Wall clock time and date at job start Sat Mar 6 2021 13:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47304 * 2 1 4 4 O 1.42899 * 109.46778 * 119.99707 * 2 1 3 5 5 C 1.42902 * 113.99903 * 90.00295 * 4 2 1 6 6 H 1.08993 * 112.90736 * 341.24804 * 5 4 2 7 7 C 1.53962 * 113.66723 * 112.55150 * 5 4 2 8 8 C 1.53782 * 87.11063 * 139.88843 * 7 5 4 9 9 H 1.08996 * 113.68722 * 89.19879 * 8 7 5 10 10 N 1.46499 * 113.61191 * 220.09091 * 8 7 5 11 11 C 1.34783 * 119.99531 * 252.49880 * 10 8 7 12 12 O 1.21278 * 120.00062 * 359.97438 * 11 10 8 13 13 C 1.50703 * 119.99755 * 180.02562 * 11 10 8 14 14 O 1.42895 * 109.47034 * 179.97438 * 13 11 10 15 15 C 1.35901 * 116.99884 * 180.02562 * 14 13 11 16 16 C 1.38723 * 120.05368 * 179.72527 * 15 14 13 17 17 C 1.38170 * 119.93857 * 179.72087 * 16 15 14 18 18 C 1.50703 * 119.96787 * 180.27508 * 17 16 15 19 19 O 1.42898 * 109.46834 * 65.29629 * 18 17 16 20 20 Si 1.86292 * 109.46960 * 185.29951 * 18 17 16 21 21 C 1.38235 * 120.05790 * 0.57824 * 17 16 15 22 22 C 1.38289 * 120.11306 * 359.67499 * 21 17 16 23 23 C 1.38124 * 120.05538 * 0.04514 * 22 21 17 24 24 C 1.53781 * 87.08260 * 334.63747 * 8 7 5 25 25 H 1.09005 * 109.46688 * 60.00339 * 1 2 3 26 26 H 1.09000 * 109.47291 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47675 * 300.00297 * 1 2 3 28 28 H 1.08994 * 109.47675 * 239.99703 * 2 1 3 29 29 H 1.08994 * 109.47266 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.47046 * 299.99671 * 3 2 1 31 31 H 1.09004 * 109.46961 * 59.99389 * 3 2 1 32 32 H 1.08997 * 113.53543 * 25.33518 * 7 5 4 33 33 H 1.08998 * 113.73879 * 254.47115 * 7 5 4 34 34 H 0.96997 * 120.00777 * 72.49903 * 10 8 7 35 35 H 1.08994 * 109.47288 * 300.00303 * 13 11 10 36 36 H 1.09007 * 109.46858 * 60.00059 * 13 11 10 37 37 H 1.07993 * 120.02368 * 359.97438 * 16 15 14 38 38 H 1.09000 * 109.46829 * 305.29960 * 18 17 16 39 39 H 0.96699 * 113.99848 * 179.97438 * 19 18 17 40 40 H 1.48501 * 110.00005 * 300.00078 * 20 18 17 41 41 H 1.48502 * 110.00239 * 61.31977 * 20 18 17 42 42 H 1.08004 * 119.94501 * 179.70497 * 21 17 16 43 43 H 1.08000 * 119.97388 * 180.02562 * 22 21 17 44 44 H 1.07998 * 120.02968 * 179.97438 * 23 22 21 45 45 H 1.09002 * 113.61445 * 139.98212 * 24 8 7 46 46 H 1.09002 * 113.61408 * 270.79943 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9887 6 1 1.6638 -2.4744 0.1265 7 6 3.6763 -2.5110 1.0492 8 6 3.2026 -3.7399 1.8431 9 1 2.9409 -4.5921 1.2160 10 7 4.0903 -4.1003 2.9514 11 6 4.8678 -5.1977 2.8625 12 8 4.8322 -5.8869 1.8652 13 6 5.7806 -5.5688 4.0028 14 8 6.4949 -6.7614 3.6723 15 6 7.3668 -7.2357 4.6006 16 6 8.0895 -8.3925 4.3480 17 6 8.9796 -8.8693 5.2911 18 6 9.7696 -10.1226 5.0147 19 8 10.6622 -9.8918 3.9229 20 14 10.7488 -10.5861 6.5302 21 6 9.1414 -8.2013 6.4905 22 6 8.4183 -7.0508 6.7469 23 6 7.5315 -6.5668 5.8050 24 6 1.9908 -2.8967 2.2737 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 4.3051 -1.8336 1.6270 33 1 4.1016 -2.7570 0.0763 34 1 4.1186 -3.5493 3.7492 35 1 6.4877 -4.7587 4.1806 36 1 5.1882 -5.7379 4.9021 37 1 7.9595 -8.9175 3.4133 38 1 9.0871 -10.9337 4.7609 39 1 11.2043 -10.6578 3.6895 40 1 11.6831 -9.4883 6.8867 41 1 9.8302 -10.8597 7.6645 42 1 9.8341 -8.5783 7.2283 43 1 8.5468 -6.5305 7.6845 44 1 6.9666 -5.6685 6.0059 45 1 1.0542 -3.4541 2.2887 46 1 2.1584 -2.3260 3.1871 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:15:56 Heat of formation + Delta-G solvation = -93.421212 kcal Electronic energy + Delta-G solvation = -26124.628337 eV Core-core repulsion = 22175.482855 eV Total energy + Delta-G solvation = -3949.145481 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.73072 -41.10509 -40.05128 -38.95710 -37.87420 -37.30174 -34.68939 -32.98350 -32.70407 -31.77585 -29.45949 -28.15726 -26.87903 -26.79572 -25.16853 -23.83257 -22.64631 -22.22770 -21.65551 -20.99579 -19.26872 -18.46238 -18.40321 -18.20774 -17.60616 -17.51791 -17.10857 -16.74639 -16.34878 -15.91699 -15.88646 -15.64857 -15.35774 -15.10034 -14.75882 -14.64017 -14.36348 -14.26759 -13.86084 -13.74573 -13.61797 -13.51459 -13.29326 -13.25140 -13.09357 -12.66181 -12.46022 -12.33720 -12.29027 -12.17362 -12.11390 -11.86540 -11.84122 -11.61192 -11.06710 -10.45472 -10.40033 -10.20311 -10.02231 -9.44078 -4.93365 0.05662 0.21414 1.24387 1.33795 1.41008 1.65392 1.95849 2.42825 2.49664 2.79291 3.35891 3.38867 3.47586 3.49242 3.70548 3.74969 3.79189 3.83835 3.84960 3.94680 3.98494 4.01198 4.10756 4.13934 4.17690 4.26606 4.31539 4.37746 4.55139 4.63474 4.69199 4.71472 4.79033 4.83530 4.85639 4.89271 4.94424 4.95310 5.02108 5.06620 5.17766 5.26865 5.28248 5.29106 5.38769 5.52045 6.15350 6.31774 6.38534 6.87103 7.03339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 C -0.150 4.150 4 O -0.380 6.380 5 C 0.064 3.936 6 H 0.099 0.901 7 C -0.167 4.167 8 C 0.122 3.878 9 H 0.103 0.897 10 N -0.697 5.697 11 C 0.515 3.485 12 O -0.571 6.571 13 C 0.035 3.965 14 O -0.318 6.318 15 C 0.120 3.880 16 C -0.144 4.144 17 C -0.052 4.052 18 C -0.091 4.091 19 O -0.566 6.566 20 Si 0.788 3.212 21 C -0.180 4.180 22 C -0.072 4.072 23 C -0.202 4.202 24 C -0.130 4.130 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.422 0.578 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.090 0.910 39 H 0.404 0.596 40 H -0.292 1.292 41 H -0.285 1.285 42 H 0.123 0.877 43 H 0.159 0.841 44 H 0.167 0.833 45 H 0.090 0.910 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.109 1.582 3.519 4.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.016 3.984 3 C -0.207 4.207 4 O -0.300 6.300 5 C 0.005 3.995 6 H 0.117 0.883 7 C -0.206 4.206 8 C 0.017 3.983 9 H 0.121 0.879 10 N -0.350 5.350 11 C 0.301 3.699 12 O -0.450 6.450 13 C -0.042 4.042 14 O -0.231 6.231 15 C 0.075 3.925 16 C -0.163 4.163 17 C -0.052 4.052 18 C -0.199 4.199 19 O -0.376 6.376 20 Si 0.693 3.307 21 C -0.198 4.198 22 C -0.089 4.089 23 C -0.220 4.220 24 C -0.168 4.168 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.260 0.740 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.108 0.892 39 H 0.255 0.745 40 H -0.220 1.220 41 H -0.212 1.212 42 H 0.140 0.860 43 H 0.177 0.823 44 H 0.184 0.816 45 H 0.108 0.892 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.238 1.891 3.618 4.266 hybrid contribution -0.496 0.516 -0.274 0.767 sum -1.735 2.408 3.344 4.470 Atomic orbital electron populations 1.22309 0.95352 1.02512 1.02940 1.22298 0.94123 0.94124 0.87873 1.21880 1.01539 0.94283 1.03039 1.87956 1.85980 1.19738 1.36302 1.23520 0.95538 0.81406 0.98994 0.88346 1.24036 0.98078 0.97238 1.01228 1.22174 0.90753 0.96221 0.89128 0.87920 1.45608 1.41518 1.26691 1.21222 1.20532 0.80698 0.80727 0.87919 1.90758 1.67587 1.52759 1.33859 1.22770 0.95981 0.88076 0.97391 1.86126 1.53188 1.42065 1.41701 1.19183 0.90489 0.93888 0.88961 1.20353 0.98526 0.96582 1.00841 1.19492 0.95651 0.96355 0.93731 1.25048 0.96901 0.96225 1.01761 1.86453 1.55834 1.43439 1.51829 0.94222 0.79326 0.84395 0.72775 1.21051 1.03020 0.98355 0.97376 1.21252 0.93468 0.94397 0.99827 1.21617 1.03761 1.03307 0.93300 1.23553 0.97959 0.96328 0.98960 0.90634 0.92382 0.92317 0.91585 0.92423 0.89964 0.92247 0.88668 0.91453 0.74002 0.85784 0.85419 0.85759 0.89203 0.74502 1.22010 1.21202 0.86009 0.82334 0.81589 0.89179 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.35 9.53 71.98 0.69 1.03 16 2 C 0.07 -0.05 3.22 30.59 0.10 0.05 16 3 C -0.15 0.22 9.56 71.98 0.69 0.91 16 4 O -0.38 -0.67 10.00 -148.98 -1.49 -2.16 16 5 C 0.06 -0.09 4.14 31.18 0.13 0.04 16 6 H 0.10 -0.29 7.77 -2.39 -0.02 -0.31 16 7 C -0.17 0.08 7.72 31.18 0.24 0.32 16 8 C 0.12 -0.10 4.24 45.52 0.19 0.10 16 9 H 0.10 0.34 7.46 -2.39 -0.02 0.32 16 10 N -0.70 1.89 5.35 -440.03 -2.36 -0.47 16 11 C 0.51 2.20 7.91 87.66 0.69 2.89 16 12 O -0.57 -9.02 16.10 16.01 0.26 -8.76 16 13 C 0.04 -0.04 5.22 71.24 0.37 0.33 16 14 O -0.32 -2.80 9.67 -73.40 -0.71 -3.51 16 15 C 0.12 0.89 6.69 22.51 0.15 1.04 16 16 C -0.14 -1.42 9.63 22.37 0.22 -1.21 16 17 C -0.05 -0.40 5.38 -19.88 -0.11 -0.51 16 18 C -0.09 -0.21 2.79 71.24 0.20 -0.01 16 19 O -0.57 -1.73 12.81 -148.98 -1.91 -3.64 16 20 Si 0.79 -0.91 29.85 68.60 2.05 1.14 16 21 C -0.18 -1.07 8.67 22.28 0.19 -0.87 16 22 C -0.07 -0.14 10.04 22.25 0.22 0.09 16 23 C -0.20 -0.27 9.04 22.36 0.20 -0.06 16 24 C -0.13 0.52 7.66 31.12 0.24 0.76 16 25 H 0.07 -0.29 8.14 -2.38 -0.02 -0.31 16 26 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 27 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.07 -0.12 7.72 -2.39 -0.02 -0.14 16 29 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 32 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.42 -4.20 8.73 -92.71 -0.81 -5.01 16 35 H 0.12 -0.89 7.66 -2.39 -0.02 -0.91 16 36 H 0.13 -1.01 7.66 -2.38 -0.02 -1.03 16 37 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.09 -0.09 7.96 -2.39 -0.02 -0.11 16 39 H 0.40 -3.25 8.74 -74.06 -0.65 -3.90 16 40 H -0.29 -1.65 7.05 99.48 0.70 -0.94 16 41 H -0.28 -1.04 7.11 99.48 0.71 -0.33 16 42 H 0.12 0.56 4.86 -2.91 -0.01 0.55 16 43 H 0.16 -0.68 8.06 -2.91 -0.02 -0.70 16 44 H 0.17 -1.10 6.30 -2.91 -0.02 -1.12 16 45 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H 0.11 -0.58 8.12 -2.39 -0.02 -0.60 16 Total: 0.00 -26.66 381.74 -0.18 -26.84 By element: Atomic # 1 Polarization: -13.89 SS G_CDS: -0.43 Total: -14.32 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 4.42 Total: 4.88 kcal Atomic # 7 Polarization: 1.89 SS G_CDS: -2.36 Total: -0.47 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -3.85 Total: -18.07 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: 2.05 Total: 1.14 kcal Total: -26.66 -0.18 -26.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.583 kcal (2) G-P(sol) polarization free energy of solvation -26.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds