Wall clock time and date at job start Sat Mar 6 2021 13:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36776 * 125.80056 * 2 1 4 4 C 1.47262 * 126.94249 * 359.97438 * 3 2 1 5 5 O 1.21624 * 119.99674 * 359.70827 * 4 3 2 6 6 N 1.34775 * 119.99959 * 179.71607 * 4 3 2 7 7 C 1.46506 * 119.99832 * 180.02562 * 6 4 3 8 8 H 1.09004 * 112.84527 * 23.80128 * 7 6 4 9 9 C 1.53778 * 113.61145 * 154.99410 * 7 6 4 10 10 C 1.53787 * 87.08035 * 140.06537 * 9 7 6 11 11 H 1.09004 * 113.61202 * 89.11582 * 10 9 7 12 12 O 1.42896 * 113.61435 * 220.01917 * 10 9 7 13 13 C 1.42906 * 113.99728 * 209.99513 * 12 10 9 14 14 C 1.52999 * 109.46618 * 149.99986 * 13 12 10 15 15 C 1.52988 * 109.47405 * 270.00303 * 13 12 10 16 16 C 1.53778 * 113.68980 * 252.53155 * 7 6 4 17 17 C 1.46687 * 106.11528 * 179.72776 * 3 2 1 18 18 C 1.34485 * 106.33132 * 0.23438 * 17 3 2 19 19 C 1.50703 * 125.57218 * 179.97438 * 18 17 3 20 20 O 1.42900 * 109.47454 * 64.99678 * 19 18 17 21 21 Si 1.86291 * 109.47460 * 185.00104 * 19 18 17 22 22 N 1.34660 * 125.80700 * 180.13390 * 2 1 3 23 23 H 1.09000 * 109.47238 * 89.99992 * 1 2 3 24 24 H 1.08998 * 109.47064 * 210.00440 * 1 2 3 25 25 H 1.09000 * 109.47202 * 330.00213 * 1 2 3 26 26 H 0.97000 * 120.00109 * 359.97438 * 6 4 3 27 27 H 1.08998 * 113.61879 * 25.52019 * 9 7 6 28 28 H 1.08999 * 113.61887 * 254.61126 * 9 7 6 29 29 H 1.08998 * 109.46765 * 30.00597 * 13 12 10 30 30 H 1.08998 * 109.47053 * 60.00787 * 14 13 12 31 31 H 1.09004 * 109.46725 * 179.97438 * 14 13 12 32 32 H 1.09001 * 109.47487 * 300.00154 * 14 13 12 33 33 H 1.09004 * 109.47731 * 60.00002 * 15 13 12 34 34 H 1.09004 * 109.47397 * 180.02562 * 15 13 12 35 35 H 1.09007 * 109.47294 * 299.99721 * 15 13 12 36 36 H 1.08993 * 113.61229 * 105.46247 * 16 7 6 37 37 H 1.09000 * 113.61263 * 334.55897 * 16 7 6 38 38 H 1.08004 * 126.83511 * 180.26607 * 17 3 2 39 39 H 1.09008 * 109.46949 * 305.00102 * 19 18 17 40 40 H 0.96696 * 113.99821 * 60.00296 * 20 19 18 41 41 H 1.48504 * 110.00235 * 58.67713 * 21 19 18 42 42 H 1.48505 * 110.00464 * 179.97438 * 21 19 18 43 43 H 0.97001 * 124.84685 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5157 -0.0005 5 8 0.6839 2.7839 -0.0064 6 7 2.7850 3.5055 0.0053 7 6 2.3503 4.9045 0.0054 8 1 1.3451 5.0354 0.4062 9 6 3.3842 5.8707 0.6074 10 6 3.0063 6.8504 -0.5162 11 1 2.1805 7.5134 -0.2579 12 8 4.1254 7.5455 -1.0699 13 6 3.8129 8.8493 -1.5646 14 6 5.0401 9.7531 -1.4305 15 6 3.4090 8.7528 -3.0370 16 6 2.5771 5.6220 -1.3357 17 6 3.6882 0.6152 0.0067 18 6 3.6096 -0.7273 0.0048 19 6 4.7820 -1.6742 0.0094 20 8 5.5045 -1.5319 1.2340 21 14 4.1666 -3.4254 -0.1486 22 7 2.2948 -1.0921 -0.0026 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 3.7310 3.2915 0.0103 27 1 4.4100 5.5078 0.5435 28 1 3.1212 6.2264 1.6036 29 1 2.9882 9.2685 -0.9883 30 1 5.8648 9.3339 -2.0068 31 1 4.8019 10.7475 -1.8082 32 1 5.3279 9.8218 -0.3814 33 1 2.5347 8.1088 -3.1327 34 1 3.1711 9.7473 -3.4145 35 1 4.2338 8.3336 -3.6134 36 1 1.6625 5.7769 -1.9081 37 1 3.3822 5.1910 -1.9308 38 1 4.5890 1.2110 0.0125 39 1 5.4390 -1.4430 -0.8291 40 1 4.9807 -1.7226 2.0241 41 1 3.3864 -3.5785 -1.4028 42 1 5.3133 -4.3691 -0.1459 43 1 1.9735 -2.0073 -0.0050 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905398_9865296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:16:43 Heat of formation + Delta-G solvation = -49.970639 kcal Electronic energy + Delta-G solvation = -23697.454464 eV Core-core repulsion = 20131.675563 eV Total energy + Delta-G solvation = -3565.778902 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.49622 -41.01916 -39.66331 -37.86603 -37.65222 -34.50509 -32.99508 -32.79979 -31.89918 -28.93102 -28.15741 -26.71188 -26.27491 -24.87912 -23.06561 -22.29117 -21.58925 -21.19972 -20.30951 -18.68850 -18.23910 -17.70736 -16.98143 -16.71803 -16.50677 -16.39477 -15.99448 -15.63542 -15.37567 -15.15462 -14.94026 -14.60476 -14.47666 -14.10048 -13.91236 -13.79865 -13.61354 -13.48066 -13.37011 -13.33431 -13.09183 -12.68849 -12.61810 -12.55426 -12.24848 -12.21016 -11.94089 -11.86485 -11.59478 -10.94935 -10.48281 -10.43012 -10.11792 -9.81278 -9.17055 -5.15718 0.68222 1.14144 1.23434 1.51215 1.84238 2.01553 2.33776 2.49329 2.85135 3.43461 3.47084 3.57164 3.71345 3.83650 3.87447 3.88658 3.98423 4.09345 4.15249 4.23125 4.27508 4.37908 4.44229 4.50627 4.68097 4.71791 4.72078 4.73446 4.76459 4.82403 4.88824 4.92214 4.95023 5.00840 5.04338 5.11049 5.26421 5.28925 5.30879 5.57536 5.67648 5.85073 6.36722 6.42658 6.63532 6.71761 7.32129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.120 3.880 3 C -0.267 4.267 4 C 0.588 3.412 5 O -0.585 6.585 6 N -0.706 5.706 7 C 0.125 3.875 8 H 0.107 0.893 9 C -0.134 4.134 10 C 0.067 3.933 11 H 0.103 0.897 12 O -0.383 6.383 13 C 0.073 3.927 14 C -0.150 4.150 15 C -0.174 4.174 16 C -0.165 4.165 17 C -0.140 4.140 18 C -0.023 4.023 19 C -0.039 4.039 20 O -0.549 6.549 21 Si 0.769 3.231 22 N -0.533 5.533 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.410 0.590 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.396 0.604 41 H -0.278 1.278 42 H -0.291 1.291 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.422 -1.912 2.119 2.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.000 4.000 3 C -0.277 4.277 4 C 0.379 3.621 5 O -0.467 6.467 6 N -0.356 5.356 7 C 0.019 3.981 8 H 0.125 0.875 9 C -0.172 4.172 10 C 0.009 3.991 11 H 0.121 0.879 12 O -0.302 6.302 13 C 0.016 3.984 14 C -0.208 4.208 15 C -0.231 4.231 16 C -0.204 4.204 17 C -0.165 4.165 18 C -0.132 4.132 19 C -0.150 4.150 20 O -0.356 6.356 21 Si 0.673 3.327 22 N -0.133 5.133 23 H 0.099 0.901 24 H 0.114 0.886 25 H 0.101 0.899 26 H 0.247 0.753 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.171 0.829 39 H 0.139 0.861 40 H 0.246 0.754 41 H -0.205 1.205 42 H -0.217 1.217 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -0.558 -2.513 1.241 2.858 hybrid contribution 0.443 0.196 -0.572 0.750 sum -0.115 -2.317 0.669 2.414 Atomic orbital electron populations 1.20623 0.85915 1.04894 1.03940 1.20576 0.94347 0.85532 0.99495 1.20197 0.94165 0.91758 1.21582 1.17651 0.85041 0.85005 0.74440 1.90714 1.17969 1.84990 1.53070 1.45623 1.10003 1.05086 1.74873 1.22140 0.99458 0.79414 0.97048 0.87520 1.23564 1.00056 0.94704 0.98895 1.23551 0.89472 0.92005 0.94106 0.87914 1.87958 1.33968 1.29700 1.78579 1.22347 0.98359 0.83148 0.94519 1.21891 0.97189 0.99062 1.02621 1.22314 1.01541 1.02807 0.96448 1.23974 1.01863 0.96946 0.97638 1.21961 0.95402 0.93349 1.05739 1.20675 0.84831 0.95556 1.12088 1.24622 0.92230 1.07476 0.90707 1.86519 1.40531 1.92924 1.15639 0.94326 0.81668 0.72280 0.84430 1.41660 1.05086 1.08788 1.57783 0.90087 0.88635 0.89898 0.75324 0.88420 0.89083 0.91033 0.92563 0.89865 0.92095 0.92753 0.90513 0.92700 0.91293 0.89602 0.82860 0.86101 0.75360 1.20509 1.21741 0.73086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.00 9.88 71.24 0.70 0.71 16 2 C 0.12 0.25 7.18 41.78 0.30 0.55 16 3 C -0.27 -1.44 6.29 -19.04 -0.12 -1.56 16 4 C 0.59 5.12 7.81 86.62 0.68 5.79 16 5 O -0.59 -8.59 14.41 -4.11 -0.06 -8.65 16 6 N -0.71 -2.51 5.35 -443.45 -2.37 -4.88 16 7 C 0.12 0.33 4.24 45.51 0.19 0.52 16 8 H 0.11 0.56 7.46 -2.38 -0.02 0.54 16 9 C -0.13 0.07 7.66 31.12 0.24 0.31 16 10 C 0.07 0.06 4.26 31.12 0.13 0.19 16 11 H 0.10 -0.18 7.46 -2.39 -0.02 -0.20 16 12 O -0.38 -1.55 10.00 -148.98 -1.49 -3.04 16 13 C 0.07 0.05 3.33 30.59 0.10 0.16 16 14 C -0.15 0.07 9.56 71.98 0.69 0.76 16 15 C -0.17 -0.05 9.53 71.98 0.69 0.64 16 16 C -0.17 -0.42 7.71 31.12 0.24 -0.18 16 17 C -0.14 -0.26 10.45 23.62 0.25 -0.01 16 18 C -0.02 0.03 6.09 40.98 0.25 0.28 16 19 C -0.04 0.14 2.98 71.24 0.21 0.35 16 20 O -0.55 1.39 12.88 -148.98 -1.92 -0.53 16 21 Si 0.77 -4.60 30.96 68.60 2.12 -2.47 16 22 N -0.53 1.62 5.41 -171.07 -0.93 0.69 16 23 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 24 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 25 H 0.08 0.42 6.47 -2.39 -0.02 0.40 16 26 H 0.41 -0.14 7.85 -92.71 -0.73 -0.87 16 27 H 0.10 -0.06 8.12 -2.39 -0.02 -0.08 16 28 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.07 -0.12 7.42 -2.39 -0.02 -0.13 16 30 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.05 0.05 8.14 -2.38 -0.02 0.03 16 34 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.05 0.11 8.14 -2.38 -0.02 0.10 16 36 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.15 -0.10 7.70 -2.91 -0.02 -0.12 16 39 H 0.12 -0.32 7.96 -2.38 -0.02 -0.34 16 40 H 0.40 -4.05 8.70 -74.06 -0.64 -4.70 16 41 H -0.28 0.39 7.11 99.48 0.71 1.09 16 42 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 43 H 0.43 -3.90 6.72 -92.71 -0.62 -4.52 16 Total: 0.00 -18.82 355.62 -1.02 -19.83 By element: Atomic # 1 Polarization: -8.53 SS G_CDS: -0.92 Total: -9.45 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 4.55 Total: 8.50 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: -3.30 Total: -4.19 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -3.47 Total: -12.22 kcal Atomic # 14 Polarization: -4.60 SS G_CDS: 2.12 Total: -2.47 kcal Total: -18.82 -1.02 -19.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905398_9865296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.136 kcal (2) G-P(sol) polarization free energy of solvation -18.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds