Wall clock time and date at job start Sat Mar 6 2021 13:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47154 * 2 1 4 4 O 1.42893 * 109.47245 * 120.00161 * 2 1 3 5 5 C 1.42897 * 114.00333 * 150.00229 * 4 2 1 6 6 H 1.09000 * 112.84808 * 18.80542 * 5 4 2 7 7 C 1.53780 * 113.61783 * 150.00013 * 5 4 2 8 8 C 1.53777 * 87.08447 * 140.06604 * 7 5 4 9 9 H 1.08997 * 113.61783 * 89.19904 * 8 7 5 10 10 N 1.46502 * 113.61689 * 220.02063 * 8 7 5 11 11 C 1.34770 * 120.00001 * 205.00273 * 10 8 7 12 12 O 1.21646 * 120.00265 * 359.97438 * 11 10 8 13 13 C 1.47066 * 120.00036 * 180.02562 * 11 10 8 14 14 C 1.35857 * 125.42793 * 179.97438 * 13 11 10 15 15 C 1.41589 * 107.72929 * 180.02562 * 14 13 11 16 16 C 1.40073 * 133.38121 * 180.24361 * 15 14 13 17 17 C 1.36473 * 119.82685 * 180.21103 * 16 15 14 18 18 C 1.38899 * 120.61501 * 359.49155 * 17 16 15 19 19 C 1.50703 * 119.67611 * 180.25830 * 18 17 16 20 20 O 1.42902 * 109.47172 * 120.00007 * 19 18 17 21 21 Si 1.86302 * 109.46873 * 0.02562 * 19 18 17 22 22 C 1.37713 * 120.65356 * 0.28529 * 18 17 16 23 23 C 1.39187 * 119.80427 * 359.96932 * 22 18 17 24 24 N 1.37485 * 133.18594 * 179.97438 * 23 22 18 25 25 C 1.53778 * 87.07906 * 334.56915 * 8 7 5 26 26 H 1.08992 * 109.47374 * 299.99459 * 1 2 3 27 27 H 1.09002 * 109.47237 * 60.00457 * 1 2 3 28 28 H 1.09005 * 109.46841 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47184 * 240.00046 * 2 1 3 30 30 H 1.08995 * 109.47454 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46731 * 300.00392 * 3 2 1 32 32 H 1.09003 * 109.46693 * 59.99576 * 3 2 1 33 33 H 1.08998 * 113.61302 * 25.51499 * 7 5 4 34 34 H 1.09004 * 113.61800 * 254.61594 * 7 5 4 35 35 H 0.97005 * 119.99667 * 24.99309 * 10 8 7 36 36 H 1.08005 * 126.13641 * 359.97438 * 14 13 11 37 37 H 1.07994 * 120.08489 * 359.97438 * 16 15 14 38 38 H 1.08002 * 119.69380 * 179.77823 * 17 16 15 39 39 H 1.08998 * 109.47288 * 240.00282 * 19 18 17 40 40 H 0.96700 * 113.99586 * 179.97438 * 20 19 18 41 41 H 1.48498 * 110.00210 * 59.99977 * 21 19 18 42 42 H 1.48497 * 109.99904 * 181.32057 * 21 19 18 43 43 H 1.07992 * 120.09735 * 180.02562 * 22 18 17 44 44 H 0.96996 * 125.60741 * 0.02562 * 24 23 22 45 45 H 1.09003 * 113.61423 * 139.98617 * 25 8 7 46 46 H 1.09003 * 113.61497 * 270.88095 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2660 -1.3244 0.9886 6 1 3.8179 -0.9495 0.1267 7 6 4.1074 -1.4002 2.2735 8 6 4.4998 -2.8222 1.8391 9 1 5.3898 -2.8569 1.2109 10 7 4.5463 -3.7819 2.9451 11 6 5.3230 -4.8794 2.8527 12 8 5.9852 -5.0734 1.8509 13 6 5.3692 -5.8430 3.9627 14 6 6.1102 -6.9815 3.9869 15 6 5.8737 -7.6237 5.2264 16 6 6.3536 -8.8058 5.8045 17 6 5.9273 -9.1755 7.0471 18 6 5.0283 -8.3844 7.7509 19 6 4.5762 -8.8099 9.1241 20 8 4.9357 -7.8066 10.0761 21 14 5.3988 -10.4187 9.5779 22 6 4.5456 -7.2154 7.2061 23 6 4.9614 -6.8198 5.9380 24 7 4.6656 -5.7351 5.1467 25 6 3.1824 -2.8588 1.0467 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 3.5133 -1.3709 3.1868 34 1 4.9443 -0.7019 2.2893 35 1 4.0180 -3.6273 3.7439 36 1 6.7622 -7.3339 3.2012 37 1 7.0561 -9.4251 5.2666 38 1 6.2960 -10.0892 7.4893 39 1 3.4942 -8.9415 9.1259 40 1 4.6745 -8.0141 10.9838 41 1 6.8744 -10.2521 9.5792 42 1 4.9369 -10.8654 10.9167 43 1 3.8472 -6.6070 7.7614 44 1 4.0621 -5.0129 5.3811 45 1 3.2725 -3.3383 0.0719 46 1 2.3353 -3.2285 1.6246 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10905398_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:14:01 Heat of formation + Delta-G solvation = -26.544690 kcal Electronic energy + Delta-G solvation = -27155.631240 eV Core-core repulsion = 23206.189743 eV Total energy + Delta-G solvation = -3949.441498 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.65247 -41.18764 -39.91945 -38.86041 -37.90028 -37.06868 -34.65898 -33.28995 -32.95023 -31.10430 -30.38731 -28.24572 -27.26805 -26.88059 -25.45588 -23.95050 -22.97952 -22.30547 -21.87446 -21.40548 -20.91582 -19.42833 -18.55491 -18.45556 -17.88582 -17.15964 -16.77449 -16.68708 -16.36923 -16.22371 -15.88420 -15.58069 -15.32125 -15.07147 -14.92825 -14.80915 -14.62175 -14.24937 -14.21714 -13.85056 -13.69683 -13.61916 -13.48441 -13.30694 -13.17539 -12.76197 -12.64439 -12.40690 -12.30289 -12.18179 -12.09520 -11.91004 -11.67366 -11.65320 -11.19752 -10.90283 -10.49902 -10.48925 -10.21328 -9.27186 -8.77260 -4.94233 -0.29595 0.57143 1.02823 1.28594 1.61064 1.78158 1.90657 1.98523 2.27165 2.69387 2.77200 3.30124 3.32954 3.41434 3.58424 3.64650 3.70177 3.76081 3.85656 3.91510 4.03753 4.05822 4.18899 4.21871 4.24266 4.33929 4.40832 4.49741 4.55664 4.59653 4.61371 4.62306 4.69381 4.78318 4.82921 4.86528 4.88620 4.94120 4.95925 5.00737 5.19247 5.21621 5.27711 5.41854 5.44075 5.59023 5.65391 6.00552 6.21277 6.27045 6.37265 6.41277 6.99899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.176 4.176 4 O -0.366 6.366 5 C 0.067 3.933 6 H 0.093 0.907 7 C -0.144 4.144 8 C 0.125 3.875 9 H 0.123 0.877 10 N -0.716 5.716 11 C 0.587 3.413 12 O -0.517 6.517 13 C 0.011 3.989 14 C -0.098 4.098 15 C -0.117 4.117 16 C -0.050 4.050 17 C -0.143 4.143 18 C -0.041 4.041 19 C -0.077 4.077 20 O -0.537 6.537 21 Si 0.687 3.313 22 C -0.103 4.103 23 C 0.116 3.884 24 N -0.579 5.579 25 C -0.168 4.168 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.398 0.602 36 H 0.159 0.841 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.077 0.923 40 H 0.380 0.620 41 H -0.254 1.254 42 H -0.262 1.262 43 H 0.125 0.875 44 H 0.417 0.583 45 H 0.077 0.923 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.575 0.195 0.260 3.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.234 4.234 4 O -0.285 6.285 5 C 0.009 3.991 6 H 0.111 0.889 7 C -0.182 4.182 8 C 0.020 3.980 9 H 0.141 0.859 10 N -0.367 5.367 11 C 0.374 3.626 12 O -0.392 6.392 13 C -0.098 4.098 14 C -0.125 4.125 15 C -0.122 4.122 16 C -0.069 4.069 17 C -0.161 4.161 18 C -0.043 4.043 19 C -0.186 4.186 20 O -0.344 6.344 21 Si 0.588 3.412 22 C -0.124 4.124 23 C 0.006 3.994 24 N -0.183 5.183 25 C -0.207 4.207 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.232 0.768 36 H 0.176 0.824 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.095 0.905 40 H 0.228 0.772 41 H -0.179 1.179 42 H -0.188 1.188 43 H 0.143 0.857 44 H 0.255 0.745 45 H 0.096 0.904 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.506 0.089 -0.322 2.528 hybrid contribution -0.762 1.341 1.319 2.029 sum -3.268 1.430 0.997 3.704 Atomic orbital electron populations 1.21872 0.93415 1.02803 1.02734 1.22182 0.95208 0.92483 0.87972 1.22335 1.01504 0.96708 1.02839 1.87980 1.35546 1.69307 1.35645 1.23402 0.85568 0.92078 0.98095 0.88930 1.23633 0.99691 0.95795 0.99100 1.22278 0.99248 0.87566 0.88918 0.85925 1.45797 1.47117 1.23249 1.20525 1.17225 0.79415 0.80380 0.85592 1.90874 1.43077 1.75077 1.30197 1.20070 1.02030 0.99643 0.88024 1.20971 1.00778 0.93371 0.97372 1.18222 1.01306 0.97267 0.95387 1.20350 0.97971 0.94176 0.94374 1.20413 0.99504 1.00364 0.95865 1.18928 0.96955 0.94782 0.93644 1.24826 1.03603 1.01456 0.88714 1.86594 1.83493 1.44219 1.20086 0.94910 0.81044 0.80380 0.84893 1.19824 1.02958 0.97474 0.92130 1.18280 0.98870 0.88826 0.93393 1.41878 1.40727 1.21621 1.14124 1.24033 0.98228 0.96746 1.01716 0.91731 0.91091 0.91966 0.92034 0.92472 0.91491 0.91699 0.88570 0.89851 0.76807 0.82356 0.84874 0.85270 0.90484 0.77228 1.17859 1.18787 0.85672 0.74517 0.90381 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.12 9.56 37.16 0.36 0.48 16 2 C 0.08 -0.03 3.22 -26.73 -0.09 -0.12 16 3 C -0.18 0.17 9.53 37.16 0.35 0.52 16 4 O -0.37 -0.32 10.00 -35.23 -0.35 -0.67 16 5 C 0.07 -0.06 4.13 -25.92 -0.11 -0.16 16 6 H 0.09 -0.17 7.77 -51.93 -0.40 -0.57 16 7 C -0.14 0.24 7.66 -25.92 -0.20 0.04 16 8 C 0.12 -0.08 4.24 -67.12 -0.28 -0.37 16 9 H 0.12 0.05 7.46 -51.93 -0.39 -0.34 16 10 N -0.72 0.48 5.35 -54.21 -0.29 0.19 16 11 C 0.59 1.35 7.80 -12.68 -0.10 1.25 16 12 O -0.52 -2.98 16.44 5.24 0.09 -2.89 16 13 C 0.01 0.02 6.97 -82.29 -0.57 -0.55 16 14 C -0.10 -0.23 10.53 -39.16 -0.41 -0.65 16 15 C -0.12 -0.27 6.16 -106.93 -0.66 -0.93 16 16 C -0.05 -0.05 10.06 -39.53 -0.40 -0.45 16 17 C -0.14 -0.10 8.59 -39.97 -0.34 -0.44 16 18 C -0.04 -0.05 5.43 -104.57 -0.57 -0.62 16 19 C -0.08 0.02 2.80 36.01 0.10 0.12 16 20 O -0.54 -0.50 12.73 -35.23 -0.45 -0.95 16 21 Si 0.69 -0.69 29.75 -169.99 -5.06 -5.75 16 22 C -0.10 -0.14 9.61 -39.42 -0.38 -0.52 16 23 C 0.12 0.20 7.25 -83.97 -0.61 -0.41 16 24 N -0.58 0.04 6.07 -7.35 -0.04 -0.01 16 25 C -0.17 0.11 7.71 -25.92 -0.20 -0.09 16 26 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 27 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 28 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.06 -0.07 7.73 -51.93 -0.40 -0.47 16 30 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 33 H 0.10 -0.18 8.12 -51.93 -0.42 -0.60 16 34 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 35 H 0.40 -1.26 7.78 -40.82 -0.32 -1.58 16 36 H 0.16 0.25 8.06 -52.48 -0.42 -0.17 16 37 H 0.13 -0.16 8.06 -52.49 -0.42 -0.59 16 38 H 0.13 -0.17 4.82 -52.49 -0.25 -0.42 16 39 H 0.08 -0.16 7.96 -51.93 -0.41 -0.57 16 40 H 0.38 -1.14 8.74 45.56 0.40 -0.75 16 41 H -0.25 -0.57 7.11 56.52 0.40 -0.17 16 42 H -0.26 -0.26 7.11 56.52 0.40 0.14 16 43 H 0.13 0.03 8.06 -52.49 -0.42 -0.40 16 44 H 0.42 -1.30 8.12 -40.82 -0.33 -1.63 16 45 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 46 H 0.09 -0.02 8.14 -51.93 -0.42 -0.45 16 LS Contribution 381.76 15.07 5.75 5.75 Total: 0.00 -8.46 381.76 -11.26 -19.72 By element: Atomic # 1 Polarization: -5.70 SS G_CDS: -6.80 Total: -12.50 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -4.11 Total: -2.90 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -0.33 Total: 0.18 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.71 Total: -4.51 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: -5.06 Total: -5.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -8.46 -11.26 -19.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.822 kcal (2) G-P(sol) polarization free energy of solvation -8.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds