Wall clock time and date at job start Sat Mar 6 2021 13:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47488 * 2 1 4 4 O 1.42900 * 109.46968 * 120.00422 * 2 1 3 5 5 C 1.42893 * 114.00730 * 90.00026 * 4 2 1 6 6 H 1.09009 * 112.84542 * 341.19280 * 5 4 2 7 7 C 1.53779 * 113.61865 * 112.49717 * 5 4 2 8 8 C 1.53783 * 87.07897 * 139.98334 * 7 5 4 9 9 H 1.09007 * 113.68859 * 89.13186 * 8 7 5 10 10 N 1.46497 * 113.61394 * 220.01731 * 8 7 5 11 11 C 1.34776 * 120.00249 * 252.50007 * 10 8 7 12 12 O 1.21566 * 120.00099 * 0.02562 * 11 10 8 13 13 C 1.47727 * 120.00117 * 179.97438 * 11 10 8 14 14 C 1.39708 * 120.02310 * 179.97438 * 13 11 10 15 15 C 1.37667 * 119.97073 * 180.02562 * 14 13 11 16 16 C 1.39502 * 120.02851 * 0.02867 * 15 14 13 17 17 C 1.48276 * 119.97660 * 179.97438 * 16 15 14 18 18 C 1.39399 * 120.12762 * 179.97438 * 17 16 15 19 19 C 1.37998 * 119.87391 * 179.97438 * 18 17 16 20 20 C 1.38337 * 120.12291 * 359.97326 * 19 18 17 21 21 C 1.50706 * 119.86668 * 180.02562 * 20 19 18 22 22 O 1.42903 * 109.47186 * 65.00384 * 21 20 19 23 23 Si 1.86302 * 109.46768 * 185.00064 * 21 20 19 24 24 C 1.38327 * 120.25768 * 0.28033 * 20 19 18 25 25 C 1.37998 * 120.13031 * 359.48861 * 24 20 19 26 26 C 1.39510 * 120.04579 * 0.22762 * 16 15 14 27 27 C 1.37662 * 120.02183 * 359.48952 * 26 16 15 28 28 C 1.53776 * 87.08581 * 334.56935 * 8 7 5 29 29 H 1.09000 * 109.47138 * 59.99771 * 1 2 3 30 30 H 1.09000 * 109.46825 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46929 * 299.99962 * 1 2 3 32 32 H 1.09008 * 109.46935 * 239.99804 * 2 1 3 33 33 H 1.08999 * 109.47744 * 180.02562 * 3 2 1 34 34 H 1.09010 * 109.46968 * 300.00350 * 3 2 1 35 35 H 1.08996 * 109.47083 * 59.99557 * 3 2 1 36 36 H 1.08996 * 113.61115 * 25.43528 * 7 5 4 37 37 H 1.09004 * 113.61436 * 254.52979 * 7 5 4 38 38 H 0.96999 * 119.99764 * 72.50279 * 10 8 7 39 39 H 1.07997 * 120.01344 * 0.02562 * 14 13 11 40 40 H 1.08004 * 119.97969 * 180.02562 * 15 14 13 41 41 H 1.08002 * 120.06246 * 359.95311 * 18 17 16 42 42 H 1.07999 * 119.94051 * 180.02562 * 19 18 17 43 43 H 1.08992 * 109.47155 * 304.99981 * 21 20 19 44 44 H 0.96698 * 113.99763 * 59.99746 * 22 21 20 45 45 H 1.48503 * 109.99841 * 58.68268 * 23 21 20 46 46 H 1.48504 * 109.99775 * 180.02562 * 23 21 20 47 47 H 1.08008 * 119.93523 * 179.72420 * 24 20 19 48 48 H 1.07997 * 120.07055 * 180.25556 * 25 24 20 49 49 H 1.07995 * 119.98113 * 179.74495 * 26 16 15 50 50 H 1.08000 * 120.01075 * 180.27586 * 27 26 16 51 51 H 1.09000 * 113.61926 * 139.97866 * 28 8 7 52 52 H 1.09000 * 113.61268 * 270.89086 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9887 6 1 1.6626 -2.4737 0.1267 7 6 3.6751 -2.5091 1.0479 8 6 3.2022 -3.7393 1.8403 9 1 2.9398 -4.5905 1.2120 10 7 4.0911 -4.1017 2.9470 11 6 4.8684 -5.1989 2.8554 12 8 4.8323 -5.8876 1.8543 13 6 5.7651 -5.5640 3.9712 14 6 6.5707 -6.7016 3.8770 15 6 7.4056 -7.0411 4.9177 16 6 7.4470 -6.2502 6.0661 17 6 8.3462 -6.6173 7.1864 18 6 8.3904 -5.8290 8.3352 19 6 9.2289 -6.1758 9.3750 20 6 10.0240 -7.3037 9.2790 21 6 10.9371 -7.6774 10.4183 22 8 10.1543 -8.0124 11.5659 23 14 11.9762 -9.1433 9.9260 24 6 9.9882 -8.0869 8.1394 25 6 9.1501 -7.7525 7.0952 26 6 6.6390 -5.1171 6.1633 27 6 5.8077 -4.7724 5.1215 28 6 1.9909 -2.8968 2.2736 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8899 36 1 4.3046 -1.8327 1.6262 37 1 4.0981 -2.7535 0.0735 38 1 4.1201 -3.5520 3.7456 39 1 6.5385 -7.3143 2.9883 40 1 8.0287 -7.9203 4.8448 41 1 7.7700 -4.9482 8.4112 42 1 9.2637 -5.5660 10.2657 43 1 11.5866 -6.8347 10.6548 44 1 9.5516 -8.7558 11.4276 45 1 12.7713 -8.8183 8.7145 46 1 12.8806 -9.5222 11.0412 47 1 10.6145 -8.9639 8.0682 48 1 9.1199 -8.3670 6.2076 49 1 6.6689 -4.5078 7.0545 50 1 5.1856 -3.8927 5.1952 51 1 1.0543 -3.4542 2.2887 52 1 2.1601 -2.3265 3.1869 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:13:56 Heat of formation + Delta-G solvation = -32.449207 kcal Electronic energy + Delta-G solvation = -31069.360667 eV Core-core repulsion = 26773.099141 eV Total energy + Delta-G solvation = -4296.261526 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.62168 -40.92271 -40.20026 -39.17628 -37.87996 -37.49120 -34.81932 -33.88802 -32.93004 -32.50847 -31.57407 -30.76391 -28.14965 -27.19970 -26.78108 -25.55365 -24.66126 -24.02084 -22.60151 -22.39558 -22.12495 -21.37087 -21.02826 -19.16856 -18.41918 -18.36545 -17.72961 -17.09858 -16.78117 -16.61502 -16.32946 -16.19975 -15.96382 -15.79325 -15.72744 -15.39778 -15.12474 -15.04307 -14.91487 -14.79850 -14.36443 -14.30856 -14.11848 -14.04462 -13.61288 -13.58653 -13.51980 -13.28323 -13.17648 -13.06541 -12.75608 -12.63624 -12.54016 -12.30342 -12.12458 -12.08126 -11.94394 -11.82426 -11.60466 -11.59191 -11.09973 -10.77464 -10.43663 -10.41459 -10.14097 -10.07004 -9.95845 -9.07992 -5.01284 -0.69967 0.34339 0.40363 0.49359 1.30372 1.62321 1.75758 1.95621 1.98970 2.59656 2.78476 3.00431 3.37659 3.43219 3.51301 3.54267 3.63153 3.67460 3.77451 3.80068 3.86288 3.87428 4.00041 4.01257 4.05174 4.12435 4.26429 4.27894 4.28154 4.33843 4.37082 4.47501 4.63489 4.66065 4.67388 4.70783 4.72710 4.80538 4.86625 4.89083 4.90692 4.91461 4.95834 4.97722 5.05043 5.08392 5.13566 5.20231 5.25832 5.28260 5.30470 5.41099 5.44796 5.49938 5.65033 5.79159 5.93039 6.33845 6.42517 6.75649 7.08390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 C -0.150 4.150 4 O -0.381 6.381 5 C 0.065 3.935 6 H 0.100 0.900 7 C -0.166 4.166 8 C 0.121 3.879 9 H 0.106 0.894 10 N -0.700 5.700 11 C 0.557 3.443 12 O -0.580 6.580 13 C -0.153 4.153 14 C -0.070 4.070 15 C -0.122 4.122 16 C -0.022 4.022 17 C -0.060 4.060 18 C -0.108 4.108 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.074 4.074 22 O -0.555 6.555 23 Si 0.772 3.228 24 C -0.118 4.118 25 C -0.106 4.106 26 C -0.121 4.121 27 C -0.075 4.075 28 C -0.132 4.132 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.415 0.585 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.131 0.869 43 H 0.106 0.894 44 H 0.395 0.605 45 H -0.287 1.287 46 H -0.301 1.301 47 H 0.147 0.853 48 H 0.148 0.852 49 H 0.155 0.845 50 H 0.155 0.845 51 H 0.090 0.910 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 0.885 1.072 3.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.016 3.984 3 C -0.208 4.208 4 O -0.301 6.301 5 C 0.007 3.993 6 H 0.118 0.882 7 C -0.205 4.205 8 C 0.016 3.984 9 H 0.124 0.876 10 N -0.352 5.352 11 C 0.347 3.653 12 O -0.461 6.461 13 C -0.156 4.156 14 C -0.088 4.088 15 C -0.139 4.139 16 C -0.022 4.022 17 C -0.060 4.060 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.184 4.184 22 O -0.363 6.363 23 Si 0.678 3.322 24 C -0.136 4.136 25 C -0.124 4.124 26 C -0.139 4.139 27 C -0.093 4.093 28 C -0.170 4.170 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.253 0.747 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.149 0.851 43 H 0.124 0.876 44 H 0.245 0.755 45 H -0.214 1.214 46 H -0.229 1.229 47 H 0.164 0.836 48 H 0.165 0.835 49 H 0.172 0.828 50 H 0.173 0.827 51 H 0.109 0.891 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.562 0.711 0.658 1.838 hybrid contribution 0.078 0.778 0.012 0.782 sum -1.484 1.489 0.670 2.206 Atomic orbital electron populations 1.22311 0.95357 1.02525 1.02917 1.22296 0.94114 0.94094 0.87883 1.21880 1.01528 0.94326 1.03023 1.87957 1.85982 1.19776 1.36341 1.23496 0.95511 0.81369 0.98941 0.88169 1.23995 0.98054 0.97239 1.01243 1.22205 0.90717 0.96297 0.89201 0.87610 1.45744 1.41575 1.27008 1.20859 1.18598 0.79865 0.80350 0.86522 1.90762 1.68642 1.53291 1.33409 1.19994 1.00935 0.99120 0.95556 1.21275 0.93571 0.95118 0.98882 1.21401 0.99417 1.00734 0.92366 1.19154 0.95044 0.94914 0.93126 1.18935 0.97133 0.96216 0.93745 1.21513 0.98760 0.99909 0.92409 1.21102 0.95632 0.96495 0.98863 1.20533 0.98900 0.96488 0.96043 1.25162 0.97906 1.08447 0.86870 1.86474 1.58406 1.56809 1.34631 0.93770 0.79902 0.82410 0.76071 1.21138 0.99407 0.99817 0.93191 1.21495 0.95040 0.96322 0.99528 1.21461 0.95790 0.96769 0.99850 1.21455 0.97738 0.98772 0.91383 1.23564 0.98096 0.96429 0.98923 0.90613 0.92350 0.92375 0.91533 0.92446 0.89946 0.92286 0.88964 0.91256 0.74674 0.85269 0.83205 0.83738 0.85137 0.87624 0.75473 1.21362 1.22924 0.83609 0.83453 0.82782 0.82726 0.89112 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.33 9.53 71.98 0.69 1.02 16 2 C 0.07 -0.04 3.22 30.59 0.10 0.06 16 3 C -0.15 0.20 9.56 71.98 0.69 0.88 16 4 O -0.38 -0.81 10.00 -148.98 -1.49 -2.30 16 5 C 0.07 -0.07 4.13 31.12 0.13 0.06 16 6 H 0.10 -0.30 7.77 -2.38 -0.02 -0.32 16 7 C -0.17 -0.03 7.71 31.12 0.24 0.21 16 8 C 0.12 0.03 4.24 45.52 0.19 0.22 16 9 H 0.11 0.37 7.46 -2.38 -0.02 0.35 16 10 N -0.70 0.04 5.30 -443.02 -2.35 -2.31 16 11 C 0.56 3.49 7.77 86.75 0.67 4.16 16 12 O -0.58 -8.41 15.93 -3.92 -0.06 -8.47 16 13 C -0.15 -0.45 5.88 -20.06 -0.12 -0.57 16 14 C -0.07 -0.25 9.58 22.49 0.22 -0.03 16 15 C -0.12 -0.02 9.41 22.44 0.21 0.19 16 16 C -0.02 0.01 5.88 -20.00 -0.12 -0.11 16 17 C -0.06 0.04 5.88 -20.05 -0.12 -0.07 16 18 C -0.11 0.17 9.43 22.49 0.21 0.38 16 19 C -0.10 0.05 9.67 22.24 0.21 0.27 16 20 C -0.12 0.12 5.36 -19.82 -0.11 0.02 16 21 C -0.07 0.09 2.80 71.24 0.20 0.29 16 22 O -0.56 0.21 12.83 -148.98 -1.91 -1.70 16 23 Si 0.77 -1.96 29.79 68.60 2.04 0.08 16 24 C -0.12 0.32 8.65 22.23 0.19 0.51 16 25 C -0.11 0.23 9.43 22.49 0.21 0.44 16 26 C -0.12 0.33 9.41 22.44 0.21 0.55 16 27 C -0.08 0.20 9.52 22.49 0.21 0.41 16 28 C -0.13 0.40 7.66 31.12 0.24 0.64 16 29 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.07 -0.13 7.73 -2.38 -0.02 -0.14 16 33 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.08 -0.32 8.14 -2.38 -0.02 -0.34 16 35 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.07 0.11 8.14 -2.38 -0.02 0.09 16 38 H 0.41 -2.44 6.74 -92.71 -0.63 -3.07 16 39 H 0.13 0.63 7.64 -2.91 -0.02 0.61 16 40 H 0.15 -0.61 6.19 -2.91 -0.02 -0.63 16 41 H 0.14 -0.83 6.19 -2.91 -0.02 -0.84 16 42 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 43 H 0.11 0.01 7.96 -2.39 -0.02 -0.01 16 44 H 0.40 -3.30 8.70 -74.06 -0.64 -3.95 16 45 H -0.29 -0.67 7.11 99.48 0.71 0.04 16 46 H -0.30 -1.60 7.11 99.48 0.71 -0.89 16 47 H 0.15 -1.00 4.89 -2.91 -0.01 -1.01 16 48 H 0.15 -0.90 6.19 -2.91 -0.02 -0.92 16 49 H 0.15 -1.16 6.19 -2.91 -0.02 -1.18 16 50 H 0.16 -1.38 6.39 -2.91 -0.02 -1.40 16 51 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 52 H 0.10 -0.42 8.12 -2.39 -0.02 -0.44 16 Total: 0.00 -20.71 422.26 0.33 -20.39 By element: Atomic # 1 Polarization: -14.94 SS G_CDS: -0.27 Total: -15.21 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 4.37 Total: 9.53 kcal Atomic # 7 Polarization: 0.04 SS G_CDS: -2.35 Total: -2.31 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -3.46 Total: -12.48 kcal Atomic # 14 Polarization: -1.96 SS G_CDS: 2.04 Total: 0.08 kcal Total: -20.71 0.33 -20.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.061 kcal (2) G-P(sol) polarization free energy of solvation -20.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds