Wall clock time and date at job start Sat Mar 6 2021 13:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33812 * 122.44865 * 2 1 4 4 C 1.50700 * 124.52360 * 0.02562 * 3 2 1 5 5 O 1.42903 * 109.46907 * 30.00301 * 4 3 2 6 6 Si 1.86303 * 109.47172 * 150.00202 * 4 3 2 7 7 S 1.70624 * 110.95362 * 179.77866 * 3 2 1 8 8 C 1.75827 * 91.56125 * 0.30526 * 7 3 2 9 9 C 1.46584 * 125.45635 * 179.97438 * 8 7 3 10 10 O 1.21701 * 120.00004 * 179.69298 * 9 8 7 11 11 N 1.34778 * 119.99949 * 359.69529 * 9 8 7 12 12 C 1.46500 * 119.99919 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.85132 * 25.33083 * 12 11 9 14 14 C 1.53781 * 113.61711 * 156.52821 * 12 11 9 15 15 C 1.53777 * 87.08336 * 140.06028 * 14 12 11 16 16 H 1.09003 * 113.60961 * 89.20081 * 15 14 12 17 17 O 1.42904 * 113.61633 * 220.01738 * 15 14 12 18 18 C 1.42892 * 113.99889 * 210.00190 * 17 15 14 19 19 C 1.52997 * 109.47144 * 90.00290 * 18 17 15 20 20 C 1.53004 * 109.47169 * 209.99987 * 18 17 15 21 21 C 1.53775 * 87.07992 * 334.56762 * 15 14 12 22 22 C 1.36648 * 109.08674 * 359.69655 * 8 7 3 23 23 H 1.08996 * 109.47985 * 270.00387 * 1 2 3 24 24 H 1.08998 * 109.47245 * 30.00857 * 1 2 3 25 25 H 1.09006 * 109.47064 * 150.00042 * 1 2 3 26 26 H 1.08996 * 109.47003 * 269.99899 * 4 3 2 27 27 H 0.96696 * 114.00073 * 60.00672 * 5 4 3 28 28 H 1.48501 * 110.00133 * 58.67936 * 6 4 3 29 29 H 1.48497 * 110.00047 * 179.97438 * 6 4 3 30 30 H 0.96998 * 120.00229 * 359.97438 * 11 9 8 31 31 H 1.08997 * 113.61673 * 254.61577 * 14 12 11 32 32 H 1.09005 * 113.61396 * 25.51405 * 14 12 11 33 33 H 1.08994 * 109.47574 * 330.00062 * 18 17 15 34 34 H 1.08999 * 109.47522 * 59.99575 * 19 18 17 35 35 H 1.09001 * 109.47266 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47450 * 300.00026 * 19 18 17 37 37 H 1.09005 * 109.46697 * 59.99887 * 20 18 17 38 38 H 1.08997 * 109.47530 * 179.97438 * 20 18 17 39 39 H 1.08994 * 109.46934 * 300.00467 * 20 18 17 40 40 H 1.08993 * 113.61636 * 270.87622 * 21 15 14 41 41 H 1.09008 * 113.61006 * 139.97865 * 21 15 14 42 42 H 1.07999 * 123.35559 * 180.24826 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2249 1.1292 0.0000 4 6 1.6354 2.5161 0.0006 5 8 0.3755 2.4979 0.6747 6 14 2.7928 3.6825 0.8786 7 16 3.8969 0.7892 0.0062 8 6 3.5936 -0.9427 -0.0006 9 6 4.6231 -1.9862 0.0000 10 8 4.3001 -3.1596 0.0006 11 7 5.9272 -1.6463 0.0000 12 6 6.9561 -2.6892 0.0000 13 1 6.6070 -3.6282 -0.4296 14 6 8.3088 -2.2202 -0.5612 15 6 8.9692 -3.0401 0.5596 16 1 9.1718 -4.0747 0.2824 17 8 10.0969 -2.3937 1.1535 18 6 11.0880 -3.2949 1.6508 19 6 12.1042 -3.5950 0.5471 20 6 11.8039 -2.6580 2.8437 21 6 7.6653 -2.8573 1.3541 22 6 2.2445 -1.1601 -0.0003 23 1 -0.3635 0.0001 1.0276 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3633 -0.8900 -0.5139 26 1 1.4929 2.8507 -1.0269 27 1 0.4267 2.2093 1.5962 28 1 4.1167 3.6864 0.2060 29 1 2.2231 5.0538 0.8854 30 1 6.1847 -0.7111 -0.0009 31 1 8.5210 -2.5976 -1.5615 32 1 8.4707 -1.1461 -0.4699 33 1 10.6103 -4.2223 1.9667 34 1 12.5820 -2.6676 0.2312 35 1 12.8606 -4.2821 0.9266 36 1 11.5943 -4.0487 -0.3028 37 1 11.0799 -2.4442 3.6300 38 1 12.5597 -3.3456 3.2233 39 1 12.2816 -1.7307 2.5278 40 1 7.6513 -1.9576 1.9691 41 1 7.3581 -3.7493 1.9002 42 1 1.8018 -2.1452 0.0000 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:16:26 Heat of formation + Delta-G solvation = -58.134274 kcal Electronic energy + Delta-G solvation = -23303.210505 eV Core-core repulsion = 19763.429618 eV Total energy + Delta-G solvation = -3539.780887 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.123 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40132 -40.31854 -39.65375 -37.92876 -37.25243 -34.67785 -32.98812 -31.99257 -30.21354 -28.14732 -27.09101 -26.79004 -25.14057 -24.01977 -22.28786 -21.84495 -21.15144 -20.11183 -19.35679 -18.43033 -17.57145 -17.34259 -16.82548 -16.62564 -16.39912 -16.10712 -15.82409 -15.72755 -15.26184 -14.96612 -14.56696 -14.50245 -14.22718 -13.95905 -13.60957 -13.53346 -13.49618 -13.25738 -13.11159 -13.08749 -12.97204 -12.63409 -12.45134 -12.34493 -12.27281 -12.07620 -11.83400 -11.76926 -11.59378 -11.25558 -10.67896 -10.44554 -10.25040 -9.69855 -9.44169 -5.07341 -0.69629 0.25182 0.67918 1.09584 1.30991 1.53663 1.88658 1.90249 2.01820 2.77659 3.36054 3.37681 3.49146 3.59479 3.69617 3.77304 3.85571 4.00386 4.08643 4.12690 4.25312 4.28714 4.32499 4.44083 4.58623 4.63059 4.69478 4.72989 4.77797 4.81771 4.88040 4.90597 4.91379 4.95449 4.97181 5.01557 5.02396 5.28625 5.30949 5.37415 5.39166 5.47963 6.26990 6.35218 6.66406 6.95079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.099 4.099 3 C -0.233 4.233 4 C -0.030 4.030 5 O -0.539 6.539 6 Si 0.727 3.273 7 S 0.232 5.768 8 C -0.284 4.284 9 C 0.591 3.409 10 O -0.569 6.569 11 N -0.703 5.703 12 C 0.121 3.879 13 H 0.110 0.890 14 C -0.134 4.134 15 C 0.067 3.933 16 H 0.103 0.897 17 O -0.381 6.381 18 C 0.073 3.927 19 C -0.174 4.174 20 C -0.150 4.150 21 C -0.165 4.165 22 C -0.054 4.054 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.123 0.877 27 H 0.396 0.604 28 H -0.255 1.255 29 H -0.273 1.273 30 H 0.410 0.590 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.507 2.003 2.294 3.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.353 4.353 4 C -0.142 4.142 5 O -0.347 6.347 6 Si 0.630 3.370 7 S 0.500 5.500 8 C -0.404 4.404 9 C 0.379 3.621 10 O -0.450 6.450 11 N -0.354 5.354 12 C 0.016 3.984 13 H 0.127 0.873 14 C -0.172 4.172 15 C 0.009 3.991 16 H 0.120 0.880 17 O -0.301 6.301 18 C 0.016 3.984 19 C -0.231 4.231 20 C -0.208 4.208 21 C -0.204 4.204 22 C -0.088 4.088 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.079 0.921 26 H 0.140 0.860 27 H 0.246 0.754 28 H -0.181 1.181 29 H -0.198 1.198 30 H 0.247 0.753 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.958 3.210 1.681 5.366 hybrid contribution -1.463 -1.138 -0.619 1.955 sum 2.495 2.072 1.061 3.412 Atomic orbital electron populations 1.20628 0.87787 1.03010 1.03602 1.18779 0.99032 0.90199 1.03163 1.24685 0.98630 1.01280 1.10687 1.24581 0.92611 0.94722 1.02312 1.86507 1.27530 1.90069 1.30570 0.93985 0.75947 0.77882 0.89202 1.82870 1.02809 0.96104 1.68180 1.24542 0.97774 0.98211 1.19866 1.17212 0.82470 0.87151 0.75286 1.90821 1.82313 1.19902 1.51959 1.45724 1.04564 1.10671 1.74418 1.22268 0.85961 0.92316 0.97835 0.87250 1.23580 0.92076 1.02359 0.99219 1.23474 0.84627 0.97244 0.93794 0.87968 1.87962 1.30567 1.34235 1.77305 1.22300 0.89022 0.92838 0.94230 1.22314 0.99621 1.02274 0.98937 1.21883 1.00545 1.01766 0.96571 1.23994 0.95674 1.03399 0.97368 1.20823 0.91192 1.00417 0.96338 0.89652 0.90138 0.92114 0.86005 0.75366 1.18072 1.19819 0.75338 0.88966 0.88055 0.91403 0.92433 0.90598 0.92357 0.92355 0.89935 0.92337 0.88912 0.90891 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.14 8.67 71.23 0.62 0.76 16 2 C -0.10 -0.08 5.75 -21.05 -0.12 -0.20 16 3 C -0.23 0.28 5.54 24.68 0.14 0.41 16 4 C -0.03 0.10 2.76 71.24 0.20 0.29 16 5 O -0.54 1.98 9.85 -148.98 -1.47 0.51 16 6 Si 0.73 -3.23 31.31 68.60 2.15 -1.08 16 7 S 0.23 -0.36 19.78 -56.49 -1.12 -1.48 16 8 C -0.28 -1.14 6.45 24.08 0.16 -0.98 16 9 C 0.59 4.31 7.78 86.42 0.67 4.98 16 10 O -0.57 -8.52 16.46 -4.35 -0.07 -8.59 16 11 N -0.70 -1.02 5.36 -444.09 -2.38 -3.41 16 12 C 0.12 0.08 4.22 45.52 0.19 0.27 16 13 H 0.11 0.37 7.50 -2.39 -0.02 0.35 16 14 C -0.13 0.33 7.66 31.12 0.24 0.57 16 15 C 0.07 -0.07 4.13 31.12 0.13 0.06 16 16 H 0.10 -0.33 7.77 -2.39 -0.02 -0.35 16 17 O -0.38 -0.82 10.00 -148.98 -1.49 -2.31 16 18 C 0.07 -0.05 3.22 30.59 0.10 0.05 16 19 C -0.17 0.34 9.53 71.98 0.69 1.02 16 20 C -0.15 0.22 9.56 71.98 0.69 0.91 16 21 C -0.17 -0.03 7.71 31.12 0.24 0.21 16 22 C -0.05 -0.22 9.80 21.72 0.21 -0.01 16 23 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 24 H 0.08 -0.03 6.42 -2.39 -0.02 -0.04 16 25 H 0.06 -0.07 8.13 -2.38 -0.02 -0.09 16 26 H 0.12 -0.33 7.96 -2.39 -0.02 -0.35 16 27 H 0.40 -4.21 8.66 -74.06 -0.64 -4.85 16 28 H -0.26 0.35 7.09 99.48 0.71 1.05 16 29 H -0.27 -0.58 7.11 99.48 0.71 0.12 16 30 H 0.41 -1.23 7.83 -92.71 -0.73 -1.96 16 31 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H 0.10 -0.31 8.11 -2.38 -0.02 -0.33 16 33 H 0.07 -0.15 7.72 -2.39 -0.02 -0.17 16 34 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 38 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.07 0.07 8.14 -2.38 -0.02 0.06 16 42 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 Total: 0.00 -15.00 359.31 -0.54 -15.54 By element: Atomic # 1 Polarization: -7.23 SS G_CDS: -0.30 Total: -7.53 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 4.14 Total: 8.35 kcal Atomic # 7 Polarization: -1.02 SS G_CDS: -2.38 Total: -3.41 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -3.03 Total: -10.39 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.15 Total: -1.08 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -1.12 Total: -1.48 kcal Total: -15.00 -0.54 -15.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.597 kcal (2) G-P(sol) polarization free energy of solvation -15.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds