Wall clock time and date at job start Sat Mar 6 2021 13:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47484 * 2 1 4 4 C 1.53002 * 109.47459 * 173.67401 * 3 2 1 5 5 C 1.53000 * 109.47004 * 293.67644 * 3 2 1 6 6 C 1.50698 * 109.47313 * 180.75839 * 5 3 2 7 7 O 1.21279 * 120.00196 * 116.77290 * 6 5 3 8 8 N 1.34776 * 120.00211 * 296.77649 * 6 5 3 9 9 C 1.46502 * 120.00300 * 175.68930 * 8 6 5 10 10 H 1.08996 * 112.84581 * 336.19505 * 9 8 6 11 11 C 1.53784 * 113.68860 * 107.46655 * 9 8 6 12 12 C 1.53788 * 87.07912 * 139.99005 * 11 9 8 13 13 H 1.09003 * 113.68943 * 89.12530 * 12 11 9 14 14 O 1.42892 * 113.61170 * 220.01402 * 12 11 9 15 15 C 1.42899 * 114.00216 * 247.49923 * 14 12 11 16 16 C 1.53001 * 109.47110 * 270.00261 * 15 14 12 17 17 C 1.52996 * 109.47218 * 150.00162 * 15 14 12 18 18 C 1.53778 * 87.08048 * 334.56797 * 12 11 9 19 19 N 1.46497 * 109.46853 * 300.75617 * 5 3 2 20 20 C 1.36343 * 125.63596 * 295.11480 * 19 5 3 21 21 C 1.34856 * 108.21973 * 179.83450 * 20 19 5 22 22 C 1.40890 * 107.41486 * 0.42132 * 21 20 19 23 23 C 1.34855 * 107.41720 * 359.73889 * 22 21 20 24 24 C 1.50701 * 125.88937 * 180.02562 * 23 22 21 25 25 O 1.42900 * 109.47005 * 209.97658 * 24 23 22 26 26 Si 1.86299 * 109.47426 * 329.98127 * 24 23 22 27 27 H 1.08993 * 109.47368 * 305.14976 * 1 2 3 28 28 H 1.09005 * 109.46480 * 65.14855 * 1 2 3 29 29 H 1.08999 * 109.47113 * 185.14133 * 1 2 3 30 30 H 1.08997 * 109.47557 * 239.99532 * 2 1 3 31 31 H 1.09002 * 109.46852 * 119.99997 * 2 1 3 32 32 H 1.09004 * 109.47331 * 53.67066 * 3 2 1 33 33 H 1.09001 * 109.46932 * 171.39557 * 4 3 2 34 34 H 1.08996 * 109.47147 * 291.39548 * 4 3 2 35 35 H 1.08995 * 109.47089 * 51.39888 * 4 3 2 36 36 H 1.08997 * 109.47287 * 60.75851 * 5 3 2 37 37 H 0.97000 * 119.99655 * 355.68977 * 8 6 5 38 38 H 1.08996 * 113.61364 * 25.44187 * 11 9 8 39 39 H 1.08999 * 113.60923 * 254.53451 * 11 9 8 40 40 H 1.08997 * 109.46864 * 30.00314 * 15 14 12 41 41 H 1.08995 * 109.47023 * 179.97438 * 16 15 14 42 42 H 1.09003 * 109.47065 * 59.99945 * 16 15 14 43 43 H 1.08997 * 109.47300 * 299.99786 * 16 15 14 44 44 H 1.09006 * 109.46998 * 179.97438 * 17 15 14 45 45 H 1.08999 * 109.47522 * 300.00208 * 17 15 14 46 46 H 1.09002 * 109.47508 * 60.00217 * 17 15 14 47 47 H 1.09004 * 113.61357 * 139.98687 * 18 12 11 48 48 H 1.09005 * 113.60987 * 270.87958 * 18 12 11 49 49 H 1.07992 * 125.89336 * 0.02562 * 20 19 5 50 50 H 1.07992 * 126.29503 * 180.16469 * 21 20 19 51 51 H 1.08001 * 126.29692 * 179.73632 * 22 21 20 52 52 H 1.09006 * 109.46816 * 89.98244 * 24 23 22 53 53 H 0.96699 * 114.00016 * 60.00496 * 25 24 23 54 54 H 1.48503 * 109.99696 * 180.02562 * 26 24 23 55 55 H 1.48502 * 109.99505 * 301.31598 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5618 1.4453 0.1589 5 6 1.6639 2.1163 -1.3211 6 6 2.1825 3.5313 -1.3288 7 8 3.0144 3.8678 -2.1446 8 7 1.7219 4.4227 -0.4289 9 6 2.2933 5.7706 -0.3746 10 1 3.3041 5.8184 -0.7797 11 6 1.3575 6.8609 -0.9227 12 6 1.8383 7.7469 0.2387 13 1 2.7246 8.3359 0.0025 14 8 0.7978 8.5246 0.8341 15 6 0.9291 9.9315 0.6209 16 6 1.7519 10.5446 1.7558 17 6 -0.4589 10.5746 0.5921 18 6 2.1476 6.4465 0.9990 19 7 2.2576 1.3727 -2.4349 20 6 3.5924 1.2365 -2.6774 21 6 3.7449 0.4830 -3.7854 22 6 2.4570 0.1495 -4.2492 23 6 1.5666 0.7072 -3.4037 24 6 0.0665 0.6108 -3.5109 25 8 -0.5270 1.7876 -2.9587 26 14 -0.4192 0.4523 -5.3025 27 1 -0.3634 0.5916 0.8402 28 1 -0.3632 0.4319 -0.9326 29 1 -0.3633 -1.0235 0.0921 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5872 1.9880 0.8279 33 1 3.9411 2.4558 0.0065 34 1 3.8230 1.1065 1.1614 35 1 4.0053 0.7758 -0.5780 36 1 0.5793 2.1263 -1.4280 37 1 1.0121 4.1718 0.1827 38 1 0.3010 6.5995 -0.8640 39 1 1.6488 7.2328 -1.9050 40 1 1.4318 10.1095 -0.3296 41 1 1.8523 11.6177 1.5930 42 1 2.7407 10.0864 1.7763 43 1 1.2491 10.3666 2.7064 44 1 -0.3587 11.6479 0.4300 45 1 -1.0451 10.1378 -0.2163 46 1 -0.9617 10.3965 1.5427 47 1 3.0765 6.4838 1.5681 48 1 1.3070 6.0718 1.5831 49 1 4.3900 1.6568 -2.0830 50 1 4.6820 0.1923 -4.2367 51 1 2.2253 -0.4436 -5.1215 52 1 -0.2816 -0.2638 -2.9613 53 1 -0.2615 2.6061 -3.3998 54 1 -1.8964 0.3571 -5.4216 55 1 0.0772 1.6235 -6.0687 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_12360566.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:13:25 Heat of formation + Delta-G solvation = -33.635705 kcal Electronic energy + Delta-G solvation = -33701.608646 eV Core-core repulsion = 29514.387604 eV Total energy + Delta-G solvation = -4187.221042 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.224 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.89490 -41.22026 -40.01571 -38.02816 -38.01100 -37.56478 -34.58687 -33.10288 -32.80687 -31.51281 -30.59411 -28.39506 -28.16017 -26.82782 -26.10156 -25.26134 -24.47531 -22.42912 -22.11220 -21.68076 -21.42304 -21.19098 -20.28385 -18.71998 -18.44066 -18.20684 -17.15362 -16.92496 -16.73682 -16.68649 -16.24004 -15.88107 -15.62496 -15.40408 -15.32113 -15.06434 -14.63860 -14.57582 -14.50127 -14.31671 -14.16723 -14.11241 -13.75409 -13.65155 -13.55257 -13.48936 -13.28829 -13.11563 -13.09750 -12.80862 -12.67578 -12.39312 -12.36708 -12.21275 -12.14646 -11.94546 -11.89863 -11.85452 -11.80813 -11.63825 -11.62787 -11.12343 -10.74888 -10.47800 -10.18951 -9.49249 -8.83958 -4.89827 1.02144 1.31509 1.44911 1.65314 1.72626 1.93216 2.16189 2.26312 2.73672 3.07842 3.34270 3.40500 3.46338 3.55215 3.64816 3.73613 3.79852 3.80458 3.94981 3.96514 4.08555 4.18780 4.24195 4.27237 4.29128 4.31784 4.47185 4.54516 4.59083 4.61065 4.66408 4.67812 4.69397 4.73446 4.76460 4.76829 4.83078 4.86739 4.86994 4.91667 4.93180 4.97637 5.01487 5.15649 5.16637 5.24809 5.26912 5.27899 5.36088 5.38415 5.43225 5.44347 6.01811 6.23308 6.24778 6.30878 6.35375 6.48364 6.99739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.113 4.113 3 C -0.088 4.088 4 C -0.161 4.161 5 C 0.103 3.897 6 C 0.508 3.492 7 O -0.561 6.561 8 N -0.699 5.699 9 C 0.127 3.873 10 H 0.103 0.897 11 C -0.166 4.166 12 C 0.065 3.935 13 H 0.098 0.902 14 O -0.381 6.381 15 C 0.074 3.926 16 C -0.173 4.173 17 C -0.150 4.150 18 C -0.130 4.130 19 N -0.412 5.412 20 C 0.010 3.990 21 C -0.224 4.224 22 C -0.196 4.196 23 C -0.027 4.027 24 C -0.051 4.051 25 O -0.539 6.539 26 Si 0.790 3.210 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.160 0.840 37 H 0.416 0.584 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.155 0.845 50 H 0.140 0.860 51 H 0.163 0.837 52 H 0.136 0.864 53 H 0.381 0.619 54 H -0.289 1.289 55 H -0.303 1.303 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 -0.297 3.757 4.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.151 4.151 3 C -0.107 4.107 4 C -0.218 4.218 5 C -0.003 4.003 6 C 0.294 3.706 7 O -0.439 6.439 8 N -0.351 5.351 9 C 0.021 3.979 10 H 0.121 0.879 11 C -0.206 4.206 12 C 0.006 3.994 13 H 0.116 0.884 14 O -0.300 6.300 15 C 0.016 3.984 16 C -0.231 4.231 17 C -0.208 4.208 18 C -0.168 4.168 19 N -0.088 5.088 20 C -0.121 4.121 21 C -0.248 4.248 22 C -0.220 4.220 23 C -0.138 4.138 24 C -0.160 4.160 25 O -0.347 6.347 26 Si 0.695 3.305 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.177 0.823 37 H 0.253 0.747 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.109 0.891 48 H 0.122 0.878 49 H 0.172 0.828 50 H 0.158 0.842 51 H 0.180 0.820 52 H 0.153 0.847 53 H 0.230 0.770 54 H -0.216 1.216 55 H -0.231 1.231 Dipole moment (debyes) X Y Z Total from point charges -1.838 -0.036 3.321 3.796 hybrid contribution 0.337 1.406 0.384 1.496 sum -1.501 1.370 3.705 4.226 Atomic orbital electron populations 1.21930 0.94838 1.02428 1.02603 1.21493 0.96626 0.94477 1.02468 1.21525 0.97194 0.97894 0.94089 1.22163 0.94943 1.01438 1.03271 1.21986 1.02651 0.87661 0.87982 1.20939 0.81451 0.87693 0.80553 1.90772 1.34187 1.80173 1.38800 1.45746 1.40173 1.12135 1.37040 1.22130 0.97873 0.80000 0.97867 0.87894 1.23987 1.01029 0.96604 0.98933 1.23493 0.90902 0.91252 0.93733 0.88388 1.87959 1.48165 1.17925 1.75983 1.22290 0.97388 0.80634 0.98051 1.22308 1.00040 1.01648 0.99095 1.21883 0.95350 1.00962 1.02576 1.23550 1.03828 0.93650 0.95821 1.43498 1.05363 1.39480 1.20416 1.21876 0.85384 1.04032 1.00783 1.21072 0.98533 1.06135 0.99090 1.20875 0.91994 1.06916 1.02248 1.20908 0.94593 1.04844 0.93414 1.24903 0.87154 0.90681 1.13271 1.86420 1.71758 1.17059 1.59447 0.93385 0.77330 0.87614 0.72175 0.91748 0.92086 0.92370 0.92619 0.90829 0.87331 0.93755 0.90770 0.91868 0.82328 0.74662 0.88968 0.91614 0.91642 0.90619 0.92367 0.92312 0.89940 0.92483 0.92240 0.89135 0.87807 0.82795 0.84187 0.81996 0.84688 0.77006 1.21601 1.23063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.58 9.57 71.98 0.69 1.27 16 2 C -0.11 0.28 5.31 30.59 0.16 0.44 16 3 C -0.09 0.27 2.20 -10.79 -0.02 0.24 16 4 C -0.16 0.11 7.72 71.98 0.56 0.67 16 5 C 0.10 0.00 2.17 44.25 0.10 0.09 16 6 C 0.51 1.52 5.65 87.66 0.50 2.01 16 7 O -0.56 -6.56 14.74 -3.03 -0.04 -6.60 16 8 N -0.70 1.75 5.28 -440.04 -2.32 -0.58 16 9 C 0.13 -0.16 4.21 45.52 0.19 0.03 16 10 H 0.10 0.23 7.52 -2.39 -0.02 0.21 16 11 C -0.17 0.07 7.71 31.12 0.24 0.31 16 12 C 0.06 -0.09 4.13 31.12 0.13 0.04 16 13 H 0.10 -0.30 7.77 -2.39 -0.02 -0.32 16 14 O -0.38 -0.74 10.00 -148.98 -1.49 -2.23 16 15 C 0.07 -0.04 3.22 30.59 0.10 0.06 16 16 C -0.17 0.34 9.53 71.98 0.69 1.03 16 17 C -0.15 0.19 9.56 71.98 0.69 0.87 16 18 C -0.13 0.52 7.66 31.12 0.24 0.76 16 19 N -0.41 -1.61 1.61 -491.52 -0.79 -2.40 16 20 C 0.01 0.07 7.48 83.21 0.62 0.69 16 21 C -0.22 -1.51 10.86 22.14 0.24 -1.27 16 22 C -0.20 -0.78 9.43 22.14 0.21 -0.57 16 23 C -0.03 -0.08 5.93 41.08 0.24 0.16 16 24 C -0.05 0.04 2.30 71.24 0.16 0.21 16 25 O -0.54 0.25 9.03 -148.98 -1.35 -1.09 16 26 Si 0.79 -0.58 31.14 68.60 2.14 1.55 16 27 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H 0.06 -0.14 4.61 -2.38 -0.01 -0.15 16 29 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.06 0.08 7.19 -2.39 -0.02 0.06 16 31 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.11 -0.76 7.94 -2.38 -0.02 -0.78 16 33 H 0.04 0.09 6.87 -2.39 -0.02 0.07 16 34 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.06 0.12 5.38 -2.39 -0.01 0.11 16 36 H 0.16 -0.29 3.78 -2.39 -0.01 -0.29 16 37 H 0.42 -3.17 8.54 -92.71 -0.79 -3.96 16 38 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.07 -0.11 7.72 -2.39 -0.02 -0.13 16 41 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.08 -0.31 8.14 -2.38 -0.02 -0.33 16 45 H 0.06 -0.02 8.14 -2.39 -0.02 -0.03 16 46 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 47 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 48 H 0.10 -0.51 8.12 -2.38 -0.02 -0.53 16 49 H 0.15 1.12 6.28 -2.91 -0.02 1.10 16 50 H 0.14 0.64 8.06 -2.91 -0.02 0.62 16 51 H 0.16 -0.20 6.89 -2.91 -0.02 -0.22 16 52 H 0.14 -0.48 7.32 -2.38 -0.02 -0.50 16 53 H 0.38 -0.75 8.70 -74.06 -0.64 -1.40 16 54 H -0.29 -1.36 7.11 99.48 0.71 -0.65 16 55 H -0.30 -2.09 7.11 99.48 0.71 -1.39 16 Total: 0.00 -16.18 419.19 1.35 -14.82 By element: Atomic # 1 Polarization: -10.00 SS G_CDS: -0.51 Total: -10.51 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 5.72 Total: 7.04 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -3.12 Total: -2.98 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -2.88 Total: -9.93 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: 2.14 Total: 1.55 kcal Total: -16.18 1.35 -14.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_12360566.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.811 kcal (2) G-P(sol) polarization free energy of solvation -16.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds