Wall clock time and date at job start Sat Mar 6 2021 13:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47387 * 2 1 4 4 O 1.42904 * 109.47019 * 119.99985 * 2 1 3 5 5 C 1.42902 * 113.99760 * 149.99661 * 4 2 1 6 6 H 1.08996 * 112.84988 * 341.19652 * 5 4 2 7 7 C 1.53774 * 113.68881 * 112.46547 * 5 4 2 8 8 C 1.53780 * 87.08297 * 139.99132 * 7 5 4 9 9 H 1.08998 * 113.69072 * 89.12427 * 8 7 5 10 10 N 1.46503 * 113.61748 * 220.01859 * 8 7 5 11 11 C 1.34772 * 119.99953 * 252.49488 * 10 8 7 12 12 O 1.21570 * 120.00105 * 0.02562 * 11 10 8 13 13 C 1.47721 * 119.99811 * 179.97438 * 11 10 8 14 14 C 1.39637 * 120.11847 * 179.72418 * 13 11 10 15 15 C 1.37855 * 119.87712 * 180.23403 * 14 13 11 16 16 C 1.50703 * 119.93564 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.46871 * 254.99826 * 16 15 14 18 18 Si 1.86300 * 109.47273 * 134.99892 * 16 15 14 19 19 C 1.38628 * 120.12452 * 0.06514 * 15 14 13 20 20 F 1.35095 * 119.88236 * 179.97438 * 19 15 14 21 21 C 1.38678 * 120.23725 * 359.95822 * 19 15 14 22 22 C 1.37813 * 120.11939 * 359.97438 * 21 19 15 23 23 C 1.53777 * 87.08116 * 334.56781 * 8 7 5 24 24 H 1.09001 * 109.46934 * 299.99947 * 1 2 3 25 25 H 1.08997 * 109.47415 * 59.99815 * 1 2 3 26 26 H 1.09003 * 109.47553 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46790 * 239.99603 * 2 1 3 28 28 H 1.09001 * 109.47041 * 60.00118 * 3 2 1 29 29 H 1.08996 * 109.46794 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47054 * 299.99937 * 3 2 1 31 31 H 1.09001 * 113.62000 * 25.44082 * 7 5 4 32 32 H 1.08999 * 113.61766 * 254.53826 * 7 5 4 33 33 H 0.96998 * 119.99526 * 72.49318 * 10 8 7 34 34 H 1.07995 * 120.05729 * 0.26099 * 14 13 11 35 35 H 1.08997 * 109.47294 * 14.99438 * 16 15 14 36 36 H 0.96698 * 114.00233 * 179.97438 * 17 16 15 37 37 H 1.48499 * 109.99931 * 59.99823 * 18 16 15 38 38 H 1.48503 * 109.99830 * 181.31603 * 18 16 15 39 39 H 1.08003 * 119.94065 * 180.02562 * 21 19 15 40 40 H 1.08000 * 120.06415 * 180.02562 * 22 21 19 41 41 H 1.08999 * 113.62125 * 139.97884 * 23 8 7 42 42 H 1.08999 * 113.61716 * 270.80192 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3246 0.9886 6 1 3.5126 -1.4893 -0.0602 7 6 4.4092 -0.6901 1.7980 8 6 4.8966 -2.1207 2.0822 9 1 5.5893 -2.5043 1.3331 10 7 5.3754 -2.3162 3.4529 11 6 6.6943 -2.4552 3.6926 12 8 7.4868 -2.4179 2.7714 13 6 7.1772 -2.6517 5.0747 14 6 8.5426 -2.8018 5.3253 15 6 8.9873 -2.9897 6.6165 16 6 10.4608 -3.1513 6.8885 17 8 10.7461 -4.5236 7.1669 18 14 10.9396 -2.1075 8.3555 19 6 8.0816 -3.0313 7.6652 20 9 8.5227 -3.2163 8.9286 21 6 6.7243 -2.8833 7.4220 22 6 6.2690 -2.6935 6.1351 23 6 3.4432 -2.5745 1.8668 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 4.0718 -0.1589 2.6880 32 1 5.1012 -0.1055 1.1919 33 1 4.7431 -2.3455 4.1879 34 1 9.2490 -2.7702 4.5090 35 1 11.0287 -2.8322 6.0146 36 1 11.6784 -4.7019 7.3514 37 1 10.1722 -2.5327 9.5535 38 1 12.3965 -2.2333 8.6144 39 1 6.0229 -2.9160 8.2426 40 1 5.2119 -2.5779 5.9468 41 1 3.3551 -3.5110 1.3161 42 1 2.8419 -2.5599 2.7758 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_12496548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:13:37 Heat of formation + Delta-G solvation = -92.998490 kcal Electronic energy + Delta-G solvation = -25129.461953 eV Core-core repulsion = 21185.100638 eV Total energy + Delta-G solvation = -3944.361315 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.40696 -41.59282 -40.47946 -39.42960 -37.90434 -37.71848 -34.74931 -33.18204 -32.71654 -31.77740 -28.13596 -27.05151 -26.69672 -26.08387 -24.06929 -23.35534 -22.30850 -21.48451 -20.97506 -19.00455 -18.80938 -18.62514 -18.30231 -17.77273 -17.00912 -16.70312 -16.65633 -16.17026 -16.10825 -15.59453 -15.38616 -15.29642 -15.10664 -14.94405 -14.69338 -14.07139 -13.92178 -13.87929 -13.71621 -13.47034 -13.42511 -13.33096 -13.07757 -12.90121 -12.61353 -12.33813 -12.19685 -11.97453 -11.86483 -11.57686 -11.42752 -11.12282 -10.79339 -10.41640 -10.20706 -10.10331 -9.80255 -4.97912 -0.51444 0.00232 1.20161 1.53110 1.56805 1.94115 1.98439 2.52015 2.80433 3.01737 3.18544 3.44238 3.55838 3.57844 3.59098 3.66701 3.83841 3.91120 3.97192 4.00541 4.10856 4.17312 4.24954 4.29674 4.38822 4.62746 4.68919 4.74478 4.75458 4.76008 4.83884 4.90079 4.91470 4.94003 4.97181 4.98593 5.02200 5.05834 5.11491 5.30559 5.32777 5.46186 5.59401 6.37407 6.43839 6.47174 7.09027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 C -0.174 4.174 4 O -0.381 6.381 5 C 0.064 3.936 6 H 0.100 0.900 7 C -0.164 4.164 8 C 0.122 3.878 9 H 0.107 0.893 10 N -0.698 5.698 11 C 0.563 3.437 12 O -0.575 6.575 13 C -0.155 4.155 14 C -0.019 4.019 15 C -0.126 4.126 16 C -0.084 4.084 17 O -0.555 6.555 18 Si 0.745 3.255 19 C 0.113 3.887 20 F -0.132 7.132 21 C -0.153 4.153 22 C -0.038 4.038 23 C -0.134 4.134 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.416 0.584 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.397 0.603 37 H -0.271 1.271 38 H -0.290 1.290 39 H 0.170 0.830 40 H 0.175 0.825 41 H 0.089 0.911 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 2.696 -1.290 5.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 C -0.231 4.231 4 O -0.300 6.300 5 C 0.005 3.995 6 H 0.118 0.882 7 C -0.203 4.203 8 C 0.017 3.983 9 H 0.125 0.875 10 N -0.350 5.350 11 C 0.352 3.648 12 O -0.455 6.455 13 C -0.158 4.158 14 C -0.038 4.038 15 C -0.127 4.127 16 C -0.192 4.192 17 O -0.366 6.366 18 Si 0.649 3.351 19 C 0.094 3.906 20 F -0.110 7.110 21 C -0.171 4.171 22 C -0.056 4.056 23 C -0.172 4.172 24 H 0.076 0.924 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.255 0.745 34 H 0.162 0.838 35 H 0.118 0.882 36 H 0.248 0.752 37 H -0.197 1.197 38 H -0.217 1.217 39 H 0.188 0.812 40 H 0.192 0.808 41 H 0.108 0.892 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.057 2.670 -1.028 4.964 hybrid contribution 0.931 -1.121 0.275 1.483 sum -3.125 1.549 -0.753 3.568 Atomic orbital electron populations 1.21891 0.93273 1.02716 1.02931 1.22331 0.95357 0.92781 0.87829 1.22312 1.01407 0.96620 1.02773 1.87951 1.36217 1.69439 1.36409 1.23555 0.83470 0.93278 0.99159 0.88236 1.23984 0.97658 0.97043 1.01582 1.22211 0.95227 0.96788 0.84091 0.87549 1.45711 1.06736 1.72547 1.10008 1.18321 0.82801 0.75485 0.88200 1.90787 1.55960 1.52259 1.46515 1.19955 0.94503 1.08121 0.93251 1.21025 0.95235 0.92414 0.95109 1.19293 0.94709 1.05828 0.92828 1.24854 0.94466 0.89036 1.10893 1.86553 1.33410 1.24097 1.92516 0.94637 0.76971 0.87252 0.76241 1.18235 0.93894 0.99747 0.78740 1.91537 1.89245 1.92296 1.37950 1.21403 0.93083 1.02966 0.99645 1.21506 1.00981 0.93037 0.90069 1.23583 0.93943 0.98072 1.01595 0.92433 0.90036 0.92146 0.91212 0.92520 0.92641 0.90725 0.88794 0.91210 0.74506 0.83786 0.88216 0.75239 1.19668 1.21726 0.81246 0.80797 0.89240 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.35 9.56 71.98 0.69 1.04 16 2 C 0.07 -0.11 3.33 30.59 0.10 -0.01 16 3 C -0.17 0.33 9.53 71.98 0.69 1.02 16 4 O -0.38 -0.36 10.00 -148.98 -1.49 -1.85 16 5 C 0.06 -0.16 4.26 31.12 0.13 -0.03 16 6 H 0.10 -0.43 7.45 -2.39 -0.02 -0.45 16 7 C -0.16 0.30 7.71 31.12 0.24 0.54 16 8 C 0.12 -0.24 4.24 45.52 0.19 -0.04 16 9 H 0.11 0.15 7.46 -2.39 -0.02 0.13 16 10 N -0.70 1.94 5.31 -443.03 -2.35 -0.41 16 11 C 0.56 1.94 7.77 86.75 0.67 2.61 16 12 O -0.57 -6.73 15.94 -3.94 -0.06 -6.79 16 13 C -0.16 -0.11 5.87 -20.09 -0.12 -0.23 16 14 C -0.02 -0.05 9.21 22.52 0.21 0.15 16 15 C -0.13 -0.41 4.80 -19.86 -0.10 -0.50 16 16 C -0.08 -0.14 2.79 71.24 0.20 0.06 16 17 O -0.56 -2.49 12.86 -148.98 -1.92 -4.40 16 18 Si 0.75 0.67 30.77 68.60 2.11 2.78 16 19 C 0.11 0.36 6.67 22.47 0.15 0.51 16 20 F -0.13 -0.95 12.84 44.97 0.58 -0.37 16 21 C -0.15 0.41 10.01 22.27 0.22 0.63 16 22 C -0.04 0.19 9.54 22.52 0.21 0.40 16 23 C -0.13 0.62 7.66 31.12 0.24 0.86 16 24 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.07 -0.24 7.42 -2.38 -0.02 -0.26 16 28 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.42 -3.76 6.76 -92.71 -0.63 -4.39 16 34 H 0.14 0.48 7.58 -2.91 -0.02 0.46 16 35 H 0.10 -0.24 7.77 -2.39 -0.02 -0.26 16 36 H 0.40 -1.42 8.74 -74.06 -0.65 -2.07 16 37 H -0.27 -2.10 5.33 99.48 0.53 -1.57 16 38 H -0.29 -1.40 7.11 99.48 0.71 -0.69 16 39 H 0.17 -1.27 8.06 -2.91 -0.02 -1.30 16 40 H 0.17 -2.23 6.40 -2.91 -0.02 -2.24 16 41 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.10 -0.62 8.12 -2.39 -0.02 -0.64 16 Total: 0.00 -19.32 352.16 0.24 -19.09 By element: Atomic # 1 Polarization: -14.71 SS G_CDS: -0.37 Total: -15.07 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 3.73 Total: 7.03 kcal Atomic # 7 Polarization: 1.94 SS G_CDS: -2.35 Total: -0.41 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -3.47 Total: -13.04 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.58 Total: -0.37 kcal Atomic # 14 Polarization: 0.67 SS G_CDS: 2.11 Total: 2.78 kcal Total: -19.32 0.24 -19.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_12496548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.913 kcal (2) G-P(sol) polarization free energy of solvation -19.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds