Wall clock time and date at job start Sat Mar 6 2021 13:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35988 * 117.00225 * 2 1 4 4 C 1.39153 * 120.08009 * 179.97438 * 3 2 1 5 5 O 1.35997 * 120.06536 * 359.97438 * 4 3 2 6 6 C 1.42908 * 116.99676 * 179.72104 * 5 4 3 7 7 C 1.50698 * 109.46887 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 H 1.09002 * 112.85201 * 24.08188 * 10 9 7 12 12 C 1.53784 * 113.61491 * 155.28109 * 10 9 7 13 13 C 1.53783 * 87.08338 * 139.98310 * 12 10 9 14 14 H 1.08994 * 113.61765 * 89.19652 * 13 12 10 15 15 O 1.42905 * 113.61010 * 220.02199 * 13 12 10 16 16 C 1.42904 * 113.99504 * 209.99644 * 15 13 12 17 17 C 1.53000 * 109.46636 * 149.99919 * 16 15 13 18 18 C 1.52992 * 109.47148 * 269.99906 * 16 15 13 19 19 C 1.53780 * 87.07825 * 334.56565 * 13 12 10 20 20 C 1.38563 * 119.86003 * 179.72383 * 4 3 2 21 21 C 1.38244 * 119.99423 * 0.27334 * 20 4 3 22 22 C 1.38250 * 120.15285 * 0.02562 * 21 20 4 23 23 C 1.50700 * 119.92990 * 179.97438 * 22 21 20 24 24 O 1.42898 * 109.47157 * 244.99785 * 23 22 21 25 25 Si 1.86296 * 109.47105 * 5.00232 * 23 22 21 26 26 C 1.38249 * 120.14199 * 359.97438 * 22 21 20 27 27 H 1.09002 * 109.46984 * 60.00574 * 1 2 3 28 28 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47402 * 300.00249 * 1 2 3 30 30 H 1.09003 * 109.46467 * 60.00362 * 6 5 4 31 31 H 1.08993 * 109.47113 * 300.00627 * 6 5 4 32 32 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 33 33 H 1.09000 * 113.61044 * 254.52540 * 12 10 9 34 34 H 1.08999 * 113.61555 * 25.34324 * 12 10 9 35 35 H 1.09000 * 109.47076 * 30.00223 * 16 15 13 36 36 H 1.08995 * 109.47279 * 59.99895 * 17 16 15 37 37 H 1.09006 * 109.46674 * 180.02562 * 17 16 15 38 38 H 1.09002 * 109.47061 * 299.99343 * 17 16 15 39 39 H 1.08997 * 109.47479 * 180.02562 * 18 16 15 40 40 H 1.09008 * 109.47099 * 300.00051 * 18 16 15 41 41 H 1.08999 * 109.47354 * 60.00217 * 18 16 15 42 42 H 1.08998 * 113.61772 * 270.88604 * 19 13 12 43 43 H 1.09001 * 113.61751 * 139.98662 * 19 13 12 44 44 H 1.08001 * 120.00293 * 180.25762 * 20 4 3 45 45 H 1.08001 * 119.92494 * 179.97438 * 21 20 4 46 46 H 1.08999 * 109.46708 * 125.00163 * 23 22 21 47 47 H 0.96697 * 113.99683 * 179.97438 * 24 23 22 48 48 H 1.48500 * 110.00180 * 178.67647 * 25 23 22 49 49 H 1.48504 * 110.00035 * 299.99822 * 25 23 22 50 50 H 1.07997 * 119.99594 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4359 1.2864 0.0005 5 8 4.1795 0.1476 0.0016 6 6 5.6003 0.3006 -0.0041 7 6 6.2518 -1.0582 -0.0014 8 8 5.5670 -2.0592 0.0044 9 7 7.5957 -1.1612 -0.0053 10 6 8.2291 -2.4821 0.0034 11 1 7.5837 -3.2637 -0.3976 12 6 9.6474 -2.4891 -0.5908 13 6 10.0316 -3.4579 0.5400 14 1 9.8808 -4.5071 0.2862 15 8 11.3215 -3.2021 1.0994 16 6 11.9776 -4.3670 1.6039 17 6 13.4925 -4.1942 1.4771 18 6 11.6081 -4.5634 3.0755 19 6 8.8765 -2.8460 1.3501 20 6 4.0603 2.5233 -0.0053 21 6 3.3028 3.6798 -0.0058 22 6 1.9223 3.6058 -0.0001 23 6 1.1016 4.8696 -0.0002 24 8 0.3695 4.9623 1.2235 25 14 2.2302 6.3430 -0.1618 26 6 1.2932 2.3747 0.0057 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 5.9097 0.8533 0.8830 31 1 5.9033 0.8475 -0.8969 32 1 8.1435 -0.3607 -0.0095 33 1 9.7023 -2.9341 -1.5843 34 1 10.1508 -1.5242 -0.5308 35 1 11.6621 -5.2387 1.0306 36 1 13.8080 -3.3225 2.0503 37 1 13.9930 -5.0830 1.8615 38 1 13.7557 -4.0543 0.4286 39 1 12.1089 -5.4517 3.4605 40 1 11.9237 -3.6916 3.6488 41 1 10.5289 -4.6865 3.1659 42 1 9.1696 -1.9790 1.9420 43 1 8.3090 -3.5790 1.9235 44 1 5.1386 2.5840 -0.0091 45 1 3.7907 4.6433 -0.0099 46 1 0.4060 4.8510 -0.8392 47 1 -0.1820 5.7535 1.2929 48 1 1.4307 7.5940 -0.1953 49 1 3.1836 6.3797 0.9762 50 1 0.2146 2.3197 0.0097 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:16:08 Heat of formation + Delta-G solvation = -125.829015 kcal Electronic energy + Delta-G solvation = -30590.930935 eV Core-core repulsion = 26166.160335 eV Total energy + Delta-G solvation = -4424.770600 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.181 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.83638 -41.25070 -40.17538 -39.25760 -38.81217 -37.82839 -37.11953 -34.62601 -32.96449 -32.12861 -31.46953 -29.62843 -28.46342 -28.14854 -26.72517 -26.23188 -25.15128 -23.49754 -22.48337 -22.30776 -21.66099 -21.00554 -19.75101 -18.62751 -18.42230 -18.26554 -18.09163 -17.51851 -17.47092 -16.76598 -16.65124 -16.47793 -16.10653 -15.89887 -15.84205 -15.69006 -15.40807 -15.23477 -15.12261 -14.45180 -14.08712 -14.01707 -13.91958 -13.73594 -13.52688 -13.48423 -13.46258 -13.37095 -13.09590 -12.79683 -12.64444 -12.58417 -12.24515 -12.22534 -12.17115 -11.99422 -11.93393 -11.88948 -11.68742 -11.60099 -10.98358 -10.49474 -10.44271 -10.14143 -9.78720 -8.92181 -4.89580 0.16008 0.26734 1.31733 1.42009 1.46724 1.63557 1.97151 2.30262 2.48867 2.52165 2.83037 3.37787 3.41671 3.52634 3.56551 3.70942 3.80042 3.86555 3.89183 3.91020 3.98350 4.04587 4.11551 4.15053 4.17060 4.26196 4.27078 4.30753 4.33401 4.35388 4.47862 4.62380 4.65666 4.67089 4.72165 4.73126 4.81685 4.88440 4.92400 4.94493 4.98916 5.00000 5.06529 5.10326 5.27938 5.31195 5.38277 5.44118 5.57748 5.95990 6.34759 6.40727 6.53020 6.59252 7.11653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.078 3.922 4 C 0.084 3.916 5 O -0.313 6.313 6 C 0.034 3.966 7 C 0.514 3.486 8 O -0.572 6.572 9 N -0.697 5.697 10 C 0.122 3.878 11 H 0.101 0.899 12 C -0.129 4.129 13 C 0.064 3.936 14 H 0.099 0.901 15 O -0.380 6.380 16 C 0.074 3.926 17 C -0.150 4.150 18 C -0.174 4.174 19 C -0.166 4.166 20 C -0.159 4.159 21 C -0.113 4.113 22 C -0.081 4.081 23 C -0.088 4.088 24 O -0.560 6.560 25 Si 0.773 3.227 26 C -0.152 4.152 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.422 0.578 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.177 0.823 45 H 0.155 0.845 46 H 0.093 0.907 47 H 0.395 0.605 48 H -0.288 1.288 49 H -0.292 1.292 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 4.448 -3.412 7.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.032 3.968 4 C 0.039 3.961 5 O -0.227 6.227 6 C -0.044 4.044 7 C 0.300 3.700 8 O -0.451 6.451 9 N -0.351 5.351 10 C 0.017 3.983 11 H 0.119 0.881 12 C -0.167 4.167 13 C 0.005 3.995 14 H 0.117 0.883 15 O -0.299 6.299 16 C 0.017 3.983 17 C -0.207 4.207 18 C -0.231 4.231 19 C -0.205 4.205 20 C -0.178 4.178 21 C -0.131 4.131 22 C -0.081 4.081 23 C -0.196 4.196 24 O -0.370 6.370 25 Si 0.678 3.322 26 C -0.171 4.171 27 H 0.087 0.913 28 H 0.130 0.870 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.260 0.740 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.194 0.806 45 H 0.172 0.828 46 H 0.111 0.889 47 H 0.245 0.755 48 H -0.216 1.216 49 H -0.219 1.219 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.475 3.693 -2.943 6.506 hybrid contribution -1.384 0.219 1.036 1.743 sum 3.090 3.913 -1.906 5.338 Atomic orbital electron populations 1.23296 0.76788 1.05261 1.02101 1.86186 1.23050 1.26492 1.89087 1.18631 0.89883 0.85604 1.02658 1.18568 0.88238 0.86491 1.02803 1.86221 1.18191 1.28938 1.89310 1.22789 0.79369 0.95180 1.07072 1.20593 0.83063 0.90855 0.75454 1.90765 1.64100 1.40147 1.50051 1.45598 1.05114 1.09896 1.74466 1.22169 0.93098 0.85685 0.97356 0.88088 1.23557 0.92842 1.01634 0.98696 1.23549 0.82407 0.99236 0.94266 0.88343 1.87950 1.30608 1.33224 1.78109 1.22337 0.93761 0.87880 0.94370 1.21886 0.93173 1.02984 1.02686 1.22315 1.01737 1.02575 0.96517 1.24006 0.96976 1.02029 0.97517 1.21351 1.02240 0.89266 1.04900 1.20994 0.92438 0.99101 1.00561 1.19258 0.93835 0.93404 1.01644 1.25083 1.01282 1.04008 0.89218 1.86553 1.63201 1.48728 1.38530 0.94044 0.78733 0.72482 0.86978 1.21031 1.00601 0.90506 1.04955 0.91334 0.86988 0.92155 0.85833 0.85062 0.73964 0.89107 0.87432 0.91230 0.92403 0.90022 0.92038 0.90662 0.92507 0.92853 0.88712 0.91704 0.80614 0.82812 0.88869 0.75494 1.21580 1.21943 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.18 16 2 O -0.33 -4.11 10.28 -79.55 -0.82 -4.93 16 3 C 0.08 0.76 6.70 22.57 0.15 0.92 16 4 C 0.08 0.63 6.70 22.57 0.15 0.78 16 5 O -0.31 -3.14 9.46 -67.10 -0.63 -3.77 16 6 C 0.03 -0.03 5.22 71.24 0.37 0.34 16 7 C 0.51 2.48 7.91 87.66 0.69 3.18 16 8 O -0.57 -9.70 16.10 16.00 0.26 -9.44 16 9 N -0.70 1.74 5.35 -440.03 -2.36 -0.61 16 10 C 0.12 -0.06 4.24 45.52 0.19 0.13 16 11 H 0.10 0.39 7.47 -2.39 -0.02 0.37 16 12 C -0.13 0.52 7.66 31.12 0.24 0.76 16 13 C 0.06 -0.09 4.27 31.12 0.13 0.05 16 14 H 0.10 -0.29 7.45 -2.39 -0.02 -0.31 16 15 O -0.38 -0.67 10.00 -148.98 -1.49 -2.16 16 16 C 0.07 -0.05 3.33 30.59 0.10 0.06 16 17 C -0.15 0.28 9.56 71.98 0.69 0.97 16 18 C -0.17 0.14 9.53 71.98 0.69 0.83 16 19 C -0.17 0.02 7.71 31.12 0.24 0.26 16 20 C -0.16 0.02 9.04 22.35 0.20 0.22 16 21 C -0.11 0.00 8.66 22.27 0.19 0.20 16 22 C -0.08 -0.24 5.38 -19.86 -0.11 -0.35 16 23 C -0.09 0.07 2.79 71.24 0.20 0.27 16 24 O -0.56 -1.26 12.81 -148.98 -1.91 -3.17 16 25 Si 0.77 -2.69 29.84 68.60 2.05 -0.65 16 26 C -0.15 -0.89 8.67 22.35 0.19 -0.70 16 27 H 0.07 0.00 7.68 -2.39 -0.02 -0.02 16 28 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 29 H 0.06 0.10 7.65 -2.39 -0.02 0.08 16 30 H 0.12 -0.91 7.66 -2.39 -0.02 -0.92 16 31 H 0.13 -1.13 7.66 -2.39 -0.02 -1.15 16 32 H 0.42 -4.24 8.73 -92.71 -0.81 -5.05 16 33 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 34 H 0.11 -0.62 8.12 -2.39 -0.02 -0.64 16 35 H 0.07 -0.18 7.42 -2.39 -0.02 -0.19 16 36 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.08 -0.35 8.14 -2.38 -0.02 -0.37 16 38 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 41 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.09 -0.01 8.14 -2.39 -0.02 -0.02 16 43 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.18 -1.52 6.30 -2.91 -0.02 -1.53 16 45 H 0.15 -0.78 4.85 -2.91 -0.01 -0.80 16 46 H 0.09 -0.43 7.96 -2.39 -0.02 -0.44 16 47 H 0.39 -2.34 8.74 -74.06 -0.65 -2.99 16 48 H -0.29 -0.27 7.11 99.48 0.71 0.44 16 49 H -0.29 -0.82 7.05 99.48 0.70 -0.12 16 50 H 0.14 0.49 6.30 -2.91 -0.02 0.47 16 Total: 0.00 -29.68 410.60 0.08 -29.60 By element: Atomic # 1 Polarization: -13.51 SS G_CDS: -0.46 Total: -13.96 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.44 Total: 9.08 kcal Atomic # 7 Polarization: 1.74 SS G_CDS: -2.36 Total: -0.61 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -4.59 Total: -23.46 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.05 Total: -0.65 kcal Total: -29.68 0.08 -29.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.226 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds