Wall clock time and date at job start Sat Mar 6 2021 13:19:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42902 * 109.47015 * 2 1
4 4 C 1.42899 * 114.00073 * 179.97438 * 3 2 1
5 5 H 1.09004 * 112.84762 * 341.20358 * 4 3 2
6 6 C 1.53773 * 113.61378 * 112.50241 * 4 3 2
7 7 C 1.53778 * 87.08398 * 139.98487 * 6 4 3
8 8 H 1.09001 * 113.69268 * 89.12451 * 7 6 4
9 9 N 1.46506 * 113.61548 * 220.02387 * 7 6 4
10 10 C 1.34770 * 119.99637 * 252.49043 * 9 7 6
11 11 O 1.21281 * 120.00266 * 0.02562 * 10 9 7
12 12 C 1.50702 * 120.00039 * 180.02562 * 10 9 7
13 13 O 1.42902 * 109.47390 * 180.02562 * 12 10 9
14 14 C 1.35898 * 116.99730 * 180.02562 * 13 12 10
15 15 C 1.38715 * 120.05279 * 179.97438 * 14 13 12
16 16 C 1.38166 * 119.94528 * 180.02562 * 15 14 13
17 17 C 1.50695 * 119.97278 * 180.02562 * 16 15 14
18 18 O 1.42899 * 109.47032 * 300.00128 * 17 16 15
19 19 Si 1.86300 * 109.47154 * 180.02562 * 17 16 15
20 20 C 1.38243 * 120.05257 * 0.02562 * 16 15 14
21 21 C 1.38289 * 120.11231 * 0.02562 * 20 16 15
22 22 C 1.38117 * 120.05983 * 359.97438 * 21 20 16
23 23 C 1.53772 * 113.61546 * 210.00263 * 4 3 2
24 24 H 1.08997 * 109.47062 * 299.99986 * 1 2 3
25 25 H 1.09006 * 109.47042 * 60.00023 * 1 2 3
26 26 H 1.08999 * 109.47114 * 179.97438 * 1 2 3
27 27 H 1.08997 * 109.47062 * 240.00014 * 2 1 3
28 28 H 1.08998 * 109.46974 * 120.00345 * 2 1 3
29 29 H 1.09004 * 113.61397 * 25.43291 * 6 4 3
30 30 H 1.09000 * 113.61802 * 254.53430 * 6 4 3
31 31 H 0.96998 * 120.00078 * 72.49773 * 9 7 6
32 32 H 1.09000 * 109.47047 * 59.99904 * 12 10 9
33 33 H 1.09007 * 109.46658 * 300.00439 * 12 10 9
34 34 H 1.08002 * 120.02716 * 359.74939 * 15 14 13
35 35 H 1.09001 * 109.47321 * 60.00277 * 17 16 15
36 36 H 0.96695 * 114.00418 * 300.00052 * 18 17 16
37 37 H 1.48494 * 110.00225 * 58.67554 * 19 17 16
38 38 H 1.48503 * 110.00066 * 180.02562 * 19 17 16
39 39 H 1.08000 * 119.94011 * 179.97438 * 20 16 15
40 40 H 1.08001 * 119.96912 * 179.97438 * 21 20 16
41 41 H 1.07995 * 120.03415 * 180.02562 * 22 21 20
42 42 H 1.09007 * 113.61470 * 105.47189 * 23 4 3
43 43 H 1.08994 * 113.62037 * 334.56813 * 23 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4309 1.4602 0.0006
5 1 3.9278 0.5457 0.3246
6 6 4.0029 2.0462 -1.3010
7 6 4.9900 2.8313 -0.4212
8 1 5.9147 2.2932 -0.2128
9 7 5.2212 4.2036 -0.8794
10 6 6.3942 4.5330 -1.4554
11 8 7.2583 3.6934 -1.5948
12 6 6.6324 5.9446 -1.9262
13 8 7.9386 6.0423 -2.4974
14 6 8.3143 7.2584 -2.9736
15 6 9.5692 7.4250 -3.5408
16 6 9.9490 8.6625 -4.0238
17 6 11.3119 8.8439 -4.6407
18 8 12.3174 8.5258 -3.6764
19 14 11.5151 10.6130 -5.1883
20 6 9.0798 9.7343 -3.9416
21 6 7.8286 9.5711 -3.3756
22 6 7.4441 8.3361 -2.8914
23 6 3.9483 2.7253 0.7051
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 1.8934 -0.5138 -0.8900
28 1 1.8933 -0.5139 0.8899
29 1 3.2993 2.6802 -1.8406
30 1 4.4822 1.3047 -1.9401
31 1 4.5300 4.8750 -0.7681
32 1 6.5531 6.6279 -1.0806
33 1 5.8872 6.2077 -2.6770
34 1 10.2504 6.5890 -3.6008
35 1 11.4120 8.1830 -5.5016
36 1 12.2883 9.0759 -2.8817
37 1 11.3493 11.5259 -4.0289
38 1 12.8551 10.8049 -5.7990
39 1 9.3787 10.7009 -4.3194
40 1 7.1516 10.4101 -3.3122
41 1 6.4668 8.2090 -2.4498
42 1 4.3836 2.5320 1.6857
43 1 3.2299 3.5449 0.7141
There are 57 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 57
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_10905468_4860298.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Mar 6 2021 13:19:50
Heat of formation + Delta-G solvation = -91.719669 kcal
Electronic energy + Delta-G solvation = -24254.099191 eV
Core-core repulsion = 20460.565113 eV
Total energy + Delta-G solvation = -3793.534078 eV
No. of doubly occupied orbitals = 57
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 308.150 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.66473 -41.04210 -39.96053 -38.96502 -37.56842 -37.30406 -34.50285 -32.49021
-31.90507 -31.55269 -29.36053 -26.86683 -26.80504 -25.14328 -23.70917 -23.67648
-22.57631 -21.66704 -20.96997 -19.38520 -18.51459 -18.37888 -17.65790 -17.47417
-17.26862 -16.95595 -16.69708 -16.49565 -16.27082 -16.15053 -15.56439 -15.40402
-15.05565 -14.74841 -14.51184 -14.15658 -14.07020 -13.97092 -13.54976 -13.46821
-13.43664 -13.00699 -12.81501 -12.61734 -12.49308 -12.17942 -12.12547 -12.03450
-11.96155 -11.79972 -11.61381 -11.03332 -10.69291 -10.44771 -10.19125 -9.93298
-9.29406 -4.91040 0.20088 0.38719 1.27140 1.36775 1.46127 1.62011
1.96629 2.49565 2.66262 2.83410 3.37490 3.39759 3.49087 3.53646
3.65509 3.76228 3.82674 3.85981 3.99058 4.06396 4.12612 4.16971
4.22744 4.24682 4.36215 4.38568 4.48180 4.54359 4.63538 4.66712
4.70042 4.80879 4.91046 4.93951 4.98126 4.99778 5.02721 5.24144
5.25850 5.36682 5.40151 5.44507 5.69012 6.24750 6.27932 6.43139
6.45596 7.06405
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.049 3.951
3 O -0.390 6.390
4 C 0.062 3.938
5 H 0.100 0.900
6 C -0.166 4.166
7 C 0.122 3.878
8 H 0.102 0.898
9 N -0.697 5.697
10 C 0.513 3.487
11 O -0.574 6.574
12 C 0.038 3.962
13 O -0.324 6.324
14 C 0.113 3.887
15 C -0.150 4.150
16 C -0.082 4.082
17 C -0.095 4.095
18 O -0.551 6.551
19 Si 0.786 3.214
20 C -0.157 4.157
21 C -0.070 4.070
22 C -0.202 4.202
23 C -0.130 4.130
24 H 0.059 0.941
25 H 0.057 0.943
26 H 0.084 0.916
27 H 0.052 0.948
28 H 0.058 0.942
29 H 0.096 0.904
30 H 0.067 0.933
31 H 0.422 0.578
32 H 0.126 0.874
33 H 0.126 0.874
34 H 0.111 0.889
35 H 0.119 0.881
36 H 0.386 0.614
37 H -0.277 1.277
38 H -0.305 1.305
39 H 0.150 0.850
40 H 0.163 0.837
41 H 0.161 0.839
42 H 0.090 0.910
43 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.335 4.174 1.040 9.380
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.027 4.027
3 O -0.309 6.309
4 C 0.003 3.997
5 H 0.118 0.882
6 C -0.205 4.205
7 C 0.017 3.983
8 H 0.120 0.880
9 N -0.350 5.350
10 C 0.300 3.700
11 O -0.452 6.452
12 C -0.040 4.040
13 O -0.237 6.237
14 C 0.068 3.932
15 C -0.169 4.169
16 C -0.083 4.083
17 C -0.203 4.203
18 O -0.360 6.360
19 Si 0.690 3.310
20 C -0.174 4.174
21 C -0.088 4.088
22 C -0.220 4.220
23 C -0.168 4.168
24 H 0.079 0.921
25 H 0.076 0.924
26 H 0.103 0.897
27 H 0.070 0.930
28 H 0.076 0.924
29 H 0.115 0.885
30 H 0.085 0.915
31 H 0.260 0.740
32 H 0.144 0.856
33 H 0.144 0.856
34 H 0.129 0.871
35 H 0.137 0.863
36 H 0.235 0.765
37 H -0.203 1.203
38 H -0.234 1.234
39 H 0.167 0.833
40 H 0.181 0.819
41 H 0.178 0.822
42 H 0.109 0.891
43 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -7.147 3.826 0.601 8.129
hybrid contribution 0.458 -0.672 1.136 1.397
sum -6.689 3.154 1.736 7.597
Atomic orbital electron populations
1.21772 0.93256 1.03200 1.02697 1.22678 0.96117 0.83174 1.00740
1.87917 1.20758 1.27582 1.94653 1.23486 0.81210 0.98643 0.96330
0.88224 1.23994 0.98370 1.00208 0.97957 1.22168 0.97735 0.82611
0.95791 0.87995 1.45605 1.16439 1.12429 1.60576 1.20615 0.82130
0.89998 0.77267 1.90761 1.45478 1.52597 1.56364 1.22731 0.84884
0.94665 1.01676 1.86123 1.33732 1.29659 1.74195 1.19207 0.94399
0.84382 0.95245 1.20290 0.94899 0.98341 1.03342 1.20137 0.96677
0.92864 0.98582 1.25482 0.84754 1.15699 0.94327 1.86577 1.53981
1.62692 1.32709 0.93879 0.82530 0.71066 0.83538 1.21220 0.95068
0.98522 1.02598 1.21337 0.95846 0.97318 0.94288 1.21638 1.01238
0.92812 1.06357 1.23561 0.96742 0.98358 0.98148 0.92145 0.92371
0.89710 0.92952 0.92400 0.88550 0.91451 0.73955 0.85611 0.85596
0.87066 0.86282 0.76463 1.20274 1.23358 0.83310 0.81916 0.82189
0.89127 0.87443
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 0.34 10.28 71.98 0.74 1.08 16
2 C 0.05 -0.06 6.50 71.98 0.47 0.41 16
3 O -0.39 -0.67 10.35 -148.98 -1.54 -2.22 16
4 C 0.06 -0.10 4.31 31.11 0.13 0.03 16
5 H 0.10 -0.34 7.87 -2.38 -0.02 -0.36 16
6 C -0.17 0.14 7.71 31.12 0.24 0.38 16
7 C 0.12 -0.14 4.24 45.52 0.19 0.05 16
8 H 0.10 0.32 7.46 -2.39 -0.02 0.30 16
9 N -0.70 2.31 5.35 -440.02 -2.36 -0.04 16
10 C 0.51 1.87 7.91 87.66 0.69 2.56 16
11 O -0.57 -8.91 16.10 16.00 0.26 -8.65 16
12 C 0.04 -0.09 5.22 71.24 0.37 0.28 16
13 O -0.32 -2.44 9.67 -73.36 -0.71 -3.15 16
14 C 0.11 0.53 6.69 22.51 0.15 0.68 16
15 C -0.15 -1.04 9.55 22.37 0.21 -0.82 16
16 C -0.08 -0.20 5.39 -19.88 -0.11 -0.30 16
17 C -0.10 -0.18 2.82 71.23 0.20 0.02 16
18 O -0.55 -3.19 12.77 -148.98 -1.90 -5.10 16
19 Si 0.79 -1.41 29.78 68.60 2.04 0.63 16
20 C -0.16 0.33 8.67 22.28 0.19 0.52 16
21 C -0.07 0.30 10.04 22.25 0.22 0.52 16
22 C -0.20 0.50 9.04 22.36 0.20 0.70 16
23 C -0.13 0.57 7.66 31.12 0.24 0.80 16
24 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16
25 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16
26 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16
27 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16
28 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16
29 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16
30 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16
31 H 0.42 -4.54 8.73 -92.71 -0.81 -5.35 16
32 H 0.13 -1.12 7.66 -2.39 -0.02 -1.14 16
33 H 0.13 -1.12 7.67 -2.38 -0.02 -1.13 16
34 H 0.11 1.17 8.06 -2.91 -0.02 1.15 16
35 H 0.12 0.15 7.96 -2.39 -0.02 0.14 16
36 H 0.39 -0.13 8.70 -74.06 -0.64 -0.77 16
37 H -0.28 -0.26 7.11 99.48 0.71 0.44 16
38 H -0.31 -1.90 7.11 99.48 0.71 -1.19 16
39 H 0.15 -0.99 4.87 -2.91 -0.01 -1.00 16
40 H 0.16 -1.72 8.06 -2.91 -0.02 -1.74 16
41 H 0.16 -1.51 6.30 -2.91 -0.02 -1.53 16
42 H 0.09 -0.49 8.14 -2.38 -0.02 -0.51 16
43 H 0.11 -0.65 8.12 -2.39 -0.02 -0.67 16
Total: 0.00 -25.54 360.85 -0.44 -25.98
By element:
Atomic # 1 Polarization: -13.98 SS G_CDS: -0.39 Total: -14.37 kcal
Atomic # 6 Polarization: 2.76 SS G_CDS: 4.15 Total: 6.92 kcal
Atomic # 7 Polarization: 2.31 SS G_CDS: -2.36 Total: -0.04 kcal
Atomic # 8 Polarization: -15.22 SS G_CDS: -3.90 Total: -19.11 kcal
Atomic # 14 Polarization: -1.41 SS G_CDS: 2.04 Total: 0.63 kcal
Total: -25.54 -0.44 -25.98 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_10905468_4860298.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.740 kcal
(2) G-P(sol) polarization free energy of solvation -25.540 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.280 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.440 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.980 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.720 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds