Wall clock time and date at job start Sat Mar 6 2021 13:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47000 * 2 1 4 4 O 1.42896 * 109.47401 * 120.00047 * 2 1 3 5 5 C 1.42903 * 113.99870 * 90.00579 * 4 2 1 6 6 H 1.09007 * 112.90593 * 341.24603 * 5 4 2 7 7 C 1.53780 * 113.61920 * 112.50276 * 5 4 2 8 8 C 1.53778 * 87.08089 * 139.97977 * 7 5 4 9 9 H 1.09002 * 113.69341 * 89.12704 * 8 7 5 10 10 N 1.46506 * 113.61501 * 220.02008 * 8 7 5 11 11 C 1.34775 * 119.99625 * 252.50313 * 10 8 7 12 12 O 1.21277 * 120.00336 * 359.97438 * 11 10 8 13 13 C 1.50701 * 119.99353 * 179.97438 * 11 10 8 14 14 O 1.42908 * 109.46976 * 179.97438 * 13 11 10 15 15 C 1.35897 * 117.00437 * 179.97438 * 14 13 11 16 16 C 1.38709 * 120.05967 * 180.02562 * 15 14 13 17 17 N 1.48006 * 120.02511 * 359.97438 * 16 15 14 18 18 O 1.21797 * 119.99832 * 180.02562 * 17 16 15 19 19 O 1.21795 * 120.00007 * 359.97438 * 17 16 15 20 20 C 1.38166 * 119.94475 * 179.70377 * 16 15 14 21 21 C 1.38246 * 120.05479 * 0.54532 * 20 16 15 22 22 C 1.50699 * 119.94440 * 179.72556 * 21 20 16 23 23 O 1.42894 * 109.47188 * 64.72570 * 22 21 20 24 24 Si 1.86298 * 109.46950 * 184.73244 * 22 21 20 25 25 C 1.38293 * 120.10960 * 359.45885 * 21 20 16 26 26 C 1.38119 * 120.05440 * 0.26487 * 25 21 20 27 27 C 1.53777 * 87.08323 * 334.56666 * 8 7 5 28 28 H 1.09002 * 109.46966 * 299.99288 * 1 2 3 29 29 H 1.08993 * 109.47275 * 59.99965 * 1 2 3 30 30 H 1.09006 * 109.46586 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47352 * 240.00349 * 2 1 3 32 32 H 1.08999 * 109.47309 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47538 * 300.00224 * 3 2 1 34 34 H 1.09000 * 109.46783 * 60.00000 * 3 2 1 35 35 H 1.09002 * 113.61038 * 25.43161 * 7 5 4 36 36 H 1.08999 * 113.61081 * 254.52908 * 7 5 4 37 37 H 0.97003 * 119.99998 * 72.49486 * 10 8 7 38 38 H 1.09000 * 109.47448 * 59.99585 * 13 11 10 39 39 H 1.09001 * 109.47261 * 299.98947 * 13 11 10 40 40 H 1.08002 * 119.97059 * 180.29212 * 20 16 15 41 41 H 1.09006 * 109.46662 * 304.72839 * 22 21 20 42 42 H 0.96709 * 113.99337 * 60.00344 * 23 22 21 43 43 H 1.48506 * 109.99834 * 180.02562 * 24 22 21 44 44 H 1.48502 * 110.00011 * 301.31529 * 24 22 21 45 45 H 1.07999 * 119.97059 * 180.24815 * 25 21 20 46 46 H 1.08006 * 120.02635 * 179.97438 * 26 25 21 47 47 H 1.09006 * 113.61387 * 139.98016 * 27 8 7 48 48 H 1.08998 * 113.62065 * 270.88272 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2003 -2.0782 0.9885 6 1 1.6639 -2.4744 0.1262 7 6 3.6753 -2.5089 1.0478 8 6 3.2025 -3.7392 1.8400 9 1 2.9401 -4.5904 1.2118 10 7 4.0914 -4.1016 2.9468 11 6 4.8688 -5.1988 2.8551 12 8 4.8322 -5.8862 1.8566 13 6 5.7835 -5.5712 3.9934 14 8 6.4975 -6.7634 3.6601 15 6 7.3718 -7.2382 4.5858 16 6 8.0988 -8.3910 4.3279 17 7 7.9227 -9.1059 3.0440 18 8 8.5610 -10.1184 2.8183 19 8 7.1388 -8.6823 2.2137 20 6 8.9916 -8.8682 5.2683 21 6 9.1524 -8.2040 6.4700 22 6 10.1223 -8.7301 7.4964 23 8 11.4517 -8.6558 6.9776 24 14 10.0024 -7.7046 9.0471 25 6 8.4287 -7.0544 6.7296 26 6 7.5392 -6.5702 5.7905 27 6 1.9912 -2.8968 2.2734 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9565 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 4.3047 -1.8326 1.6261 36 1 4.0983 -2.7532 0.0733 37 1 4.1204 -3.5519 3.7455 38 1 5.1928 -5.7414 4.8935 39 1 6.4911 -4.7613 4.1708 40 1 9.5614 -9.7631 5.0659 41 1 9.8798 -9.7675 7.7272 42 1 11.7354 -7.7597 6.7498 43 1 10.9546 -8.2129 10.0671 44 1 10.2996 -6.2824 8.7398 45 1 8.5590 -6.5351 7.6675 46 1 6.9739 -5.6727 5.9938 47 1 1.0546 -3.4543 2.2884 48 1 2.1601 -2.3266 3.1868 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_4549638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:15:43 Heat of formation + Delta-G solvation = -89.896650 kcal Electronic energy + Delta-G solvation = -32618.201958 eV Core-core repulsion = 27838.192877 eV Total energy + Delta-G solvation = -4780.009081 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.160 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.29581 -41.81633 -41.16483 -40.14122 -39.33535 -37.87351 -37.62158 -37.43980 -34.64393 -33.47837 -32.92764 -32.26273 -29.91411 -28.14052 -27.81552 -26.76490 -26.64489 -25.26132 -23.94212 -22.83106 -22.28707 -21.73899 -21.03947 -20.53795 -19.77965 -19.19857 -18.64111 -18.45701 -18.28758 -18.19499 -17.58336 -17.19188 -16.78285 -16.43174 -16.36870 -16.09817 -15.88880 -15.65179 -15.60080 -15.25662 -14.87965 -14.77969 -14.26170 -14.03505 -13.89621 -13.67876 -13.59143 -13.47518 -13.25685 -13.22169 -13.07552 -12.70688 -12.63662 -12.39977 -12.35090 -12.29519 -12.27136 -12.21398 -12.07975 -11.81709 -11.78093 -11.58942 -11.00964 -10.84843 -10.72967 -10.42481 -10.14006 -9.81280 -4.90897 -1.31308 -0.24392 0.15726 0.35401 1.19969 1.26942 1.42719 1.59449 2.01200 2.05177 2.27609 2.78873 3.11438 3.24976 3.35788 3.42750 3.45719 3.51901 3.63536 3.71337 3.75909 3.78935 3.87423 3.92925 4.00618 4.02286 4.12978 4.28419 4.28573 4.35461 4.38998 4.55629 4.64082 4.67923 4.73220 4.73298 4.82196 4.84078 4.88129 4.91588 4.97538 4.98796 5.06441 5.07786 5.19185 5.28630 5.30841 5.44732 5.75689 6.34044 6.41786 6.44381 6.45398 7.13649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 C -0.150 4.150 4 O -0.379 6.379 5 C 0.062 3.938 6 H 0.095 0.905 7 C -0.166 4.166 8 C 0.124 3.876 9 H 0.099 0.901 10 N -0.696 5.696 11 C 0.509 3.491 12 O -0.566 6.566 13 C 0.025 3.975 14 O -0.292 6.292 15 C 0.194 3.806 16 C -0.105 4.105 17 N 0.034 4.966 18 O -0.203 6.203 19 O -0.174 6.174 20 C -0.003 4.003 21 C -0.147 4.147 22 C -0.091 4.091 23 O -0.551 6.551 24 Si 0.789 3.211 25 C -0.006 4.006 26 C -0.189 4.189 27 C -0.128 4.128 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.423 0.577 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.151 0.849 41 H 0.126 0.874 42 H 0.389 0.611 43 H -0.309 1.309 44 H -0.258 1.258 45 H 0.188 0.812 46 H 0.206 0.794 47 H 0.088 0.912 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 9.962 10.522 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.016 3.984 3 C -0.207 4.207 4 O -0.299 6.299 5 C 0.003 3.997 6 H 0.113 0.887 7 C -0.205 4.205 8 C 0.018 3.982 9 H 0.117 0.883 10 N -0.350 5.350 11 C 0.295 3.705 12 O -0.443 6.443 13 C -0.052 4.052 14 O -0.202 6.202 15 C 0.144 3.856 16 C -0.190 4.190 17 N 0.544 4.456 18 O -0.410 6.410 19 O -0.388 6.388 20 C -0.022 4.022 21 C -0.148 4.148 22 C -0.198 4.198 23 O -0.359 6.359 24 Si 0.692 3.308 25 C -0.024 4.024 26 C -0.207 4.207 27 C -0.166 4.166 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.262 0.738 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.168 0.832 41 H 0.144 0.856 42 H 0.239 0.761 43 H -0.238 1.238 44 H -0.184 1.184 45 H 0.204 0.796 46 H 0.223 0.777 47 H 0.107 0.893 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.604 9.688 10.978 15.079 hybrid contribution 0.933 -0.262 -1.718 1.973 sum -2.671 9.426 9.260 13.481 Atomic orbital electron populations 1.22310 0.95399 1.02482 1.02936 1.22284 0.94089 0.94135 0.87887 1.21877 1.01551 0.94253 1.03031 1.87949 1.85978 1.19731 1.36199 1.23507 0.95671 0.81413 0.99090 0.88692 1.24004 0.97994 0.97359 1.01187 1.22122 0.90760 0.96025 0.89258 0.88270 1.45558 1.41501 1.26784 1.21148 1.20562 0.80995 0.80848 0.88126 1.90844 1.67182 1.52572 1.33709 1.23133 0.96538 0.87386 0.98161 1.86471 1.51229 1.42280 1.40205 1.18974 0.87133 0.89594 0.89867 1.20866 1.11063 0.99313 0.87748 1.43903 0.98525 1.00058 1.03105 1.94501 1.46788 1.14995 1.84747 1.94678 1.31861 1.70094 1.42138 1.20861 0.91492 0.99142 0.90698 1.20363 1.01840 0.97482 0.95139 1.25511 0.80899 1.10384 1.03005 1.86640 1.29509 1.35034 1.84732 0.94110 0.88673 0.75521 0.72514 1.21759 0.89451 0.91774 0.99376 1.21805 1.04192 1.04046 0.90657 1.23547 0.97932 0.96238 0.98899 0.92220 0.90737 0.92436 0.91757 0.92383 0.90088 0.92149 0.88385 0.91794 0.73804 0.83485 0.83983 0.83169 0.85614 0.76140 1.23780 1.18392 0.79552 0.77725 0.89340 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.44 9.53 71.98 0.69 1.13 16 2 C 0.07 -0.10 3.22 30.59 0.10 0.00 16 3 C -0.15 0.34 9.56 71.98 0.69 1.03 16 4 O -0.38 -0.23 10.00 -148.98 -1.49 -1.72 16 5 C 0.06 -0.15 4.13 31.12 0.13 -0.02 16 6 H 0.10 -0.32 7.77 -2.38 -0.02 -0.33 16 7 C -0.17 0.31 7.71 31.12 0.24 0.55 16 8 C 0.12 -0.31 4.24 45.51 0.19 -0.11 16 9 H 0.10 0.25 7.46 -2.39 -0.02 0.24 16 10 N -0.70 4.18 5.35 -440.04 -2.36 1.82 16 11 C 0.51 0.45 7.91 87.66 0.69 1.14 16 12 O -0.57 -8.27 16.10 16.02 0.26 -8.01 16 13 C 0.02 -0.19 5.22 71.24 0.37 0.18 16 14 O -0.29 -1.23 7.68 -63.36 -0.49 -1.71 16 15 C 0.19 0.05 6.67 22.51 0.15 0.20 16 16 C -0.10 -0.71 6.87 36.47 0.25 -0.46 16 17 N 0.03 0.57 4.45 -46.24 -0.21 0.37 16 18 O -0.20 -3.79 18.45 18.89 0.35 -3.44 16 19 O -0.17 -3.77 17.24 25.62 0.44 -3.33 16 20 C 0.00 0.00 9.18 22.25 0.20 0.20 16 21 C -0.15 0.88 5.35 -19.85 -0.11 0.77 16 22 C -0.09 0.59 2.80 71.24 0.20 0.79 16 23 O -0.55 0.87 12.83 -148.98 -1.91 -1.04 16 24 Si 0.79 -8.08 29.88 68.60 2.05 -6.03 16 25 C -0.01 0.07 8.66 22.25 0.19 0.27 16 26 C -0.19 2.09 9.04 22.36 0.20 2.30 16 27 C -0.13 0.72 7.66 31.12 0.24 0.96 16 28 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 31 H 0.06 -0.14 7.72 -2.39 -0.02 -0.16 16 32 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.08 -0.37 8.14 -2.38 -0.02 -0.39 16 34 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.42 -6.06 8.73 -92.71 -0.81 -6.87 16 38 H 0.15 -2.47 7.66 -2.39 -0.02 -2.48 16 39 H 0.14 -2.28 7.66 -2.39 -0.02 -2.30 16 40 H 0.15 0.52 7.61 -2.91 -0.02 0.50 16 41 H 0.13 -0.86 7.96 -2.38 -0.02 -0.88 16 42 H 0.39 -3.15 8.70 -74.05 -0.64 -3.79 16 43 H -0.31 0.03 7.11 99.48 0.71 0.74 16 44 H -0.26 2.47 7.01 99.48 0.70 3.17 16 45 H 0.19 -3.58 4.84 -2.91 -0.01 -3.59 16 46 H 0.21 -4.33 6.30 -2.91 -0.02 -4.35 16 47 H 0.09 -0.56 8.14 -2.38 -0.02 -0.58 16 48 H 0.11 -0.86 8.12 -2.39 -0.02 -0.88 16 Total: 0.00 -37.85 407.66 0.67 -37.19 By element: Atomic # 1 Polarization: -22.60 SS G_CDS: -0.41 Total: -23.01 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 4.43 Total: 8.92 kcal Atomic # 7 Polarization: 4.75 SS G_CDS: -2.56 Total: 2.19 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -2.84 Total: -19.25 kcal Atomic # 14 Polarization: -8.08 SS G_CDS: 2.05 Total: -6.03 kcal Total: -37.85 0.67 -37.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_4549638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.711 kcal (2) G-P(sol) polarization free energy of solvation -37.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds