Wall clock time and date at job start Sat Mar 6 2021 15:03:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35897 * 117.00367 * 2 1
4 4 C 1.38709 * 120.05289 * 359.97438 * 3 2 1
5 5 C 1.38170 * 119.93822 * 180.27546 * 4 3 2
6 6 C 1.38241 * 120.05864 * 359.49150 * 5 4 3
7 7 C 1.38289 * 120.10888 * 0.50712 * 6 5 4
8 8 C 1.50700 * 119.96845 * 179.72906 * 7 6 5
9 9 H 1.09004 * 112.85062 * 168.82936 * 8 7 6
10 10 C 1.53780 * 113.61611 * 300.01652 * 8 7 6
11 11 C 1.53778 * 87.08252 * 139.98171 * 10 8 7
12 12 H 1.08998 * 113.61892 * 220.01598 * 11 10 8
13 13 N 1.46507 * 113.61012 * 89.20217 * 11 10 8
14 14 C 1.46493 * 120.00030 * 300.00102 * 13 11 10
15 15 C 1.34776 * 119.99756 * 119.99689 * 13 11 10
16 16 O 1.21692 * 120.00278 * 0.04032 * 15 13 11
17 17 C 1.46675 * 119.99891 * 180.02562 * 15 13 11
18 18 C 1.37869 * 126.23460 * 189.67250 * 17 15 13
19 19 C 1.39840 * 107.08656 * 179.85073 * 18 17 15
20 20 C 1.35453 * 107.86361 * 0.41774 * 19 18 17
21 21 C 1.50696 * 125.56317 * 179.76076 * 20 19 18
22 22 O 1.42901 * 109.47104 * 119.97878 * 21 20 19
23 23 Si 1.86296 * 109.47425 * 359.97438 * 21 20 19
24 24 N 1.35539 * 108.86830 * 359.74261 * 20 19 18
25 25 C 1.53779 * 87.08149 * 334.56996 * 11 10 8
26 26 C 1.38117 * 120.05729 * 359.74390 * 7 6 5
27 27 H 1.09003 * 109.47445 * 179.97438 * 1 2 3
28 28 H 1.09002 * 109.47122 * 300.00621 * 1 2 3
29 29 H 1.09004 * 109.46384 * 60.00212 * 1 2 3
30 30 H 1.07991 * 120.03319 * 359.97438 * 4 3 2
31 31 H 1.08006 * 119.96667 * 179.74341 * 5 4 3
32 32 H 1.08001 * 119.94652 * 180.25589 * 6 5 4
33 33 H 1.09004 * 113.61927 * 254.53553 * 10 8 7
34 34 H 1.09005 * 113.61103 * 25.43925 * 10 8 7
35 35 H 1.09001 * 109.47048 * 95.99504 * 14 13 11
36 36 H 1.09005 * 109.47075 * 215.99700 * 14 13 11
37 37 H 1.08998 * 109.47620 * 335.99408 * 14 13 11
38 38 H 1.08004 * 126.45837 * 0.02562 * 18 17 15
39 39 H 1.08001 * 126.06882 * 180.15569 * 19 18 17
40 40 H 1.09001 * 109.47145 * 239.97579 * 21 20 19
41 41 H 0.96703 * 113.99965 * 299.99836 * 22 21 20
42 42 H 1.48492 * 110.00211 * 179.97438 * 23 21 20
43 43 H 1.48510 * 109.99973 * 301.32140 * 23 21 20
44 44 H 0.96997 * 125.67012 * 180.02562 * 24 20 19
45 45 H 1.08993 * 113.61373 * 270.87899 * 25 11 10
46 46 H 1.09007 * 113.61071 * 139.97574 * 25 11 10
47 47 H 1.08004 * 120.02567 * 179.97438 * 26 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2108 0.0000
4 6 1.2917 2.3749 -0.0005
5 6 1.9215 3.6047 -0.0063
6 6 3.3021 3.6756 -0.0009
7 6 4.0563 2.5165 -0.0003
8 6 5.5612 2.5975 -0.0006
9 1 6.0369 1.6364 0.1945
10 6 6.1382 3.3338 -1.2212
11 6 7.1518 3.9733 -0.2576
12 1 7.3476 5.0253 -0.4648
13 7 8.3777 3.1888 -0.0900
14 6 8.3070 1.8219 0.4321
15 6 9.5705 3.7247 -0.4163
16 8 9.6293 4.8604 -0.8495
17 6 10.7978 2.9392 -0.2491
18 6 12.0886 3.4105 -0.3608
19 6 12.9429 2.3293 -0.1224
20 6 12.1760 1.2386 0.1161
21 6 12.6902 -0.1460 0.4154
22 8 12.2226 -0.5603 1.7006
23 14 14.5531 -0.1318 0.4073
24 7 10.8706 1.5958 0.0419
25 6 6.1164 3.7472 0.8567
26 6 3.4316 1.2847 0.0002
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5139 0.8899
29 1 -0.3632 0.5138 -0.8901
30 1 0.2132 2.3200 -0.0014
31 1 1.3346 4.5113 -0.0109
32 1 3.7925 4.6379 -0.0012
33 1 6.5934 2.6702 -1.9565
34 1 5.4471 4.0497 -1.6661
35 1 8.2969 1.1159 -0.3983
36 1 9.1747 1.6286 1.0629
37 1 7.3969 1.7042 1.0202
38 1 12.3844 4.4244 -0.5868
39 1 14.0225 2.3579 -0.1314
40 1 12.3289 -0.8398 -0.3437
41 1 12.5067 0.0126 2.4260
42 1 15.0727 -1.4913 0.7018
43 1 15.0518 0.3280 -0.9139
44 1 10.1138 1.0034 0.1727
45 1 5.4194 4.5760 0.9798
46 1 6.5540 3.4172 1.7989
47 1 4.0212 0.3797 0.0003
There are 63 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 63
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_10860584_6580494.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Mar 6 2021 15:03:04
Heat of formation + Delta-G solvation = 32.557780 kcal
Electronic energy + Delta-G solvation = -29488.099054 eV
Core-core repulsion = 25412.994291 eV
Total energy + Delta-G solvation = -4075.104763 eV
No. of doubly occupied orbitals = 63
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 343.162 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.78707 -41.74603 -40.80475 -39.44942 -38.01243 -37.77238 -35.63642 -32.54111
-32.03810 -31.40938 -30.89865 -28.84088 -28.29251 -27.22713 -26.82752 -25.55974
-23.71036 -23.37511 -21.98550 -21.82429 -20.89719 -20.17813 -19.10734 -18.84486
-18.04576 -17.47191 -17.20622 -16.98639 -16.84589 -16.70586 -16.46474 -16.23858
-15.92575 -15.57036 -15.33137 -14.86318 -14.75816 -14.53567 -14.42032 -14.27054
-14.16243 -13.98174 -13.93652 -13.72691 -13.58256 -13.34124 -13.25186 -13.19929
-12.70095 -12.31800 -12.22663 -12.15006 -12.05212 -11.70682 -11.64773 -11.36927
-11.09384 -10.73413 -10.07774 -9.86784 -9.74857 -9.23141 -9.15476 -5.06188
0.29987 0.38069 0.47643 1.11864 1.52474 1.63793 1.69204 1.86831
2.19189 2.27882 2.35910 2.71303 3.25032 3.27212 3.47232 3.54412
3.57000 3.60668 3.67201 3.81313 3.81449 3.91504 4.05717 4.10459
4.13863 4.17577 4.20384 4.23638 4.28893 4.35688 4.41214 4.46991
4.49736 4.54699 4.59163 4.63326 4.75974 4.82016 4.88404 5.01613
5.02830 5.03829 5.09681 5.31655 5.40743 5.47665 5.62678 5.65650
5.76522 5.85938 6.17207 6.28113 6.35474 6.41172 7.06548
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.319 6.319
3 C 0.130 3.870
4 C -0.212 4.212
5 C -0.076 4.076
6 C -0.154 4.154
7 C -0.032 4.032
8 C -0.083 4.083
9 H 0.104 0.896
10 C -0.137 4.137
11 C 0.120 3.880
12 H 0.115 0.885
13 N -0.598 5.598
14 C 0.043 3.957
15 C 0.593 3.407
16 O -0.521 6.521
17 C -0.049 4.049
18 C -0.098 4.098
19 C -0.199 4.199
20 C 0.015 3.985
21 C -0.055 4.055
22 O -0.544 6.544
23 Si 0.722 3.278
24 N -0.530 5.530
25 C -0.140 4.140
26 C -0.150 4.150
27 H 0.101 0.899
28 H 0.056 0.944
29 H 0.056 0.944
30 H 0.127 0.873
31 H 0.126 0.874
32 H 0.125 0.875
33 H 0.074 0.926
34 H 0.099 0.901
35 H 0.062 0.938
36 H 0.078 0.922
37 H 0.099 0.901
38 H 0.153 0.847
39 H 0.150 0.850
40 H 0.115 0.885
41 H 0.383 0.617
42 H -0.254 1.254
43 H -0.253 1.253
44 H 0.422 0.578
45 H 0.103 0.897
46 H 0.078 0.922
47 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.417 -1.601 3.095 3.762
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.232 6.232
3 C 0.085 3.915
4 C -0.231 4.231
5 C -0.094 4.094
6 C -0.172 4.172
7 C -0.033 4.033
8 C -0.101 4.101
9 H 0.122 0.878
10 C -0.176 4.176
11 C 0.016 3.984
12 H 0.133 0.867
13 N -0.331 5.331
14 C -0.100 4.100
15 C 0.383 3.617
16 O -0.396 6.396
17 C -0.163 4.163
18 C -0.124 4.124
19 C -0.224 4.224
20 C -0.103 4.103
21 C -0.166 4.166
22 O -0.350 6.350
23 Si 0.621 3.379
24 N -0.135 5.135
25 C -0.178 4.178
26 C -0.168 4.168
27 H 0.120 0.880
28 H 0.075 0.925
29 H 0.075 0.925
30 H 0.145 0.855
31 H 0.144 0.856
32 H 0.143 0.857
33 H 0.093 0.907
34 H 0.117 0.883
35 H 0.081 0.919
36 H 0.096 0.904
37 H 0.117 0.883
38 H 0.170 0.830
39 H 0.168 0.832
40 H 0.132 0.868
41 H 0.231 0.769
42 H -0.178 1.178
43 H -0.177 1.177
44 H 0.268 0.732
45 H 0.121 0.879
46 H 0.096 0.904
47 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -1.037 -2.074 2.152 3.164
hybrid contribution -1.466 -0.399 -0.271 1.544
sum -2.503 -2.473 1.882 3.990
Atomic orbital electron populations
1.23091 0.78050 1.04215 1.01460 1.86076 1.21651 1.26898 1.88569
1.19031 0.92304 0.84278 0.95932 1.21275 1.00186 0.92456 1.09196
1.20953 0.94579 0.97080 0.96763 1.20923 0.93653 0.98127 1.04531
1.19438 0.94614 0.92206 0.97005 1.21907 0.91014 0.99323 0.97841
0.87793 1.23473 0.97802 0.99989 0.96316 1.21966 0.82843 0.96973
0.96647 0.86703 1.47380 1.06059 1.14645 1.64980 1.22493 1.04691
0.83215 0.99628 1.17107 0.81430 0.85788 0.77377 1.90864 1.85860
1.17703 1.45183 1.20356 0.95345 0.83935 1.16617 1.21326 0.89616
0.99854 1.01601 1.20725 0.99465 0.91866 1.10310 1.21220 0.84156
0.97187 1.07745 1.24965 1.12668 0.91115 0.87811 1.86493 1.78095
1.55104 1.15276 0.93997 0.73042 0.83830 0.86982 1.43154 1.08028
1.08743 1.53545 1.23515 0.97670 0.98873 0.97724 1.20281 0.91337
0.98135 1.07067 0.88028 0.92516 0.92538 0.85467 0.85613 0.85674
0.90699 0.88301 0.91922 0.90386 0.88311 0.82969 0.83219 0.86792
0.76876 1.17848 1.17700 0.73181 0.87868 0.90384 0.85397
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 -0.03 9.81 101.05 0.99 0.96 16
2 O -0.32 -0.71 10.50 -19.42 -0.20 -0.91 16
3 C 0.13 0.28 6.69 -39.22 -0.26 0.01 16
4 C -0.21 -0.21 9.04 -39.43 -0.36 -0.56 16
5 C -0.08 -0.02 10.04 -39.61 -0.40 -0.42 16
6 C -0.15 -0.01 8.61 -39.56 -0.34 -0.35 16
7 C -0.03 -0.01 5.29 -104.65 -0.55 -0.56 16
8 C -0.08 0.12 3.30 -90.96 -0.30 -0.18 16
9 H 0.10 -0.25 5.40 -51.93 -0.28 -0.53 16
10 C -0.14 0.11 7.21 -25.92 -0.19 -0.07 16
11 C 0.12 -0.02 4.45 -67.12 -0.30 -0.31 16
12 H 0.12 0.16 7.23 -51.93 -0.38 -0.22 16
13 N -0.60 -0.16 3.08 -174.55 -0.54 -0.70 16
14 C 0.04 -0.12 7.51 59.84 0.45 0.33 16
15 C 0.59 1.90 7.64 -12.85 -0.10 1.80 16
16 O -0.52 -3.47 16.38 5.20 0.09 -3.38 16
17 C -0.05 -0.10 6.65 -81.98 -0.55 -0.64 16
18 C -0.10 -0.19 10.67 -39.12 -0.42 -0.60 16
19 C -0.20 -0.02 9.32 -39.98 -0.37 -0.39 16
20 C 0.02 -0.01 6.47 -81.95 -0.53 -0.54 16
21 C -0.06 0.09 3.08 36.00 0.11 0.20 16
22 O -0.54 0.88 12.88 -35.23 -0.45 0.42 16
23 Si 0.72 -1.61 30.54 -169.99 -5.19 -6.80 16
24 N -0.53 0.16 5.05 -5.70 -0.03 0.13 16
25 C -0.14 0.23 6.67 -25.92 -0.17 0.06 16
26 C -0.15 -0.21 9.65 -39.44 -0.38 -0.60 16
27 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16
28 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16
29 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16
30 H 0.13 -0.09 6.30 -52.49 -0.33 -0.42 16
31 H 0.13 -0.19 8.06 -52.48 -0.42 -0.62 16
32 H 0.13 -0.19 6.65 -52.49 -0.35 -0.54 16
33 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16
34 H 0.10 -0.10 7.72 -51.93 -0.40 -0.50 16
35 H 0.06 -0.23 7.73 -51.93 -0.40 -0.63 16
36 H 0.08 -0.24 5.17 -51.93 -0.27 -0.51 16
37 H 0.10 -0.37 4.49 -51.93 -0.23 -0.61 16
38 H 0.15 0.24 8.06 -52.48 -0.42 -0.18 16
39 H 0.15 -0.29 6.17 -52.49 -0.32 -0.62 16
40 H 0.11 -0.16 7.96 -51.93 -0.41 -0.58 16
41 H 0.38 -1.96 8.70 45.56 0.40 -1.56 16
42 H -0.25 -0.22 7.11 56.52 0.40 0.18 16
43 H -0.25 -0.10 7.11 56.52 0.40 0.30 16
44 H 0.42 -0.90 4.92 -40.82 -0.20 -1.10 16
45 H 0.10 -0.22 6.31 -51.93 -0.33 -0.55 16
46 H 0.08 -0.14 7.47 -51.92 -0.39 -0.53 16
47 H 0.13 0.06 8.05 -52.48 -0.42 -0.36 16
LS Contribution 372.75 15.07 5.62 5.62
Total: 0.00 -8.81 372.75 -10.38 -19.19
By element:
Atomic # 1 Polarization: -5.70 SS G_CDS: -6.00 Total: -11.70 kcal
Atomic # 6 Polarization: 1.80 SS G_CDS: -3.66 Total: -1.86 kcal
Atomic # 7 Polarization: -0.01 SS G_CDS: -0.57 Total: -0.57 kcal
Atomic # 8 Polarization: -3.30 SS G_CDS: -0.57 Total: -3.87 kcal
Atomic # 14 Polarization: -1.61 SS G_CDS: -5.19 Total: -6.80 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -8.81 -10.38 -19.19 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_10860584_6580494.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.747 kcal
(2) G-P(sol) polarization free energy of solvation -8.810 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.937 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.190 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds