Wall clock time and date at job start Sat Mar 6 2021 13:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47120 * 2 1 4 4 O 1.42899 * 109.47412 * 120.00173 * 2 1 3 5 5 C 1.42894 * 113.99885 * 89.99666 * 4 2 1 6 6 H 1.09000 * 112.85511 * 341.20055 * 5 4 2 7 7 C 1.53955 * 113.73972 * 112.40851 * 5 4 2 8 8 C 1.53791 * 87.01917 * 139.94421 * 7 5 4 9 9 H 1.08995 * 113.61235 * 89.22713 * 8 7 5 10 10 N 1.46505 * 113.61264 * 220.04706 * 8 7 5 11 11 C 1.34773 * 120.00095 * 254.13685 * 10 8 7 12 12 O 1.21703 * 119.99823 * 359.97438 * 11 10 8 13 13 C 1.46674 * 120.00015 * 179.72493 * 11 10 8 14 14 C 1.37879 * 126.22956 * 180.27257 * 13 11 10 15 15 C 1.39839 * 107.08148 * 179.97438 * 14 13 11 16 16 C 1.50696 * 126.06783 * 180.02562 * 15 14 13 17 17 O 1.42908 * 109.46768 * 300.00202 * 16 15 14 18 18 Si 1.86293 * 109.47371 * 179.97438 * 16 15 14 19 19 C 1.35455 * 107.86470 * 359.97438 * 15 14 13 20 20 N 1.35538 * 108.87160 * 359.77101 * 19 15 14 21 21 C 1.53780 * 87.17106 * 334.63326 * 8 7 5 22 22 H 1.09000 * 109.46825 * 300.00253 * 1 2 3 23 23 H 1.09005 * 109.46914 * 59.99240 * 1 2 3 24 24 H 1.08997 * 109.47117 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47173 * 240.00129 * 2 1 3 26 26 H 1.09007 * 109.47080 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47806 * 299.99882 * 3 2 1 28 28 H 1.09000 * 109.47479 * 60.00147 * 3 2 1 29 29 H 1.09000 * 113.61729 * 25.42653 * 7 5 4 30 30 H 1.08997 * 113.66555 * 254.46760 * 7 5 4 31 31 H 0.97000 * 119.99792 * 74.13250 * 10 8 7 32 32 H 1.07992 * 126.46022 * 359.97438 * 14 13 11 33 33 H 1.09001 * 109.47386 * 59.99731 * 16 15 14 34 34 H 0.96698 * 113.99904 * 299.99401 * 17 16 15 35 35 H 1.48500 * 109.99904 * 58.68071 * 18 16 15 36 36 H 1.48501 * 110.00219 * 179.97438 * 18 16 15 37 37 H 1.08000 * 125.56379 * 179.97438 * 19 15 14 38 38 H 0.96997 * 125.67183 * 180.22991 * 20 19 15 39 39 H 1.09008 * 113.60993 * 139.93704 * 21 8 7 40 40 H 1.08993 * 113.61850 * 270.75762 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0781 0.9885 6 1 1.6627 -2.4736 0.1266 7 6 3.6760 -2.5124 1.0450 8 6 3.2009 -3.7407 1.8391 9 1 2.9369 -4.5914 1.2108 10 7 4.0901 -4.1044 2.9451 11 6 4.8887 -5.1850 2.8403 12 8 4.8707 -5.8589 1.8270 13 6 5.7834 -5.5457 3.9452 14 6 6.6535 -6.6149 3.9734 15 6 7.3059 -6.5810 5.2098 16 6 8.3498 -7.5565 5.6891 17 8 7.7935 -8.8725 5.7198 18 14 8.9081 -7.0774 7.4006 19 6 6.8338 -5.5152 5.8997 20 7 5.9120 -4.8746 5.1401 21 6 1.9910 -2.8968 2.2735 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 4.3081 -1.8373 1.6219 30 1 4.0972 -2.7588 0.0703 31 1 4.1042 -3.5674 3.7528 32 1 6.8031 -7.3414 3.1885 33 1 9.2028 -7.5384 5.0107 34 1 7.0288 -8.9627 6.3048 35 1 7.7489 -7.0670 8.3287 36 1 9.9373 -8.0321 7.8850 37 1 7.1440 -5.2217 6.8917 38 1 5.4226 -4.0776 5.3969 39 1 1.0536 -3.4531 2.2891 40 1 2.1609 -2.3281 3.1877 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:12:38 Heat of formation + Delta-G solvation = -46.164680 kcal Electronic energy + Delta-G solvation = -21569.599723 eV Core-core repulsion = 18159.523479 eV Total energy + Delta-G solvation = -3410.076244 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.49654 -41.06888 -39.76197 -37.89789 -37.79034 -34.70848 -33.01896 -32.42589 -30.70305 -28.15628 -26.86258 -26.78091 -25.53627 -23.55373 -22.24696 -21.44461 -21.07548 -20.74826 -19.81044 -18.39041 -17.59850 -17.14464 -16.80268 -16.54517 -16.34541 -15.90355 -15.80613 -15.62044 -15.17011 -14.81920 -14.62108 -14.45297 -14.18813 -13.85316 -13.61526 -13.53233 -13.47465 -13.25533 -13.08847 -12.65481 -12.45243 -12.34223 -12.12978 -11.85120 -11.81634 -11.60982 -11.31572 -10.51806 -10.45733 -10.25730 -9.95083 -9.30141 -4.84105 0.33953 1.37877 1.57083 1.69176 1.88098 2.08886 2.12397 2.22051 2.77023 3.37639 3.48925 3.54748 3.73947 3.78530 3.85703 3.98024 3.99322 4.11450 4.17025 4.27304 4.31047 4.37943 4.62915 4.68090 4.71911 4.73351 4.78929 4.85475 4.88879 4.90244 4.94577 4.95884 5.00471 5.04243 5.27458 5.29740 5.37673 5.57890 5.72739 6.30820 6.34489 6.50147 6.62791 7.01822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 C -0.150 4.150 4 O -0.381 6.381 5 C 0.065 3.935 6 H 0.099 0.901 7 C -0.166 4.166 8 C 0.122 3.878 9 H 0.104 0.896 10 N -0.702 5.702 11 C 0.589 3.411 12 O -0.576 6.576 13 C -0.071 4.071 14 C -0.104 4.104 15 C -0.225 4.225 16 C -0.061 4.061 17 O -0.558 6.558 18 Si 0.791 3.209 19 C 0.062 3.938 20 N -0.515 5.515 21 C -0.130 4.130 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.412 0.588 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.384 0.616 35 H -0.269 1.269 36 H -0.314 1.314 37 H 0.216 0.784 38 H 0.437 0.563 39 H 0.090 0.910 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.885 7.485 4.169 8.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.016 3.984 3 C -0.208 4.208 4 O -0.300 6.300 5 C 0.007 3.993 6 H 0.117 0.883 7 C -0.205 4.205 8 C 0.017 3.983 9 H 0.122 0.878 10 N -0.353 5.353 11 C 0.378 3.622 12 O -0.455 6.455 13 C -0.184 4.184 14 C -0.131 4.131 15 C -0.231 4.231 16 C -0.169 4.169 17 O -0.366 6.366 18 Si 0.695 3.305 19 C -0.077 4.077 20 N -0.112 5.112 21 C -0.168 4.168 22 H 0.077 0.923 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.249 0.751 32 H 0.142 0.858 33 H 0.126 0.874 34 H 0.233 0.767 35 H -0.195 1.195 36 H -0.243 1.243 37 H 0.232 0.768 38 H 0.278 0.722 39 H 0.109 0.891 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.488 6.940 4.003 8.149 hybrid contribution -1.046 -0.739 -0.243 1.304 sum -2.534 6.201 3.760 7.682 Atomic orbital electron populations 1.22312 0.95375 1.02507 1.02940 1.22298 0.94099 0.94130 0.87867 1.21882 1.01562 0.94265 1.03042 1.87950 1.85971 1.19739 1.36337 1.23514 0.95507 0.81383 0.98911 0.88294 1.24026 0.98049 0.97157 1.01259 1.22202 0.90669 0.96310 0.89113 0.87764 1.45633 1.41080 1.28361 1.20218 1.17303 0.79228 0.80259 0.85402 1.90845 1.69128 1.53811 1.31754 1.20102 1.07572 1.00813 0.89867 1.21226 0.96594 0.97095 0.98173 1.19892 1.05521 1.01502 0.96200 1.24774 0.96492 0.81974 1.13699 1.86567 1.50791 1.29744 1.69459 0.94306 0.77903 0.87406 0.70927 1.22388 0.92781 0.94012 0.98493 1.41865 1.32791 1.24460 1.12130 1.23551 0.97995 0.96337 0.98965 0.92325 0.90631 0.92390 0.91564 0.92390 0.89971 0.92239 0.88830 0.91315 0.75094 0.85838 0.87350 0.76687 1.19529 1.24280 0.76780 0.72153 0.89147 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.41 9.53 71.98 0.69 1.10 16 2 C 0.07 -0.08 3.22 30.59 0.10 0.02 16 3 C -0.15 0.29 9.56 71.98 0.69 0.98 16 4 O -0.38 -0.50 10.00 -148.98 -1.49 -1.99 16 5 C 0.07 -0.12 4.13 31.18 0.13 0.01 16 6 H 0.10 -0.33 7.77 -2.39 -0.02 -0.35 16 7 C -0.17 0.10 7.73 31.18 0.24 0.34 16 8 C 0.12 -0.08 4.21 45.52 0.19 0.11 16 9 H 0.10 0.33 7.50 -2.39 -0.02 0.31 16 10 N -0.70 1.07 5.36 -443.98 -2.38 -1.31 16 11 C 0.59 3.67 7.79 86.45 0.67 4.35 16 12 O -0.58 -9.14 16.50 -4.36 -0.07 -9.21 16 13 C -0.07 -0.21 7.06 40.35 0.28 0.08 16 14 C -0.10 -0.68 10.59 22.57 0.24 -0.44 16 15 C -0.22 -0.12 5.44 -20.12 -0.11 -0.23 16 16 C -0.06 -0.04 3.02 71.23 0.22 0.18 16 17 O -0.56 -2.96 12.88 -148.98 -1.92 -4.88 16 18 Si 0.79 -3.40 30.59 68.60 2.10 -1.30 16 19 C 0.06 -0.39 10.45 83.48 0.87 0.48 16 20 N -0.52 3.27 5.99 -183.62 -1.10 2.17 16 21 C -0.13 0.54 7.66 31.12 0.24 0.78 16 22 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 23 H 0.07 -0.32 8.14 -2.38 -0.02 -0.34 16 24 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 25 H 0.07 -0.15 7.72 -2.39 -0.02 -0.17 16 26 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 27 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.41 -3.53 7.84 -92.71 -0.73 -4.26 16 32 H 0.12 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.11 0.11 7.96 -2.39 -0.02 0.09 16 34 H 0.38 -0.37 8.70 -74.06 -0.64 -1.02 16 35 H -0.27 0.70 7.11 99.48 0.71 1.41 16 36 H -0.31 -1.62 7.11 99.48 0.71 -0.91 16 37 H 0.22 -3.08 6.19 -2.91 -0.02 -3.10 16 38 H 0.44 -6.13 8.19 -92.71 -0.76 -6.89 16 39 H 0.09 -0.47 8.14 -2.38 -0.02 -0.49 16 40 H 0.11 -0.61 8.11 -2.39 -0.02 -0.63 16 Total: 0.00 -23.12 337.23 -1.44 -24.56 By element: Atomic # 1 Polarization: -14.77 SS G_CDS: -1.03 Total: -15.79 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 4.45 Total: 7.75 kcal Atomic # 7 Polarization: 4.34 SS G_CDS: -3.48 Total: 0.86 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -3.48 Total: -16.08 kcal Atomic # 14 Polarization: -3.40 SS G_CDS: 2.10 Total: -1.30 kcal Total: -23.12 -1.44 -24.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.602 kcal (2) G-P(sol) polarization free energy of solvation -23.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds