0.14 -0.16 6.30 -2.91 -0.02 -0.17 16
34 H 0.15 -0.58 8.06 -2.91 -0.02 -0.61 16
35 H 0.14 -0.57 6.64 -2.91 -0.02 -0.59 16
36 H 0.09 0.25 7.73 -2.39 -0.02 0.23 16
37 H 0.05 0.44 7.41 -2.39 -0.02 0.42 16
38 H 0.08 -1.11 8.14 -2.39 -0.02 -1.12 16
39 H 0.09 -1.22 5.64 -2.39 -0.01 -1.24 16
40 H 0.09 -1.44 6.25 -2.38 -0.01 -1.45 16
41 H 0.12 -0.89 6.94 -2.39 -0.02 -0.91 16
42 H 0.13 -0.96 7.62 -2.39 -0.02 -0.97 16
43 H 0.11 1.23 8.06 -2.91 -0.02 1.21 16
44 H 0.12 0.19 7.96 -2.38 -0.02 0.17 16
45 H 0.39 0.04 8.70 -74.06 -0.64 -0.61 16
46 H -0.28 -0.28 7.10 99.48 0.71 0.42 16
47 H -0.31 -1.94 7.11 99.48 0.71 -1.23 16
48 H 0.15 -0.98 4.87 -2.91 -0.01 -1.00 16
49 H 0.16 -1.77 8.06 -2.91 -0.02 -1.80 16
50 H 0.16 -1.50 6.30 -2.91 -0.02 -1.52 16
51 H 0.11 -1.04 5.81 -2.39 -0.01 -1.05 16
52 H 0.11 -0.85 6.31 -2.39 -0.02 -0.87 16
53 H 0.13 0.53 8.05 -2.91 -0.02 0.51 16
Total: 0.00 -30.25 423.64 2.38 -27.87
By element:
Atomic # 1 Polarization: -13.74 SS G_CDS: 0.34 Total: -13.39 kcal
Atomic # 6 Polarization: 1.59 SS G_CDS: 5.79 Total: 7.38 kcal
Atomic # 7 Polarization: 1.06 SS G_CDS: -2.47 Total: -1.40 kcal
Atomic # 8 Polarization: -17.86 SS G_CDS: -3.33 Total: -21.19 kcal
Atomic # 14 Polarization: -1.31 SS G_CDS: 2.04 Total: 0.73 kcal
Total: -30.25 2.38 -27.87 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_10860584_4860298.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.488 kcal
(2) G-P(sol) polarization free energy of solvation -30.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.737 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.866 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.354 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds