Wall clock time and date at job start Sat Mar 6 2021 13:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.46640 * 2 1 4 4 C 1.42907 * 113.99340 * 179.97438 * 3 2 1 5 5 H 1.08989 * 112.85136 * 18.80493 * 4 3 2 6 6 C 1.53782 * 113.60871 * 150.00349 * 4 3 2 7 7 C 1.53773 * 87.08125 * 140.06416 * 6 4 3 8 8 H 1.08998 * 113.62063 * 89.19399 * 7 6 4 9 9 N 1.46501 * 113.61529 * 220.01576 * 7 6 4 10 10 C 1.34773 * 120.00388 * 204.99821 * 9 7 6 11 11 O 1.21614 * 119.99694 * 359.97438 * 10 9 7 12 12 C 1.47381 * 120.00201 * 179.97438 * 10 9 7 13 13 C 1.36414 * 127.19011 * 179.97438 * 12 10 9 14 14 C 1.50705 * 125.80563 * 0.02562 * 13 12 10 15 15 O 1.33654 * 108.39353 * 180.02562 * 13 12 10 16 16 C 1.34215 * 110.90967 * 0.02562 * 15 13 12 17 17 C 1.50700 * 125.43644 * 180.02562 * 16 15 13 18 18 O 1.42900 * 109.47103 * 120.02159 * 17 16 15 19 19 Si 1.86298 * 109.47132 * 0.02562 * 17 16 15 20 20 C 1.34172 * 109.12184 * 359.97438 * 16 15 13 21 21 C 1.53783 * 113.68623 * 247.53145 * 4 3 2 22 22 H 1.09003 * 109.47314 * 60.00335 * 1 2 3 23 23 H 1.09007 * 109.47062 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47471 * 300.00107 * 1 2 3 25 25 H 1.08998 * 109.46952 * 239.99974 * 2 1 3 26 26 H 1.08996 * 109.46918 * 119.99811 * 2 1 3 27 27 H 1.08994 * 113.62060 * 25.51154 * 6 4 3 28 28 H 1.09004 * 113.68507 * 254.62095 * 6 4 3 29 29 H 0.96999 * 119.99790 * 24.99630 * 9 7 6 30 30 H 1.08998 * 109.47091 * 179.97438 * 14 13 12 31 31 H 1.09001 * 109.46517 * 299.99758 * 14 13 12 32 32 H 1.08999 * 109.46699 * 59.99652 * 14 13 12 33 33 H 1.08998 * 109.47145 * 240.02424 * 17 16 15 34 34 H 0.96702 * 113.99810 * 299.99919 * 18 17 16 35 35 H 1.48508 * 109.99868 * 179.97438 * 19 17 16 36 36 H 1.48497 * 110.00070 * 301.31859 * 19 17 16 37 37 H 1.08001 * 127.01977 * 180.02562 * 20 16 15 38 38 H 1.08999 * 113.61251 * 105.46566 * 21 4 3 39 39 H 1.08998 * 113.62106 * 334.56233 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9280 0.5457 -0.3228 6 6 3.9488 2.7252 -0.7039 7 6 4.9909 2.8303 0.4220 8 1 5.9152 2.2916 0.2132 9 7 5.2233 4.2022 0.8804 10 6 6.3967 4.5308 1.4561 11 8 7.2626 3.6882 1.5954 12 6 6.6307 5.9111 1.9167 13 6 7.7544 6.4015 2.5147 14 6 9.0013 5.6151 2.8278 15 8 7.5616 7.6980 2.7759 16 6 6.3437 8.0920 2.3722 17 6 5.7871 9.4859 2.5068 18 8 5.4734 10.0008 1.2112 19 14 7.0525 10.5839 3.3216 20 6 5.7014 7.0468 1.8287 21 6 4.0037 2.0456 1.3021 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.2309 3.5453 -0.7123 28 1 4.3836 2.5332 -1.6848 29 1 4.5325 4.8741 0.7696 30 1 9.7325 6.2680 3.3043 31 1 8.7536 4.7941 3.5006 32 1 9.4196 5.2146 1.9043 33 1 4.8834 9.4591 3.1157 34 1 6.2326 10.0530 0.6144 35 1 6.5159 11.9617 3.4596 36 1 7.4109 10.0418 4.6568 37 1 4.7052 7.0412 1.4116 38 1 4.4828 1.3037 1.9409 39 1 3.3008 2.6799 1.8422 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10905468_13308374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:18:32 Heat of formation + Delta-G solvation = -71.994627 kcal Electronic energy + Delta-G solvation = -21934.123120 eV Core-core repulsion = 18425.208144 eV Total energy + Delta-G solvation = -3508.914977 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.78778 -41.17216 -39.75962 -38.01550 -37.52614 -34.66213 -33.84263 -33.05749 -31.75267 -29.42529 -26.81156 -26.46563 -25.18807 -23.91854 -23.58693 -22.10308 -21.39336 -20.35318 -18.91000 -18.35169 -17.90519 -17.69848 -16.86280 -16.73335 -16.56739 -16.30575 -15.99451 -15.66605 -15.55115 -14.90947 -14.55560 -14.25500 -14.16813 -14.03704 -13.94919 -13.82161 -13.52793 -13.44963 -12.89186 -12.80573 -12.77368 -12.50452 -12.26093 -12.13387 -11.96877 -11.79458 -11.16622 -10.95932 -10.62420 -10.44555 -10.12969 -9.59139 -5.00797 0.20610 0.80630 1.17377 1.39090 1.75530 1.90883 2.06801 2.19959 2.81219 3.20807 3.40337 3.46828 3.51372 3.70009 3.77036 3.79503 3.85464 4.09137 4.16561 4.23076 4.30623 4.37870 4.46013 4.47698 4.59657 4.62910 4.66505 4.69174 4.75749 4.81033 4.91147 4.94772 5.00696 5.03804 5.12091 5.19529 5.25070 5.45413 5.87624 6.27842 6.45037 6.62077 7.11243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.392 6.392 4 C 0.065 3.935 5 H 0.105 0.895 6 C -0.134 4.134 7 C 0.125 3.875 8 H 0.111 0.889 9 N -0.701 5.701 10 C 0.589 3.411 11 O -0.573 6.573 12 C -0.270 4.270 13 C 0.086 3.914 14 C -0.076 4.076 15 O -0.171 6.171 16 C -0.060 4.060 17 C -0.024 4.024 18 O -0.539 6.539 19 Si 0.778 3.222 20 C -0.149 4.149 21 C -0.167 4.167 22 H 0.059 0.941 23 H 0.085 0.915 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.412 0.588 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.138 0.862 34 H 0.400 0.600 35 H -0.279 1.279 36 H -0.295 1.295 37 H 0.175 0.825 38 H 0.071 0.929 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 0.399 -2.360 2.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.312 6.312 4 C 0.006 3.994 5 H 0.123 0.877 6 C -0.172 4.172 7 C 0.019 3.981 8 H 0.129 0.871 9 N -0.352 5.352 10 C 0.379 3.621 11 O -0.454 6.454 12 C -0.275 4.275 13 C 0.033 3.967 14 C -0.132 4.132 15 O -0.068 6.068 16 C -0.108 4.108 17 C -0.135 4.135 18 O -0.347 6.347 19 Si 0.682 3.318 20 C -0.168 4.168 21 C -0.206 4.206 22 H 0.078 0.922 23 H 0.104 0.896 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.249 0.751 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.251 0.749 35 H -0.206 1.206 36 H -0.222 1.222 37 H 0.192 0.808 38 H 0.090 0.910 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.395 0.709 -1.221 1.466 hybrid contribution -0.895 -0.539 0.128 1.053 sum -0.501 0.170 -1.093 1.214 Atomic orbital electron populations 1.21777 0.93382 1.03217 1.02607 1.22683 0.96042 0.83127 1.00843 1.87927 1.20910 1.27701 1.94648 1.23488 0.81131 0.98608 0.96134 0.87739 1.23562 0.96872 0.98279 0.98449 1.22195 0.97913 0.82460 0.95485 0.87126 1.45630 1.16634 1.12219 1.60689 1.17400 0.81974 0.86152 0.76589 1.90767 1.45229 1.51416 1.57993 1.21218 0.97474 0.95145 1.13644 1.23238 0.97592 0.81175 0.94723 1.20586 0.90348 0.97903 1.04341 1.83681 1.33237 1.24947 1.64899 1.22916 0.84131 0.98913 1.04797 1.24462 1.07170 0.90050 0.91791 1.86535 1.40382 1.84455 1.23365 0.93260 0.82592 0.75476 0.80425 1.22777 1.01097 0.89848 1.03085 1.23984 0.98407 1.00187 0.98026 0.92213 0.89588 0.92528 0.92211 0.92860 0.88293 0.88893 0.75091 0.88219 0.89015 0.88384 0.84515 0.74909 1.20559 1.22227 0.80781 0.91012 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.18 10.28 71.98 0.74 0.92 16 2 C 0.05 -0.01 6.50 71.98 0.47 0.45 16 3 O -0.39 -1.30 10.36 -148.98 -1.54 -2.85 16 4 C 0.06 -0.02 4.31 31.12 0.13 0.11 16 5 H 0.10 -0.32 7.87 -2.39 -0.02 -0.34 16 6 C -0.13 0.28 7.66 31.12 0.24 0.52 16 7 C 0.12 0.09 4.24 45.52 0.19 0.29 16 8 H 0.11 0.34 7.46 -2.39 -0.02 0.32 16 9 N -0.70 -1.00 5.35 -443.35 -2.37 -3.37 16 10 C 0.59 3.98 7.81 86.65 0.68 4.66 16 11 O -0.57 -7.18 15.26 -4.08 -0.06 -7.25 16 12 C -0.27 -1.23 6.31 -18.99 -0.12 -1.35 16 13 C 0.09 0.32 7.37 25.26 0.19 0.51 16 14 C -0.08 -0.02 9.14 71.24 0.65 0.63 16 15 O -0.17 -0.41 8.89 4.45 0.04 -0.37 16 16 C -0.06 -0.03 6.20 24.76 0.15 0.13 16 17 C -0.02 0.06 2.98 71.24 0.21 0.28 16 18 O -0.54 1.74 12.86 -148.98 -1.92 -0.18 16 19 Si 0.78 -1.95 32.08 68.60 2.20 0.25 16 20 C -0.15 -0.12 10.46 23.64 0.25 0.13 16 21 C -0.17 -0.16 7.71 31.12 0.24 0.08 16 22 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 23 H 0.09 -0.36 8.14 -2.38 -0.02 -0.38 16 24 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 25 H 0.06 -0.15 8.14 -2.39 -0.02 -0.16 16 26 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.10 -0.23 8.12 -2.39 -0.02 -0.25 16 28 H 0.09 -0.36 8.14 -2.38 -0.02 -0.38 16 29 H 0.41 -1.17 7.90 -92.71 -0.73 -1.90 16 30 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.09 0.15 8.08 -2.39 -0.02 0.13 16 32 H 0.10 0.06 8.08 -2.39 -0.02 0.04 16 33 H 0.14 -0.48 7.96 -2.39 -0.02 -0.50 16 34 H 0.40 -4.29 8.70 -74.06 -0.64 -4.93 16 35 H -0.28 -0.81 7.11 99.48 0.71 -0.10 16 36 H -0.30 -1.36 7.11 99.48 0.71 -0.66 16 37 H 0.17 -0.60 7.74 -2.91 -0.02 -0.62 16 38 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 Total: 0.00 -16.53 335.19 0.09 -16.44 By element: Atomic # 1 Polarization: -9.75 SS G_CDS: -0.27 Total: -10.03 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 4.02 Total: 7.35 kcal Atomic # 7 Polarization: -1.00 SS G_CDS: -2.37 Total: -3.37 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -3.48 Total: -10.64 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.20 Total: 0.25 kcal Total: -16.53 0.09 -16.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10905468_13308374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.556 kcal (2) G-P(sol) polarization free energy of solvation -16.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds