Wall clock time and date at job start Sat Mar 6 2021 13:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47461 * 2 1 4 4 O 1.42898 * 109.46789 * 120.00515 * 2 1 3 5 5 C 1.42898 * 114.00304 * 89.99448 * 4 2 1 6 6 H 1.08993 * 112.85304 * 341.19652 * 5 4 2 7 7 C 1.53788 * 113.68898 * 112.46326 * 5 4 2 8 8 C 1.53780 * 87.08188 * 139.99121 * 7 5 4 9 9 H 1.09000 * 113.68913 * 89.12303 * 8 7 5 10 10 N 1.46496 * 113.61234 * 220.01987 * 8 7 5 11 11 C 1.34777 * 119.99614 * 252.49187 * 10 8 7 12 12 O 1.21552 * 120.00264 * 0.02562 * 11 10 8 13 13 C 1.47856 * 120.00061 * 180.02562 * 11 10 8 14 14 C 1.39537 * 120.13401 * 359.97438 * 13 11 10 15 15 C 1.38076 * 119.83832 * 179.97438 * 14 13 11 16 16 Br 1.89101 * 119.93919 * 180.02562 * 15 14 13 17 17 C 1.38421 * 120.12630 * 0.03244 * 15 14 13 18 18 C 1.38367 * 120.28100 * 359.97438 * 17 15 14 19 19 C 1.50701 * 119.92022 * 179.97438 * 18 17 15 20 20 O 1.42905 * 109.46948 * 245.00056 * 19 18 17 21 21 Si 1.86298 * 109.47136 * 5.00062 * 19 18 17 22 22 C 1.37942 * 120.15374 * 359.70378 * 18 17 15 23 23 C 1.53777 * 113.61474 * 209.99310 * 5 4 2 24 24 H 1.08999 * 109.47783 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46944 * 300.00364 * 1 2 3 26 26 H 1.09000 * 109.46947 * 59.99793 * 1 2 3 27 27 H 1.09001 * 109.46552 * 239.99965 * 2 1 3 28 28 H 1.08999 * 109.46836 * 180.02562 * 3 2 1 29 29 H 1.09010 * 109.47050 * 300.00145 * 3 2 1 30 30 H 1.08998 * 109.47339 * 59.99878 * 3 2 1 31 31 H 1.08997 * 113.61469 * 25.44287 * 7 5 4 32 32 H 1.08999 * 113.61342 * 254.54116 * 7 5 4 33 33 H 0.96996 * 120.00499 * 72.49764 * 10 8 7 34 34 H 1.07998 * 120.08300 * 359.96046 * 14 13 11 35 35 H 1.08002 * 119.86338 * 179.97438 * 17 15 14 36 36 H 1.08998 * 109.47018 * 125.00464 * 19 18 17 37 37 H 0.96697 * 113.99578 * 60.00559 * 20 19 18 38 38 H 1.48505 * 109.99887 * 58.68373 * 21 19 18 39 39 H 1.48498 * 109.99792 * 179.97438 * 21 19 18 40 40 H 1.08007 * 120.06171 * 180.27399 * 22 18 17 41 41 H 1.09004 * 113.61351 * 105.38650 * 23 5 4 42 42 H 1.09004 * 113.69312 * 334.50380 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1999 -2.0783 0.9886 6 1 1.6625 -2.4737 0.1267 7 6 3.6745 -2.5110 1.0467 8 6 3.2007 -3.7408 1.8391 9 1 2.9367 -4.5915 1.2109 10 7 4.0900 -4.1045 2.9451 11 6 4.8658 -5.2027 2.8527 12 8 4.8280 -5.8911 1.8516 13 6 5.7629 -5.5701 3.9690 14 6 5.8090 -4.7816 5.1193 15 6 6.6486 -5.1307 6.1584 16 35 6.7128 -4.0645 7.7189 17 6 7.4436 -6.2596 6.0599 18 6 7.4021 -7.0451 4.9216 19 6 8.2715 -8.2720 4.8228 20 8 9.2288 -8.0945 3.7768 21 14 9.1595 -8.5356 6.4392 22 6 6.5626 -6.7108 3.8793 23 6 1.9909 -2.8968 2.2735 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4423 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 4.3053 -1.8356 1.6246 32 1 4.0964 -2.7557 0.0719 33 1 4.1204 -3.5550 3.7438 34 1 5.1896 -3.9003 5.1967 35 1 8.0991 -6.5285 6.8751 36 1 7.6506 -9.1406 4.6035 37 1 9.8168 -7.3378 3.9061 38 1 8.1751 -8.6899 7.5403 39 1 10.0199 -9.7431 6.3549 40 1 6.5281 -7.3274 2.9932 41 1 1.0535 -3.4530 2.2892 42 1 2.1608 -2.3280 3.1877 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:13:22 Heat of formation + Delta-G solvation = -55.316545 kcal Electronic energy + Delta-G solvation = -24710.321444 eV Core-core repulsion = 20897.230114 eV Total energy + Delta-G solvation = -3813.091331 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.061 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.75498 -40.70704 -39.69518 -37.91548 -37.66855 -34.83870 -33.63017 -33.24052 -32.48611 -30.47029 -28.14759 -27.08292 -26.79442 -26.36920 -24.20756 -22.84019 -22.26900 -21.59084 -21.01832 -19.10755 -18.46332 -17.81050 -17.58382 -17.15946 -16.63548 -16.47005 -16.34831 -16.01410 -15.82428 -15.58262 -15.22069 -14.97779 -14.82471 -14.34396 -14.27758 -14.08500 -13.61822 -13.51501 -13.31158 -13.25266 -13.08393 -13.03374 -12.64834 -12.32131 -12.22951 -12.11558 -11.97709 -11.95912 -11.83173 -11.59755 -11.45847 -11.19758 -10.56949 -10.44757 -10.35807 -10.10990 -9.92604 -5.05854 -0.53926 -0.17924 0.42183 1.20805 1.47922 1.59349 1.87005 1.95121 2.43509 2.76870 3.25770 3.31766 3.43886 3.50340 3.54654 3.77280 3.79123 3.83847 3.87602 3.94569 4.00240 4.12383 4.19009 4.25145 4.28437 4.34924 4.47698 4.63992 4.70713 4.72896 4.74515 4.80336 4.87285 4.90502 4.91089 4.96022 4.96844 5.01856 5.08329 5.28447 5.30676 5.33844 5.41926 6.31038 6.35924 6.70974 6.98671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 C -0.150 4.150 4 O -0.381 6.381 5 C 0.065 3.935 6 H 0.100 0.900 7 C -0.166 4.166 8 C 0.121 3.879 9 H 0.108 0.892 10 N -0.698 5.698 11 C 0.561 3.439 12 O -0.572 6.572 13 C -0.136 4.136 14 C -0.044 4.044 15 C -0.099 4.099 16 Br -0.027 7.027 17 C -0.058 4.058 18 C -0.117 4.117 19 C -0.075 4.075 20 O -0.552 6.552 21 Si 0.771 3.229 22 C -0.030 4.030 23 C -0.133 4.133 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.415 0.585 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.112 0.888 37 H 0.397 0.603 38 H -0.277 1.277 39 H -0.293 1.293 40 H 0.131 0.869 41 H 0.090 0.910 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 4.588 2.219 5.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.016 3.984 3 C -0.208 4.208 4 O -0.301 6.301 5 C 0.007 3.993 6 H 0.118 0.882 7 C -0.205 4.205 8 C 0.016 3.984 9 H 0.126 0.874 10 N -0.350 5.350 11 C 0.349 3.651 12 O -0.452 6.452 13 C -0.140 4.140 14 C -0.065 4.065 15 C -0.179 4.179 16 Br 0.058 6.942 17 C -0.078 4.078 18 C -0.118 4.118 19 C -0.184 4.184 20 O -0.361 6.361 21 Si 0.676 3.324 22 C -0.049 4.049 23 C -0.171 4.171 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.253 0.747 34 H 0.178 0.822 35 H 0.176 0.824 36 H 0.130 0.870 37 H 0.247 0.753 38 H -0.204 1.204 39 H -0.221 1.221 40 H 0.149 0.851 41 H 0.109 0.891 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.281 3.587 2.709 4.504 hybrid contribution -0.606 -0.401 -0.782 1.067 sum -0.886 3.186 1.928 3.828 Atomic orbital electron populations 1.22313 0.95412 1.02506 1.02908 1.22295 0.94073 0.94117 0.87888 1.21882 1.01570 0.94301 1.03010 1.87959 1.85978 1.19772 1.36341 1.23485 0.95584 0.81369 0.98876 0.88196 1.23994 0.98045 0.97112 1.01301 1.22232 0.90641 0.96414 0.89079 0.87441 1.45746 1.41493 1.26750 1.20992 1.18384 0.79875 0.80589 0.86251 1.90794 1.68258 1.53158 1.33004 1.19862 1.00788 0.98288 0.95081 1.21457 0.96001 0.98754 0.90266 1.21745 1.02565 0.98409 0.95138 1.96865 1.98276 1.67261 1.31750 1.21381 0.96814 0.92166 0.97421 1.20344 0.99086 0.98400 0.93962 1.25255 0.93226 0.96281 1.03672 1.86515 1.48277 1.54624 1.46639 0.93879 0.80917 0.85144 0.72509 1.21269 0.91249 0.94198 0.98200 1.23573 0.98099 0.96450 0.98991 0.92372 0.92391 0.90629 0.91490 0.92377 0.89967 0.92301 0.88819 0.91112 0.74683 0.82188 0.82397 0.87012 0.75277 1.20361 1.22094 0.85140 0.89137 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.36 9.53 71.98 0.69 1.05 16 2 C 0.07 -0.06 3.22 30.59 0.10 0.04 16 3 C -0.15 0.24 9.56 71.98 0.69 0.93 16 4 O -0.38 -0.67 10.00 -148.98 -1.49 -2.16 16 5 C 0.07 -0.10 4.13 31.12 0.13 0.02 16 6 H 0.10 -0.34 7.77 -2.39 -0.02 -0.36 16 7 C -0.17 0.11 7.71 31.12 0.24 0.35 16 8 C 0.12 -0.08 4.24 45.52 0.19 0.11 16 9 H 0.11 0.27 7.46 -2.39 -0.02 0.25 16 10 N -0.70 0.76 5.31 -442.91 -2.35 -1.59 16 11 C 0.56 2.78 7.77 86.79 0.67 3.45 16 12 O -0.57 -7.62 15.95 -3.88 -0.06 -7.68 16 13 C -0.14 -0.22 5.87 -20.09 -0.12 -0.34 16 14 C -0.04 0.13 9.28 22.54 0.21 0.34 16 15 C -0.10 0.25 6.22 22.27 0.14 0.39 16 16 Br -0.03 0.08 33.69 -20.37 -0.69 -0.61 16 17 C -0.06 0.18 8.40 22.34 0.19 0.37 16 18 C -0.12 0.10 5.34 -19.90 -0.11 0.00 16 19 C -0.07 0.10 2.80 71.24 0.20 0.30 16 20 O -0.55 0.06 12.84 -148.98 -1.91 -1.85 16 21 Si 0.77 -2.74 29.79 68.60 2.04 -0.69 16 22 C -0.03 -0.09 9.23 22.53 0.21 0.12 16 23 C -0.13 0.48 7.66 31.12 0.24 0.71 16 24 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 25 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.07 -0.15 7.73 -2.39 -0.02 -0.17 16 28 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 30 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.41 -2.75 6.76 -92.71 -0.63 -3.38 16 34 H 0.16 -1.28 6.40 -2.91 -0.02 -1.30 16 35 H 0.16 -1.09 4.89 -2.91 -0.01 -1.11 16 36 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 37 H 0.40 -3.40 8.70 -74.06 -0.64 -4.05 16 38 H -0.28 -0.16 7.11 99.48 0.71 0.54 16 39 H -0.29 -1.19 7.11 99.48 0.71 -0.49 16 40 H 0.13 0.81 7.65 -2.91 -0.02 0.78 16 41 H 0.09 -0.43 8.14 -2.38 -0.02 -0.45 16 42 H 0.10 -0.47 8.12 -2.38 -0.02 -0.49 16 Total: 0.00 -17.03 369.47 -0.97 -18.00 By element: Atomic # 1 Polarization: -11.08 SS G_CDS: -0.18 Total: -11.26 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 3.67 Total: 7.84 kcal Atomic # 7 Polarization: 0.76 SS G_CDS: -2.35 Total: -1.59 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -3.46 Total: -11.69 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.04 Total: -0.69 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -0.69 Total: -0.61 kcal Total: -17.03 -0.97 -18.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.312 kcal (2) G-P(sol) polarization free energy of solvation -17.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds