Wall clock time and date at job start Sat Mar 6 2021 13:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47323 * 2 1 4 4 O 1.42896 * 109.47762 * 120.00613 * 2 1 3 5 5 C 1.42903 * 114.00052 * 89.99417 * 4 2 1 6 6 H 1.08993 * 112.84850 * 18.81097 * 5 4 2 7 7 C 1.53782 * 113.61197 * 150.00360 * 5 4 2 8 8 C 1.53782 * 87.08166 * 140.06406 * 7 5 4 9 9 H 1.09003 * 113.61227 * 89.19510 * 8 7 5 10 10 N 1.46500 * 113.61771 * 220.02125 * 8 7 5 11 11 C 1.34780 * 119.99775 * 205.00319 * 10 8 7 12 12 O 1.21697 * 120.00006 * 359.97438 * 11 10 8 13 13 C 1.46428 * 119.99640 * 180.02562 * 11 10 8 14 14 C 1.34811 * 119.99662 * 179.97438 * 13 11 10 15 15 C 1.47208 * 119.99605 * 179.97438 * 14 13 11 16 16 C 1.39835 * 120.16536 * 179.97438 * 15 14 13 17 17 C 1.37895 * 119.82663 * 179.97438 * 16 15 14 18 18 C 1.38404 * 120.16863 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.82755 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.47338 * 245.02354 * 19 18 17 21 21 Si 1.86305 * 109.46992 * 5.02589 * 19 18 17 22 22 C 1.38399 * 120.34408 * 0.02562 * 18 17 16 23 23 C 1.37896 * 120.17498 * 359.97438 * 22 18 17 24 24 C 1.53782 * 113.69139 * 247.53881 * 5 4 2 25 25 H 1.09004 * 109.46522 * 299.99715 * 1 2 3 26 26 H 1.08997 * 109.47600 * 59.99420 * 1 2 3 27 27 H 1.09004 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47125 * 240.00709 * 2 1 3 29 29 H 1.09000 * 109.47313 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47701 * 300.00785 * 3 2 1 31 31 H 1.09004 * 109.47088 * 60.00632 * 3 2 1 32 32 H 1.09000 * 113.61341 * 25.52026 * 7 5 4 33 33 H 1.08997 * 113.69095 * 254.62479 * 7 5 4 34 34 H 0.97000 * 120.00093 * 24.99465 * 10 8 7 35 35 H 1.07994 * 120.00148 * 359.97438 * 13 11 10 36 36 H 1.07994 * 120.00191 * 359.97438 * 14 13 11 37 37 H 1.07999 * 120.09097 * 359.69875 * 16 15 14 38 38 H 1.07999 * 119.91563 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.47204 * 125.02856 * 19 18 17 40 40 H 0.96709 * 113.99683 * 59.99945 * 20 19 18 41 41 H 1.48497 * 109.99985 * 58.67988 * 21 19 18 42 42 H 1.48498 * 109.99645 * 179.97438 * 21 19 18 43 43 H 1.08001 * 119.91532 * 179.97438 * 22 18 17 44 44 H 1.07996 * 120.08823 * 179.97438 * 23 22 18 45 45 H 1.09000 * 113.61723 * 105.45911 * 24 5 4 46 46 H 1.09004 * 113.61686 * 334.56061 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0065 -0.6737 1.1666 5 6 2.2001 -2.0783 0.9883 6 1 2.2732 -2.3657 -0.0605 7 6 3.3195 -2.6621 1.8664 8 6 2.4072 -3.8811 2.0819 9 1 2.5378 -4.6621 1.3327 10 7 2.4319 -4.3977 3.4526 11 6 2.1233 -5.6876 3.6922 12 8 1.8236 -6.4231 2.7700 13 6 2.1474 -6.2038 5.0623 14 6 1.8382 -7.4939 5.3020 15 6 1.8630 -8.0129 6.6793 16 6 1.5424 -9.3504 6.9321 17 6 1.5684 -9.8293 8.2249 18 6 1.9112 -8.9902 9.2708 19 6 1.9366 -9.5216 10.6808 20 8 0.9279 -8.8687 11.4542 21 14 1.6122 -11.3561 10.6589 22 6 2.2298 -7.6653 9.0287 23 6 2.2083 -7.1714 7.7414 24 6 1.2209 -2.9447 1.7978 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 3.5050 -2.0896 2.7752 33 1 4.2325 -2.8916 1.3170 34 1 2.6705 -3.8115 4.1876 35 1 2.4129 -5.5511 5.8806 36 1 1.5723 -8.1465 4.4837 37 1 1.2707 -10.0054 6.1175 38 1 1.3206 -10.8619 8.4219 39 1 2.9142 -9.3307 11.1235 40 1 0.0302 -8.9958 11.1174 41 1 2.6363 -12.0431 9.8315 42 1 1.6353 -11.8924 12.0435 43 1 2.4959 -7.0165 9.8500 44 1 2.4568 -6.1373 7.5540 45 1 0.4389 -3.4022 1.1917 46 1 0.8326 -2.4495 2.6878 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:13:29 Heat of formation + Delta-G solvation = -46.830264 kcal Electronic energy + Delta-G solvation = -24977.661157 eV Core-core repulsion = 21220.992062 eV Total energy + Delta-G solvation = -3756.669095 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.166 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.31493 -40.62448 -39.93856 -37.95500 -37.70295 -35.08305 -34.49621 -32.91225 -32.07863 -31.32378 -28.16484 -27.39425 -26.73377 -25.52739 -24.01530 -23.54341 -22.35936 -21.92315 -21.24909 -20.23762 -18.68017 -18.37401 -18.21867 -16.99213 -16.87271 -16.56758 -16.35115 -16.11007 -16.09396 -15.79572 -15.53035 -15.25917 -15.16618 -14.72234 -14.54465 -14.14269 -13.90743 -13.82894 -13.64669 -13.51638 -13.49516 -13.34674 -13.10074 -12.90603 -12.64708 -12.25083 -12.22770 -12.09847 -11.97853 -11.89164 -11.74562 -11.60501 -11.35626 -11.05675 -10.44926 -10.44120 -10.10821 -9.98488 -9.25577 -5.01144 -0.56405 0.39246 0.87578 1.29938 1.62611 1.95561 2.10092 2.19846 2.79941 2.81053 3.42146 3.48879 3.53878 3.59328 3.71107 3.78192 3.80738 3.86427 3.95854 3.97903 4.14175 4.15468 4.19292 4.26712 4.33423 4.36979 4.46222 4.50866 4.66484 4.71481 4.71984 4.80981 4.87203 4.88067 4.91487 4.92617 4.95332 4.99151 5.07490 5.10681 5.14468 5.27915 5.30465 5.37537 5.46931 5.50469 5.60016 5.89830 6.34947 6.51211 6.74993 7.17502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 C -0.150 4.150 4 O -0.381 6.381 5 C 0.065 3.935 6 H 0.101 0.899 7 C -0.133 4.133 8 C 0.121 3.879 9 H 0.104 0.896 10 N -0.701 5.701 11 C 0.544 3.456 12 O -0.591 6.591 13 C -0.214 4.214 14 C -0.017 4.017 15 C -0.083 4.083 16 C -0.095 4.095 17 C -0.122 4.122 18 C -0.113 4.113 19 C -0.074 4.074 20 O -0.555 6.555 21 Si 0.772 3.228 22 C -0.106 4.106 23 C -0.102 4.102 24 C -0.164 4.164 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.417 0.583 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.108 0.892 40 H 0.396 0.604 41 H -0.287 1.287 42 H -0.301 1.301 43 H 0.133 0.867 44 H 0.147 0.853 45 H 0.068 0.932 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 1.967 -0.463 2.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.016 3.984 3 C -0.208 4.208 4 O -0.301 6.301 5 C 0.007 3.993 6 H 0.118 0.882 7 C -0.171 4.171 8 C 0.015 3.985 9 H 0.122 0.878 10 N -0.352 5.352 11 C 0.334 3.666 12 O -0.473 6.473 13 C -0.234 4.234 14 C -0.037 4.037 15 C -0.083 4.083 16 C -0.112 4.112 17 C -0.139 4.139 18 C -0.113 4.113 19 C -0.184 4.184 20 O -0.363 6.363 21 Si 0.679 3.321 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.203 4.203 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.255 0.745 35 H 0.175 0.825 36 H 0.146 0.854 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.125 0.875 40 H 0.246 0.754 41 H -0.214 1.214 42 H -0.229 1.229 43 H 0.151 0.849 44 H 0.165 0.835 45 H 0.086 0.914 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.331 0.986 -0.407 1.116 hybrid contribution 0.449 0.579 0.110 0.741 sum 0.118 1.564 -0.297 1.597 Atomic orbital electron populations 1.22313 0.95717 1.02265 1.02809 1.22345 0.93975 0.94236 0.87814 1.21889 1.01698 0.94215 1.02961 1.87952 1.85799 1.19811 1.36497 1.23550 0.96089 0.80565 0.99130 0.88168 1.23567 0.97658 0.94416 1.01497 1.22165 0.97191 0.94559 0.84555 0.87821 1.45728 1.69053 1.10678 1.09715 1.18764 0.75931 0.82084 0.89782 1.90804 1.50501 1.58553 1.47457 1.22992 1.07366 0.97692 0.95334 1.22407 0.90947 0.95387 0.94928 1.19134 1.02101 0.94591 0.92474 1.21613 0.97444 0.94602 0.97585 1.21148 1.00476 0.99923 0.92402 1.20613 0.99927 0.95014 0.95773 1.25176 0.94676 1.09455 0.89139 1.86479 1.19541 1.76544 1.53705 0.93751 0.88522 0.72064 0.77772 1.21113 0.99043 0.95184 0.97087 1.21673 0.97885 1.00569 0.91818 1.23978 0.97798 0.97091 1.01470 0.92565 0.90586 0.92747 0.91166 0.92129 0.89928 0.92461 0.87969 0.89231 0.74530 0.82462 0.85428 0.83451 0.83513 0.87481 0.75437 1.21419 1.22896 0.84949 0.83525 0.91364 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.15 9.53 71.98 0.69 0.84 16 2 C 0.07 -0.03 3.33 30.59 0.10 0.07 16 3 C -0.15 0.23 9.56 71.98 0.69 0.92 16 4 O -0.38 -0.93 10.00 -148.98 -1.49 -2.42 16 5 C 0.07 -0.05 4.26 31.12 0.13 0.08 16 6 H 0.10 -0.28 7.45 -2.39 -0.02 -0.30 16 7 C -0.13 0.36 7.66 31.12 0.24 0.59 16 8 C 0.12 0.04 4.24 45.52 0.19 0.23 16 9 H 0.10 0.39 7.46 -2.39 -0.02 0.37 16 10 N -0.70 0.39 5.35 -444.24 -2.38 -1.99 16 11 C 0.54 2.60 7.74 86.37 0.67 3.27 16 12 O -0.59 -7.99 15.83 -4.34 -0.07 -8.06 16 13 C -0.21 0.08 9.41 23.62 0.22 0.30 16 14 C -0.02 -0.02 9.46 23.84 0.23 0.21 16 15 C -0.08 0.03 5.87 -20.15 -0.12 -0.09 16 16 C -0.09 0.16 9.80 22.58 0.22 0.38 16 17 C -0.12 0.31 8.65 22.23 0.19 0.50 16 18 C -0.11 0.13 5.36 -19.79 -0.11 0.02 16 19 C -0.07 0.10 2.80 71.24 0.20 0.30 16 20 O -0.55 0.33 12.83 -148.98 -1.91 -1.58 16 21 Si 0.77 -2.02 29.78 68.60 2.04 0.02 16 22 C -0.11 0.08 9.66 22.23 0.21 0.30 16 23 C -0.10 0.18 9.41 22.57 0.21 0.39 16 24 C -0.16 -0.06 7.71 31.12 0.24 0.18 16 25 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.07 -0.17 7.42 -2.38 -0.02 -0.19 16 29 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.10 -0.36 8.12 -2.39 -0.02 -0.38 16 33 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.42 -2.67 8.71 -92.71 -0.81 -3.47 16 35 H 0.16 -1.06 6.07 -2.91 -0.02 -1.08 16 36 H 0.13 0.36 7.52 -2.91 -0.02 0.33 16 37 H 0.15 -0.76 8.06 -2.91 -0.02 -0.78 16 38 H 0.15 -0.99 4.88 -2.91 -0.01 -1.00 16 39 H 0.11 -0.02 7.96 -2.39 -0.02 -0.04 16 40 H 0.40 -3.38 8.70 -74.05 -0.64 -4.03 16 41 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 42 H -0.30 -1.57 7.11 99.48 0.71 -0.86 16 43 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 44 H 0.15 -0.90 6.17 -2.91 -0.02 -0.92 16 45 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.09 0.10 8.14 -2.38 -0.02 0.08 16 Total: 0.00 -19.03 382.33 -0.01 -19.05 By element: Atomic # 1 Polarization: -13.10 SS G_CDS: -0.42 Total: -13.52 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 4.21 Total: 8.50 kcal Atomic # 7 Polarization: 0.39 SS G_CDS: -2.38 Total: -1.99 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -3.47 Total: -12.06 kcal Atomic # 14 Polarization: -2.02 SS G_CDS: 2.04 Total: 0.02 kcal Total: -19.03 -0.01 -19.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.785 kcal (2) G-P(sol) polarization free energy of solvation -19.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds