Wall clock time and date at job start Sat Mar 6 2021 13:15:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53002 * 109.46599 * 2 1
4 4 O 1.42896 * 109.47394 * 119.99931 * 2 1 3
5 5 C 1.42894 * 113.99918 * 89.99946 * 4 2 1
6 6 H 1.08994 * 112.85423 * 341.19861 * 5 4 2
7 7 C 1.53782 * 113.68787 * 112.46876 * 5 4 2
8 8 C 1.53786 * 87.08345 * 139.99309 * 7 5 4
9 9 H 1.09005 * 113.69307 * 89.12345 * 8 7 5
10 10 N 1.46497 * 113.61596 * 220.02034 * 8 7 5
11 11 C 1.34773 * 120.00039 * 252.49586 * 10 8 7
12 12 O 1.21279 * 120.00062 * 359.97438 * 11 10 8
13 13 C 1.50695 * 120.00441 * 179.97438 * 11 10 8
14 14 C 1.52997 * 109.47483 * 179.97438 * 13 11 10
15 15 O 1.42900 * 109.47009 * 180.02562 * 14 13 11
16 16 C 1.35904 * 117.00131 * 180.02562 * 15 14 13
17 17 C 1.38705 * 120.05924 * 180.25191 * 16 15 14
18 18 C 1.38173 * 119.94203 * 180.25551 * 17 16 15
19 19 C 1.50701 * 119.96834 * 179.74471 * 18 17 16
20 20 O 1.42902 * 109.47202 * 300.02172 * 19 18 17
21 21 Si 1.86305 * 109.47023 * 180.02562 * 19 18 17
22 22 C 1.38232 * 120.05823 * 359.76822 * 18 17 16
23 23 C 1.38294 * 120.11124 * 359.97438 * 22 18 17
24 24 C 1.38122 * 120.05499 * 359.97438 * 23 22 18
25 25 C 1.53786 * 87.07962 * 334.56628 * 8 7 5
26 26 H 1.09002 * 109.46699 * 179.97438 * 1 2 3
27 27 H 1.08990 * 109.47169 * 299.99851 * 1 2 3
28 28 H 1.09000 * 109.47205 * 60.00602 * 1 2 3
29 29 H 1.09002 * 109.47496 * 240.00307 * 2 1 3
30 30 H 1.09007 * 109.46796 * 180.02562 * 3 2 1
31 31 H 1.09003 * 109.47569 * 299.99663 * 3 2 1
32 32 H 1.08999 * 109.47429 * 60.00098 * 3 2 1
33 33 H 1.08991 * 113.61707 * 25.44540 * 7 5 4
34 34 H 1.09001 * 113.61353 * 254.53432 * 7 5 4
35 35 H 0.96995 * 119.99943 * 72.48962 * 10 8 7
36 36 H 1.09003 * 109.47042 * 59.99726 * 13 11 10
37 37 H 1.09002 * 109.47306 * 300.00274 * 13 11 10
38 38 H 1.09000 * 109.47327 * 60.00364 * 14 13 11
39 39 H 1.08994 * 109.47082 * 299.99879 * 14 13 11
40 40 H 1.07997 * 120.03160 * 0.02562 * 17 16 15
41 41 H 1.08997 * 109.47279 * 60.02480 * 19 18 17
42 42 H 0.96699 * 113.99847 * 300.00081 * 20 19 18
43 43 H 1.48492 * 110.00137 * 179.97438 * 21 19 18
44 44 H 1.48495 * 109.99743 * 301.32062 * 21 19 18
45 45 H 1.08003 * 119.94745 * 179.97438 * 22 18 17
46 46 H 1.08000 * 119.97251 * 179.97438 * 23 22 18
47 47 H 1.08002 * 120.02504 * 180.02562 * 24 23 22
48 48 H 1.08993 * 113.61524 * 139.97981 * 25 8 7
49 49 H 1.09000 * 113.61775 * 270.88692 * 25 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 8 2.0064 -0.6736 1.1667
5 6 2.2001 -2.0781 0.9886
6 1 1.6628 -2.4736 0.1267
7 6 3.6747 -2.5106 1.0467
8 6 3.2011 -3.7406 1.8391
9 1 2.9371 -4.5914 1.2109
10 7 4.0903 -4.1042 2.9451
11 6 4.8663 -5.2022 2.8528
12 8 4.8281 -5.8896 1.8543
13 6 5.7814 -5.5761 3.9902
14 6 6.5440 -6.8534 3.6327
15 8 7.4113 -7.2081 4.7115
16 6 8.1665 -8.3270 4.5538
17 6 9.0265 -8.7327 5.5635
18 6 9.7971 -9.8677 5.3985
19 6 10.7360 -10.3058 6.4928
20 8 11.6910 -9.2727 6.7431
21 14 11.6232 -11.8570 5.9657
22 6 9.7078 -10.6013 4.2303
23 6 8.8472 -10.2018 3.2242
24 6 8.0740 -9.0686 3.3847
25 6 1.9910 -2.8967 2.2736
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8899
28 1 -0.3633 0.5137 -0.8900
29 1 1.8934 -0.5138 -0.8900
30 1 3.1300 1.4426 -0.0005
31 1 1.6766 1.9564 -0.8900
32 1 1.6765 1.9564 0.8900
33 1 4.3054 -1.8353 1.6247
34 1 4.0967 -2.7554 0.0720
35 1 4.1206 -3.5547 3.7438
36 1 5.1912 -5.7457 4.8907
37 1 6.4901 -4.7670 4.1674
38 1 7.1342 -6.6842 2.7321
39 1 5.8351 -7.6622 3.4559
40 1 9.0966 -8.1600 6.4764
41 1 10.1677 -10.5033 7.4017
42 1 12.2336 -9.0444 5.9760
43 1 12.5527 -12.2991 7.0361
44 1 10.6394 -12.9297 5.6716
45 1 10.3113 -11.4879 4.1030
46 1 8.7795 -10.7764 2.3123
47 1 7.4017 -8.7573 2.5989
48 1 1.0539 -3.4530 2.2892
49 1 2.1614 -2.3268 3.1869
There are 63 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 63
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_10905398_4549614.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Mar 6 2021 13:15:18
Heat of formation + Delta-G solvation = -103.417675 kcal
Electronic energy + Delta-G solvation = -27691.281561 eV
Core-core repulsion = 23586.164981 eV
Total energy + Delta-G solvation = -4105.116580 eV
No. of doubly occupied orbitals = 63
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 336.182 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-41.51578 -41.15552 -40.06679 -39.11976 -37.90649 -37.26363 -34.61380 -33.36666
-32.71897 -32.46026 -30.82100 -28.15711 -27.12978 -26.78281 -26.18553 -24.36936
-23.67821 -22.32242 -22.05119 -21.52412 -20.89925 -19.35707 -18.40345 -18.13044
-17.66720 -17.51141 -17.14129 -16.97405 -16.71565 -16.42855 -16.22658 -15.93573
-15.78490 -15.45406 -15.12420 -14.92184 -14.68268 -14.47047 -14.26225 -14.19319
-13.98885 -13.60523 -13.50460 -13.28660 -13.20516 -13.09575 -12.92955 -12.85595
-12.61941 -12.39118 -12.31603 -12.07976 -11.99725 -11.84182 -11.81697 -11.63524
-11.60176 -11.06127 -10.50650 -10.43720 -10.12194 -9.93715 -9.28699 -4.98028
0.18586 0.37748 1.30063 1.46431 1.64881 1.68127 1.96954 2.40336
2.65608 2.82757 3.41703 3.49795 3.50680 3.55320 3.65540 3.77167
3.82501 3.85805 3.88017 3.96230 3.99805 4.08418 4.11741 4.22239
4.26692 4.27282 4.33215 4.38629 4.49661 4.60030 4.65336 4.66483
4.71255 4.71950 4.74277 4.80946 4.87002 4.90176 4.95506 4.96670
4.97628 5.07459 5.24678 5.27588 5.29731 5.36713 5.42625 5.45636
5.69119 6.31143 6.33706 6.43328 6.75587 7.10773
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.074 3.926
3 C -0.150 4.150
4 O -0.382 6.382
5 C 0.063 3.937
6 H 0.099 0.901
7 C -0.166 4.166
8 C 0.122 3.878
9 H 0.106 0.894
10 N -0.704 5.704
11 C 0.522 3.478
12 O -0.582 6.582
13 C -0.134 4.134
14 C 0.075 3.925
15 O -0.325 6.325
16 C 0.117 3.883
17 C -0.142 4.142
18 C -0.084 4.084
19 C -0.078 4.078
20 O -0.555 6.555
21 Si 0.786 3.214
22 C -0.157 4.157
23 C -0.075 4.075
24 C -0.211 4.211
25 C -0.133 4.133
26 H 0.057 0.943
27 H 0.057 0.943
28 H 0.075 0.925
29 H 0.067 0.933
30 H 0.057 0.943
31 H 0.082 0.918
32 H 0.058 0.942
33 H 0.092 0.908
34 H 0.069 0.931
35 H 0.419 0.581
36 H 0.126 0.874
37 H 0.126 0.874
38 H 0.066 0.934
39 H 0.065 0.935
40 H 0.127 0.873
41 H 0.107 0.893
42 H 0.396 0.604
43 H -0.298 1.298
44 H -0.284 1.284
45 H 0.149 0.851
46 H 0.153 0.847
47 H 0.137 0.863
48 H 0.088 0.912
49 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.993 2.465 -2.733 3.812
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.016 3.984
3 C -0.208 4.208
4 O -0.301 6.301
5 C 0.005 3.995
6 H 0.117 0.883
7 C -0.205 4.205
8 C 0.017 3.983
9 H 0.124 0.876
10 N -0.355 5.355
11 C 0.310 3.690
12 O -0.463 6.463
13 C -0.173 4.173
14 C -0.001 4.001
15 O -0.239 6.239
16 C 0.071 3.929
17 C -0.160 4.160
18 C -0.085 4.085
19 C -0.188 4.188
20 O -0.363 6.363
21 Si 0.691 3.309
22 C -0.175 4.175
23 C -0.093 4.093
24 C -0.230 4.230
25 C -0.172 4.172
26 H 0.076 0.924
27 H 0.076 0.924
28 H 0.094 0.906
29 H 0.085 0.915
30 H 0.076 0.924
31 H 0.101 0.899
32 H 0.077 0.923
33 H 0.111 0.889
34 H 0.088 0.912
35 H 0.256 0.744
36 H 0.144 0.856
37 H 0.144 0.856
38 H 0.085 0.915
39 H 0.083 0.917
40 H 0.145 0.855
41 H 0.124 0.876
42 H 0.246 0.754
43 H -0.226 1.226
44 H -0.211 1.211
45 H 0.166 0.834
46 H 0.171 0.829
47 H 0.155 0.845
48 H 0.107 0.893
49 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -1.126 1.384 -2.343 2.945
hybrid contribution -0.779 0.469 0.275 0.950
sum -1.905 1.852 -2.068 3.367
Atomic orbital electron populations
1.22311 0.95414 1.02500 1.02909 1.22293 0.94075 0.94109 0.87888
1.21884 1.01559 0.94318 1.03008 1.87960 1.85986 1.19844 1.36352
1.23517 0.95739 0.81340 0.98942 0.88307 1.23984 0.97889 0.97322
1.01273 1.22156 0.90662 0.96151 0.89325 0.87636 1.45795 1.41639
1.27204 1.20903 1.20636 0.80325 0.80156 0.87922 1.90728 1.68462
1.53063 1.33997 1.21444 0.99070 0.98555 0.98255 1.22435 0.92031
0.97242 0.88382 1.85954 1.53534 1.40879 1.43529 1.19150 0.92202
0.86830 0.94679 1.20312 0.97895 0.98786 0.99051 1.20245 0.97269
0.94860 0.96093 1.25307 0.92635 1.01706 0.99121 1.86467 1.51128
1.57147 1.41584 0.93523 0.79936 0.72785 0.84618 1.21177 1.01585
1.01180 0.93538 1.21256 0.93555 0.94948 0.99499 1.21555 1.04719
0.98748 0.97980 1.23563 0.98220 0.96504 0.98862 0.92379 0.92415
0.90601 0.91493 0.92393 0.89938 0.92337 0.88932 0.91238 0.74365
0.85603 0.85611 0.91537 0.91687 0.85544 0.87594 0.75439 1.22637
1.21080 0.83432 0.82888 0.84549 0.89334 0.87960
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 0.37 9.53 71.98 0.69 1.05 16
2 C 0.07 -0.06 3.22 30.59 0.10 0.04 16
3 C -0.15 0.24 9.56 71.98 0.69 0.93 16
4 O -0.38 -0.69 10.00 -148.98 -1.49 -2.17 16
5 C 0.06 -0.11 4.13 31.12 0.13 0.02 16
6 H 0.10 -0.35 7.77 -2.39 -0.02 -0.37 16
7 C -0.17 0.20 7.71 31.12 0.24 0.44 16
8 C 0.12 -0.21 4.24 45.52 0.19 -0.02 16
9 H 0.11 0.16 7.46 -2.38 -0.02 0.14 16
10 N -0.70 2.36 5.35 -440.04 -2.36 0.00 16
11 C 0.52 0.59 7.83 87.66 0.69 1.27 16
12 O -0.58 -5.67 15.58 -3.03 -0.05 -5.71 16
13 C -0.13 0.45 6.07 29.85 0.18 0.63 16
14 C 0.07 0.13 4.03 71.98 0.29 0.42 16
15 O -0.32 -1.66 10.14 -92.47 -0.94 -2.60 16
16 C 0.12 0.67 6.69 22.51 0.15 0.82 16
17 C -0.14 -0.78 9.55 22.37 0.21 -0.56 16
18 C -0.08 -0.20 5.39 -19.88 -0.11 -0.31 16
19 C -0.08 -0.08 2.82 71.24 0.20 0.12 16
20 O -0.56 -0.96 12.77 -148.98 -1.90 -2.86 16
21 Si 0.79 -1.38 29.79 68.60 2.04 0.67 16
22 C -0.16 0.00 8.67 22.28 0.19 0.19 16
23 C -0.07 -0.03 10.04 22.26 0.22 0.19 16
24 C -0.21 -0.71 9.04 22.37 0.20 -0.51 16
25 C -0.13 0.52 7.66 31.12 0.24 0.76 16
26 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16
27 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16
28 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16
29 H 0.07 -0.16 7.73 -2.39 -0.02 -0.17 16
30 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16
31 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16
32 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16
33 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16
34 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16
35 H 0.42 -3.72 8.73 -92.71 -0.81 -4.53 16
36 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16
37 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16
38 H 0.07 0.19 7.62 -2.39 -0.02 0.17 16
39 H 0.06 0.19 7.62 -2.39 -0.02 0.18 16
40 H 0.13 0.77 8.06 -2.91 -0.02 0.75 16
41 H 0.11 0.25 7.96 -2.39 -0.02 0.23 16
42 H 0.40 -2.54 8.70 -74.06 -0.64 -3.19 16
43 H -0.30 -1.65 7.11 99.48 0.71 -0.94 16
44 H -0.28 -0.74 7.11 99.48 0.71 -0.04 16
45 H 0.15 -0.68 4.87 -2.91 -0.01 -0.70 16
46 H 0.15 -0.71 8.06 -2.91 -0.02 -0.73 16
47 H 0.14 0.25 6.30 -2.91 -0.02 0.23 16
48 H 0.09 -0.44 8.14 -2.39 -0.02 -0.45 16
49 H 0.10 -0.47 8.12 -2.39 -0.02 -0.49 16
Total: 0.00 -19.30 402.56 -0.64 -19.94
By element:
Atomic # 1 Polarization: -12.29 SS G_CDS: -0.46 Total: -12.75 kcal
Atomic # 6 Polarization: 0.98 SS G_CDS: 4.51 Total: 5.49 kcal
Atomic # 7 Polarization: 2.36 SS G_CDS: -2.36 Total: 0.00 kcal
Atomic # 8 Polarization: -8.97 SS G_CDS: -4.38 Total: -13.35 kcal
Atomic # 14 Polarization: -1.38 SS G_CDS: 2.04 Total: 0.67 kcal
Total: -19.30 -0.64 -19.94 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_10905398_4549614.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.476 kcal
(2) G-P(sol) polarization free energy of solvation -19.298 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.773 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.942 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.418 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds