Wall clock time and date at job start Sat Mar 6 2021 13:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47164 * 2 1 4 4 C 1.42901 * 113.99940 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.85109 * 341.18688 * 4 3 2 6 6 C 1.53953 * 113.67072 * 112.43812 * 4 3 2 7 7 C 1.53778 * 87.02238 * 139.93255 * 6 4 3 8 8 H 1.09001 * 113.61993 * 89.23113 * 7 6 4 9 9 N 1.46506 * 113.61561 * 220.05113 * 7 6 4 10 10 C 1.34777 * 119.99873 * 254.13831 * 9 7 6 11 11 O 1.21592 * 119.99797 * 359.97438 * 10 9 7 12 12 C 1.47576 * 120.00051 * 179.97438 * 10 9 7 13 13 C 1.40195 * 120.19117 * 179.71851 * 12 10 9 14 14 N 1.39665 * 120.15735 * 0.02562 * 13 12 10 15 15 C 1.36661 * 125.67966 * 270.02218 * 14 13 12 16 16 C 1.50697 * 125.90105 * 359.95930 * 15 14 13 17 17 C 1.34803 * 108.19136 * 179.97438 * 15 14 13 18 18 C 1.40994 * 107.48762 * 0.02562 * 17 15 14 19 19 C 1.50701 * 126.25395 * 179.97438 * 18 17 15 20 20 O 1.42902 * 109.46765 * 105.02494 * 19 18 17 21 21 Si 1.86300 * 109.47432 * 345.02763 * 19 18 17 22 22 C 1.34805 * 107.48489 * 359.75372 * 18 17 15 23 23 C 1.50699 * 125.90132 * 180.25433 * 22 18 17 24 24 C 1.38765 * 119.68836 * 179.74942 * 13 12 10 25 25 C 1.38070 * 120.07383 * 0.55423 * 24 13 12 26 26 C 1.38532 * 120.38897 * 359.69561 * 25 24 13 27 27 C 1.37827 * 120.31584 * 0.02616 * 26 25 24 28 28 C 1.53781 * 87.17216 * 334.63708 * 7 6 4 29 29 H 1.08989 * 109.47107 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46799 * 300.00538 * 1 2 3 31 31 H 1.09002 * 109.46751 * 60.00164 * 1 2 3 32 32 H 1.08997 * 109.47149 * 239.99328 * 2 1 3 33 33 H 1.09009 * 109.46830 * 119.99474 * 2 1 3 34 34 H 1.09004 * 113.61322 * 25.40807 * 6 4 3 35 35 H 1.08997 * 113.66667 * 254.46390 * 6 4 3 36 36 H 0.96995 * 120.00050 * 73.85945 * 9 7 6 37 37 H 1.08994 * 109.47548 * 89.99669 * 16 15 14 38 38 H 1.09005 * 109.46823 * 209.99867 * 16 15 14 39 39 H 1.09006 * 109.47047 * 329.99364 * 16 15 14 40 40 H 1.07998 * 126.25583 * 180.02562 * 17 15 14 41 41 H 1.08997 * 109.47152 * 225.02318 * 19 18 17 42 42 H 0.96704 * 113.99794 * 179.97438 * 20 19 18 43 43 H 1.48507 * 109.99875 * 59.99709 * 21 19 18 44 44 H 1.48494 * 110.00272 * 181.31424 * 21 19 18 45 45 H 1.08999 * 109.47702 * 270.16204 * 23 22 18 46 46 H 1.09003 * 109.47068 * 30.16202 * 23 22 18 47 47 H 1.09000 * 109.47007 * 150.15913 * 23 22 18 48 48 H 1.07997 * 119.96549 * 180.27585 * 24 13 12 49 49 H 1.07999 * 119.80437 * 179.72526 * 25 24 13 50 50 H 1.08001 * 119.84149 * 180.02562 * 26 25 24 51 51 H 1.08000 * 120.04539 * 180.02562 * 27 26 25 52 52 H 1.09002 * 113.61280 * 139.93674 * 28 7 6 53 53 H 1.08998 * 113.62092 * 270.75788 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9281 0.5456 0.3230 6 6 4.0040 2.0455 -1.3040 7 6 4.9898 2.8313 -0.4233 8 1 5.9146 2.2931 -0.2157 9 7 5.2207 4.2036 -0.8813 10 6 6.3813 4.5259 -1.4860 11 8 7.2368 3.6777 -1.6510 12 6 6.6137 5.9081 -1.9479 13 6 7.8218 6.2490 -2.5722 14 7 8.8117 5.2819 -2.7606 15 6 9.8143 4.9855 -1.8805 16 6 10.0411 5.6450 -0.5446 17 6 10.5654 4.0015 -2.4141 18 6 10.0096 3.6771 -3.6685 19 6 10.5195 2.6304 -4.6254 20 8 9.6619 1.4882 -4.5831 21 14 12.2457 2.1293 -4.1355 22 6 8.9358 4.4709 -3.8533 23 6 8.0306 4.4666 -5.0581 24 6 8.0273 7.5506 -3.0071 25 6 7.0499 8.5068 -2.8149 26 6 5.8571 8.1745 -2.1937 27 6 5.6338 6.8853 -1.7605 28 6 3.9490 2.7251 0.7038 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3006 2.6790 -1.8444 35 1 4.4844 1.3042 -1.9426 36 1 4.5367 4.8793 -0.7530 37 1 9.4943 5.1020 0.2262 38 1 11.1056 5.6348 -0.3105 39 1 9.6875 6.6754 -0.5834 40 1 11.4342 3.5452 -1.9631 41 1 10.5325 3.0378 -5.6363 42 1 9.9301 0.7728 -5.1759 43 1 12.2415 1.5722 -2.7589 44 1 12.7719 1.1207 -5.0899 45 1 8.4116 5.1668 -5.8015 46 1 7.9993 3.4643 -5.4855 47 1 7.0260 4.7654 -4.7588 48 1 8.9545 7.8172 -3.4925 49 1 7.2162 9.5195 -3.1511 50 1 5.0985 8.9294 -2.0483 51 1 4.7020 6.6310 -1.2772 52 1 4.3850 2.5315 1.6839 53 1 3.2314 3.5455 0.7144 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905468_12335856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:17:21 Heat of formation + Delta-G solvation = 7.508000 kcal Electronic energy + Delta-G solvation = -34964.890189 eV Core-core repulsion = 30577.623948 eV Total energy + Delta-G solvation = -4387.266241 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.193 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.85886 -41.36154 -40.26721 -39.21068 -37.81226 -37.54404 -34.75841 -34.14002 -33.60898 -32.32908 -31.63900 -30.47816 -30.11561 -27.30919 -26.87728 -26.06031 -24.61770 -24.42802 -23.73796 -23.33656 -21.78032 -21.32458 -20.83191 -19.95966 -18.80665 -18.45771 -18.40800 -17.78071 -17.13748 -16.71720 -16.62061 -16.44525 -16.13225 -15.94142 -15.80872 -15.69079 -15.31382 -15.07664 -14.79343 -14.73816 -14.41958 -14.24253 -14.16342 -14.06120 -13.74562 -13.65514 -13.58059 -13.49409 -13.42800 -13.18922 -13.10917 -12.93959 -12.82519 -12.59805 -12.51805 -12.39002 -12.36207 -12.19655 -12.00986 -11.87664 -11.84319 -11.02618 -10.50324 -10.33383 -10.30434 -10.12142 -10.00751 -9.53435 -8.67192 -4.88483 -0.41950 0.05421 1.18966 1.41100 1.60702 1.72879 1.85288 1.89088 1.98142 2.06434 2.60286 2.74112 3.32352 3.45071 3.54235 3.63829 3.68171 3.72297 3.77168 3.79074 3.97609 4.04758 4.12738 4.17188 4.19520 4.21383 4.25205 4.25870 4.32252 4.39200 4.43923 4.48953 4.57944 4.61001 4.62322 4.62509 4.65695 4.69551 4.74967 4.75753 4.84480 4.88947 4.94803 4.96522 4.97856 4.98668 5.07085 5.19758 5.22539 5.24846 5.29616 5.39434 5.43566 5.64844 6.10361 6.21631 6.25553 6.39146 6.63970 6.71371 7.10234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.388 6.388 4 C 0.066 3.934 5 H 0.098 0.902 6 C -0.165 4.165 7 C 0.127 3.873 8 H 0.096 0.904 9 N -0.702 5.702 10 C 0.542 3.458 11 O -0.546 6.546 12 C -0.146 4.146 13 C 0.143 3.857 14 N -0.390 5.390 15 C 0.032 3.968 16 C -0.076 4.076 17 C -0.207 4.207 18 C -0.172 4.172 19 C -0.049 4.049 20 O -0.561 6.561 21 Si 0.776 3.224 22 C 0.055 3.945 23 C -0.074 4.074 24 C -0.119 4.119 25 C -0.075 4.075 26 C -0.106 4.106 27 C -0.076 4.076 28 C -0.128 4.128 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.413 0.587 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.385 0.615 43 H -0.310 1.310 44 H -0.284 1.284 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.141 0.859 49 H 0.167 0.833 50 H 0.170 0.830 51 H 0.158 0.842 52 H 0.091 0.909 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 7.155 0.240 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.308 6.308 4 C 0.007 3.993 5 H 0.116 0.884 6 C -0.204 4.204 7 C 0.022 3.978 8 H 0.114 0.886 9 N -0.355 5.355 10 C 0.330 3.670 11 O -0.424 6.424 12 C -0.150 4.150 13 C 0.053 3.947 14 N -0.065 5.065 15 C -0.077 4.077 16 C -0.134 4.134 17 C -0.231 4.231 18 C -0.178 4.178 19 C -0.158 4.158 20 O -0.370 6.370 21 Si 0.682 3.318 22 C -0.056 4.056 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.093 4.093 26 C -0.124 4.124 27 C -0.095 4.095 28 C -0.166 4.166 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.155 0.845 41 H 0.098 0.902 42 H 0.234 0.766 43 H -0.238 1.238 44 H -0.211 1.211 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.159 0.841 49 H 0.184 0.816 50 H 0.187 0.813 51 H 0.176 0.824 52 H 0.109 0.891 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.359 6.653 0.861 7.502 hybrid contribution -0.759 -1.492 -0.364 1.713 sum -4.118 5.161 0.497 6.621 Atomic orbital electron populations 1.21768 0.93060 1.03259 1.02748 1.22691 0.96257 0.83130 1.00693 1.87913 1.20591 1.27645 1.94620 1.23470 0.81255 0.98518 0.96026 0.88377 1.23995 0.98388 1.00086 0.97967 1.22060 0.97419 0.82664 0.95684 0.88600 1.45692 1.17913 1.11926 1.59953 1.18571 0.82291 0.88158 0.77989 1.90945 1.44690 1.51088 1.55661 1.20222 0.96097 0.94195 1.04516 1.17848 0.87865 0.89120 0.99895 1.40973 1.21544 1.28637 1.15297 1.20466 0.91292 1.01374 0.94548 1.20281 1.03736 0.99274 0.90080 1.20571 1.03820 1.01981 0.96759 1.18595 1.00355 1.01073 0.97792 1.24296 1.04653 0.86529 1.00367 1.86654 1.53422 1.28612 1.68354 0.94020 0.76981 0.85035 0.75747 1.20244 0.98847 0.95556 0.90910 1.20226 0.96338 1.03332 0.93284 1.21501 1.01569 0.90731 0.99997 1.21713 0.92031 1.00384 0.95181 1.21691 0.98157 0.96362 0.96173 1.21603 0.97952 0.92556 0.97419 1.23532 0.96684 0.98308 0.98085 0.89625 0.92027 0.92373 0.93123 0.92353 0.88895 0.92040 0.74850 0.92462 0.88588 0.91253 0.84511 0.90159 0.76553 1.23773 1.21096 0.89446 0.90763 0.93117 0.84132 0.81577 0.81268 0.82427 0.89084 0.87505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.13 10.28 71.98 0.74 0.87 16 2 C 0.05 0.04 6.50 71.98 0.47 0.50 16 3 O -0.39 -1.53 10.36 -148.98 -1.54 -3.07 16 4 C 0.07 0.09 4.31 31.18 0.13 0.22 16 5 H 0.10 -0.03 7.87 -2.39 -0.02 -0.05 16 6 C -0.17 -0.53 7.73 31.18 0.24 -0.29 16 7 C 0.13 0.37 4.21 45.52 0.19 0.56 16 8 H 0.10 0.76 7.50 -2.39 -0.02 0.74 16 9 N -0.70 -1.23 5.31 -443.15 -2.35 -3.58 16 10 C 0.54 4.53 7.77 86.71 0.67 5.20 16 11 O -0.55 -9.65 13.30 -4.01 -0.05 -9.70 16 12 C -0.15 -0.53 5.89 -20.00 -0.12 -0.65 16 13 C 0.14 0.77 4.52 38.49 0.17 0.94 16 14 N -0.39 -4.05 1.45 -319.55 -0.46 -4.51 16 15 C 0.03 0.36 6.01 41.02 0.25 0.61 16 16 C -0.08 -0.42 10.09 71.23 0.72 0.30 16 17 C -0.21 -2.74 9.27 22.16 0.21 -2.53 16 18 C -0.17 -2.27 5.39 -19.98 -0.11 -2.38 16 19 C -0.05 -0.44 2.49 71.24 0.18 -0.26 16 20 O -0.56 -6.64 12.86 -148.98 -1.92 -8.56 16 21 Si 0.78 4.63 30.84 68.60 2.12 6.74 16 22 C 0.05 0.67 5.98 41.02 0.25 0.92 16 23 C -0.07 -0.59 9.87 71.24 0.70 0.11 16 24 C -0.12 0.07 9.96 22.36 0.22 0.29 16 25 C -0.07 0.48 10.03 22.30 0.22 0.71 16 26 C -0.11 0.83 10.02 22.24 0.22 1.06 16 27 C -0.08 0.35 9.54 22.52 0.21 0.56 16 28 C -0.13 0.16 7.66 31.12 0.24 0.40 16 29 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 31 H 0.06 0.01 8.14 -2.39 -0.02 0.00 16 32 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.06 -0.07 8.14 -2.38 -0.02 -0.09 16 34 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.41 -1.98 6.75 -92.71 -0.63 -2.60 16 37 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 39 H 0.07 0.21 7.83 -2.38 -0.02 0.19 16 40 H 0.14 1.55 6.55 -2.91 -0.02 1.53 16 41 H 0.08 0.34 7.96 -2.39 -0.02 0.32 16 42 H 0.39 0.99 8.74 -74.05 -0.65 0.34 16 43 H -0.31 -4.47 7.06 99.48 0.70 -3.77 16 44 H -0.28 -2.27 7.11 99.48 0.71 -1.57 16 45 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.07 0.69 7.87 -2.39 -0.02 0.67 16 47 H 0.05 0.44 7.83 -2.39 -0.02 0.42 16 48 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 49 H 0.17 -2.01 8.06 -2.91 -0.02 -2.03 16 50 H 0.17 -2.36 8.06 -2.91 -0.02 -2.39 16 51 H 0.16 -1.63 6.40 -2.91 -0.02 -1.65 16 52 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 53 H 0.11 -0.34 8.11 -2.39 -0.02 -0.35 16 Total: 0.00 -26.53 432.93 1.28 -25.25 By element: Atomic # 1 Polarization: -9.41 SS G_CDS: -0.32 Total: -9.72 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 5.82 Total: 7.16 kcal Atomic # 7 Polarization: -5.28 SS G_CDS: -2.82 Total: -8.10 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -3.51 Total: -21.33 kcal Atomic # 14 Polarization: 4.63 SS G_CDS: 2.12 Total: 6.74 kcal Total: -26.53 1.28 -25.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905468_12335856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.757 kcal (2) G-P(sol) polarization free energy of solvation -26.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds