Wall clock time and date at job start Sat Mar 6 2021 13:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47516 * 2 1 4 4 C 1.42897 * 113.99998 * 180.02562 * 3 2 1 5 5 H 1.08994 * 112.85202 * 20.32633 * 4 3 2 6 6 C 1.53785 * 113.61490 * 151.52890 * 4 3 2 7 7 C 1.53779 * 87.08502 * 139.97680 * 6 4 3 8 8 H 1.09001 * 113.61461 * 89.11076 * 7 6 4 9 9 N 1.46500 * 113.61704 * 219.93600 * 7 6 4 10 10 C 1.34775 * 120.00208 * 205.00039 * 9 7 6 11 11 O 1.21700 * 119.99443 * 354.74016 * 10 9 7 12 12 C 1.46670 * 120.00202 * 174.73726 * 10 9 7 13 13 C 1.37880 * 126.23083 * 4.90483 * 12 10 9 14 14 C 1.39836 * 107.08319 * 179.97438 * 13 12 10 15 15 C 1.35454 * 107.86487 * 359.97438 * 14 13 12 16 16 C 1.50696 * 125.56348 * 180.02562 * 15 14 13 17 17 O 1.42905 * 109.47500 * 209.97623 * 16 15 14 18 18 Si 1.86303 * 109.47404 * 329.97542 * 16 15 14 19 19 N 1.35536 * 108.87529 * 359.76627 * 15 14 13 20 20 C 1.46497 * 125.68287 * 180.26273 * 19 15 14 21 21 C 1.53784 * 113.61116 * 249.12945 * 4 3 2 22 22 H 1.08999 * 109.47190 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47037 * 300.00667 * 1 2 3 24 24 H 1.08995 * 109.46925 * 60.00074 * 1 2 3 25 25 H 1.09001 * 109.47037 * 239.99333 * 2 1 3 26 26 H 1.09006 * 109.47283 * 119.99605 * 2 1 3 27 27 H 1.09004 * 113.61007 * 254.52722 * 6 4 3 28 28 H 1.08997 * 113.61285 * 25.42592 * 6 4 3 29 29 H 0.96998 * 119.99518 * 24.99477 * 9 7 6 30 30 H 1.08000 * 126.45483 * 359.92376 * 13 12 10 31 31 H 1.07992 * 126.07016 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.47262 * 89.97754 * 16 15 14 33 33 H 0.96696 * 114.00588 * 180.02562 * 17 16 15 34 34 H 1.48501 * 110.00288 * 178.68032 * 18 16 15 35 35 H 1.48501 * 109.99743 * 300.00116 * 18 16 15 36 36 H 1.08996 * 109.47314 * 274.24555 * 20 19 15 37 37 H 1.08997 * 109.46569 * 34.24179 * 20 19 15 38 38 H 1.08992 * 109.46963 * 154.24489 * 20 19 15 39 39 H 1.09001 * 113.61569 * 334.57150 * 21 4 3 40 40 H 1.09002 * 113.61004 * 105.47190 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9270 0.5545 -0.3498 6 6 3.9470 2.7435 -0.6723 7 6 4.9910 2.8196 0.4542 8 1 5.9146 2.2858 0.2303 9 7 5.2247 4.1793 0.9469 10 6 6.3993 4.4926 1.5288 11 8 7.2284 3.6251 1.7316 12 6 6.6784 5.8791 1.9175 13 6 5.8020 6.9404 1.8362 14 6 6.4786 8.0690 2.3094 15 6 7.7284 7.6858 2.6642 16 6 8.7955 8.5891 3.2267 17 8 10.0831 8.1002 2.8454 18 14 8.5640 10.3135 2.5608 19 7 7.8608 6.3563 2.4362 20 6 9.0631 5.5605 2.6953 21 6 4.0059 2.0088 1.3159 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.3802 2.5762 -1.6585 28 1 3.2286 3.5630 -0.6579 29 1 4.5341 4.8541 0.8543 30 1 4.7850 6.9065 1.4744 31 1 6.0759 9.0685 2.3804 32 1 8.7209 8.6064 4.3140 33 1 10.8196 8.6338 3.1739 34 1 9.5909 11.2211 3.1327 35 1 8.6636 10.3034 1.0791 36 1 9.7312 5.6213 1.8362 37 1 9.5712 5.9470 3.5787 38 1 8.7815 4.5211 2.8636 39 1 3.3036 2.6272 1.8749 40 1 4.4865 1.2493 1.9326 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905468_10803936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:16:53 Heat of formation + Delta-G solvation = -35.535978 kcal Electronic energy + Delta-G solvation = -21935.488794 eV Core-core repulsion = 18525.873445 eV Total energy + Delta-G solvation = -3409.615349 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.57085 -41.02608 -39.63355 -37.87005 -37.49526 -34.73164 -33.60659 -31.88763 -31.30456 -27.52718 -27.21487 -26.79167 -24.92275 -23.69896 -22.98138 -21.44108 -21.18830 -20.15954 -18.73448 -18.51485 -18.25271 -17.16043 -16.80913 -16.75126 -16.49668 -16.28211 -15.92774 -15.36393 -15.27970 -14.57016 -14.50669 -14.41860 -13.98904 -13.94863 -13.63360 -13.50947 -13.43831 -13.32989 -12.99715 -12.80002 -12.72976 -12.47592 -12.13785 -12.10191 -11.95386 -11.77634 -11.13982 -10.76774 -10.43558 -10.18114 -9.75342 -9.06579 -4.87299 0.34377 1.16865 1.57675 1.69171 1.74961 2.03192 2.28822 2.29813 2.82864 3.12808 3.41140 3.51864 3.65838 3.74187 3.79596 3.87229 3.94917 4.18248 4.24247 4.27654 4.37006 4.39440 4.41512 4.49440 4.54747 4.62534 4.68691 4.71887 4.82500 4.92476 4.95476 5.01801 5.04142 5.09709 5.17113 5.27237 5.43388 5.76725 5.99728 6.13488 6.29110 6.44939 6.50705 7.08241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.390 6.390 4 C 0.065 3.935 5 H 0.102 0.898 6 C -0.131 4.131 7 C 0.125 3.875 8 H 0.105 0.895 9 N -0.692 5.692 10 C 0.587 3.413 11 O -0.588 6.588 12 C -0.090 4.090 13 C -0.123 4.123 14 C -0.206 4.206 15 C 0.044 3.956 16 C -0.070 4.070 17 O -0.562 6.562 18 Si 0.810 3.190 19 N -0.408 5.408 20 C 0.081 3.919 21 C -0.166 4.166 22 H 0.085 0.915 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.418 0.582 30 H 0.178 0.822 31 H 0.187 0.813 32 H 0.102 0.898 33 H 0.400 0.600 34 H -0.280 1.280 35 H -0.309 1.309 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.528 3.029 0.967 4.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.310 6.310 4 C 0.006 3.994 5 H 0.120 0.880 6 C -0.169 4.169 7 C 0.020 3.980 8 H 0.123 0.877 9 N -0.343 5.343 10 C 0.377 3.623 11 O -0.471 6.471 12 C -0.203 4.203 13 C -0.149 4.149 14 C -0.229 4.229 15 C -0.074 4.074 16 C -0.178 4.178 17 O -0.373 6.373 18 Si 0.713 3.287 19 N -0.081 5.081 20 C -0.061 4.061 21 C -0.205 4.205 22 H 0.103 0.897 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.256 0.744 30 H 0.195 0.805 31 H 0.204 0.796 32 H 0.120 0.880 33 H 0.251 0.749 34 H -0.206 1.206 35 H -0.236 1.236 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.762 2.505 0.425 3.752 hybrid contribution 1.406 -0.631 0.217 1.556 sum -1.355 1.874 0.642 2.400 Atomic orbital electron populations 1.21772 0.93282 1.03196 1.02695 1.22678 0.96105 0.83165 1.00761 1.87922 1.20771 1.27621 1.94649 1.23469 0.81192 0.98569 0.96139 0.88020 1.23556 0.96747 0.98274 0.98286 1.22219 0.97841 0.82457 0.95478 0.87750 1.45430 1.15991 1.13227 1.59638 1.17258 0.82136 0.86163 0.76728 1.90753 1.48247 1.50944 1.57118 1.20213 0.89546 0.94774 1.15786 1.21726 0.99993 0.90537 1.02628 1.20971 0.92641 1.01260 1.08058 1.20621 0.97489 0.83017 1.06287 1.24925 0.81910 1.07382 1.03544 1.86529 1.15637 1.55673 1.79420 0.93430 0.88124 0.70633 0.76496 1.43909 1.11017 1.07718 1.45454 1.22129 0.84834 0.96192 1.02904 1.24024 0.98370 1.00122 0.98015 0.89669 0.92403 0.92154 0.92342 0.92936 0.88986 0.87680 0.74418 0.80466 0.79590 0.88012 0.74852 1.20622 1.23642 0.91596 0.88561 0.89707 0.88914 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.21 10.28 71.98 0.74 0.95 16 2 C 0.05 -0.01 6.50 71.98 0.47 0.45 16 3 O -0.39 -1.18 10.35 -148.98 -1.54 -2.72 16 4 C 0.06 -0.02 4.30 31.12 0.13 0.11 16 5 H 0.10 -0.27 7.88 -2.39 -0.02 -0.29 16 6 C -0.13 0.29 7.66 31.12 0.24 0.53 16 7 C 0.13 0.16 4.20 45.58 0.19 0.35 16 8 H 0.10 0.46 7.53 -2.39 -0.02 0.44 16 9 N -0.69 -1.25 5.35 -443.72 -2.37 -3.63 16 10 C 0.59 5.26 7.77 86.44 0.67 5.94 16 11 O -0.59 -9.38 14.21 -4.35 -0.06 -9.44 16 12 C -0.09 -0.67 6.89 40.35 0.28 -0.39 16 13 C -0.12 -0.14 10.36 22.57 0.23 0.10 16 14 C -0.21 -0.01 9.37 22.01 0.21 0.19 16 15 C 0.04 0.17 6.17 41.34 0.26 0.42 16 16 C -0.07 0.10 2.89 71.23 0.21 0.30 16 17 O -0.56 -0.33 10.48 -148.98 -1.56 -1.90 16 18 Si 0.81 -3.10 31.10 68.60 2.13 -0.96 16 19 N -0.41 -3.41 3.16 -519.74 -1.64 -5.05 16 20 C 0.08 0.63 9.38 127.77 1.20 1.83 16 21 C -0.17 -0.19 7.73 31.18 0.24 0.05 16 22 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 23 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 24 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.05 -0.06 8.14 -2.38 -0.02 -0.08 16 27 H 0.09 -0.34 8.14 -2.38 -0.02 -0.36 16 28 H 0.10 -0.35 8.12 -2.39 -0.02 -0.36 16 29 H 0.42 -1.61 7.63 -92.71 -0.71 -2.32 16 30 H 0.18 -1.10 7.45 -2.91 -0.02 -1.12 16 31 H 0.19 -1.42 6.85 -2.91 -0.02 -1.44 16 32 H 0.10 -0.56 7.96 -2.39 -0.02 -0.58 16 33 H 0.40 -3.12 8.74 -74.06 -0.65 -3.77 16 34 H -0.28 0.16 7.11 99.48 0.71 0.86 16 35 H -0.31 -1.73 7.11 99.48 0.71 -1.02 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.10 0.44 7.09 -2.39 -0.02 0.43 16 38 H 0.08 0.93 6.01 -2.39 -0.01 0.92 16 39 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 Total: 0.00 -21.06 330.91 -0.25 -21.31 By element: Atomic # 1 Polarization: -8.20 SS G_CDS: -0.26 Total: -8.46 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.06 Total: 10.85 kcal Atomic # 7 Polarization: -4.66 SS G_CDS: -4.02 Total: -8.68 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -3.17 Total: -14.06 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: 2.13 Total: -0.96 kcal Total: -21.06 -0.25 -21.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905468_10803936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.223 kcal (2) G-P(sol) polarization free energy of solvation -21.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds