Wall clock time and date at job start Sat Mar 6 2021 20:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 C 1.53001 * 109.46964 * 240.00201 * 2 1 3 5 5 Si 1.86296 * 109.47312 * 119.99990 * 2 1 3 6 6 C 1.86295 * 109.47284 * 300.00181 * 5 2 1 7 7 C 1.86298 * 109.47161 * 180.02562 * 5 2 1 8 8 O 1.63099 * 109.47107 * 60.00187 * 5 2 1 9 9 C 1.42900 * 113.99942 * 180.02562 * 8 5 2 10 10 C 1.53044 * 109.49771 * 150.00018 * 9 8 5 11 11 C 1.53043 * 109.53679 * 181.31109 * 10 9 8 12 12 C 1.53181 * 109.31656 * 298.63814 * 11 10 9 13 13 N 1.46929 * 108.78172 * 54.63154 * 12 11 10 14 14 C 1.34777 * 120.63202 * 126.36724 * 13 12 11 15 15 O 1.21615 * 119.99957 * 186.31693 * 14 13 12 16 16 C 1.47380 * 119.99871 * 6.31176 * 14 13 12 17 17 C 1.36412 * 127.19125 * 206.68285 * 16 14 13 18 18 O 1.33656 * 108.39812 * 180.02562 * 17 16 14 19 19 C 1.34224 * 110.90537 * 0.02562 * 18 17 16 20 20 C 1.50694 * 125.43513 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.47592 * 120.02459 * 20 19 18 22 22 Si 1.86298 * 109.47088 * 0.02562 * 20 19 18 23 23 H 1.48497 * 109.47201 * 60.00728 * 22 20 19 24 24 H 1.48510 * 109.46975 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47468 * 299.99880 * 22 20 19 26 26 C 1.34173 * 109.12247 * 0.26218 * 19 18 17 27 27 C 1.46932 * 118.73490 * 306.64840 * 13 12 11 28 28 H 1.08998 * 109.47470 * 299.99464 * 1 2 3 29 29 H 1.08994 * 109.47230 * 60.00281 * 1 2 3 30 30 H 1.09000 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47149 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46945 * 300.00201 * 3 2 1 33 33 H 1.08998 * 109.46580 * 59.99990 * 3 2 1 34 34 H 1.09000 * 109.47202 * 299.99719 * 4 2 1 35 35 H 1.09000 * 109.46913 * 59.99962 * 4 2 1 36 36 H 1.08999 * 109.46791 * 179.97438 * 4 2 1 37 37 H 1.09003 * 109.47295 * 180.02562 * 6 5 2 38 38 H 1.09000 * 109.47067 * 299.99969 * 6 5 2 39 39 H 1.09003 * 109.47617 * 59.99927 * 6 5 2 40 40 H 1.09005 * 109.47141 * 300.00251 * 7 5 2 41 41 H 1.09000 * 109.47117 * 60.00076 * 7 5 2 42 42 H 1.09003 * 109.47291 * 179.97438 * 7 5 2 43 43 H 1.08995 * 109.50383 * 29.93456 * 9 8 5 44 44 H 1.09005 * 109.46039 * 61.29573 * 10 9 8 45 45 H 1.08997 * 109.46149 * 301.33580 * 10 9 8 46 46 H 1.09003 * 109.49429 * 178.67862 * 11 10 9 47 47 H 1.09001 * 109.49338 * 58.58824 * 11 10 9 48 48 H 1.09007 * 109.58855 * 294.84756 * 12 11 10 49 49 H 1.09002 * 109.70701 * 174.49267 * 12 11 10 50 50 H 1.07999 * 125.80276 * 0.04216 * 17 16 14 51 51 H 1.09002 * 109.46768 * 240.02206 * 20 19 18 52 52 H 0.96704 * 113.99612 * 299.99952 * 21 20 19 53 53 H 1.08006 * 127.02172 * 179.72972 * 26 19 18 54 54 H 1.09000 * 109.58426 * 173.13856 * 27 13 12 55 55 H 1.09000 * 109.58530 * 293.56207 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0140 -0.8775 1.5214 8 8 1.6074 -2.4159 1.5211 9 6 2.0287 -3.1813 2.6519 10 6 0.9703 -4.2381 2.9763 11 6 1.4052 -5.0370 4.2072 12 6 2.7262 -5.7519 3.9065 13 7 3.7094 -4.7584 3.4536 14 6 4.9116 -4.6586 4.0547 15 8 5.6715 -3.7596 3.7490 16 6 5.3052 -5.6388 5.0824 17 6 6.1796 -5.4480 6.1120 18 8 6.2588 -6.5826 6.8139 19 6 5.4653 -7.5283 6.2869 20 6 5.3036 -8.9290 6.8186 21 8 3.9364 -9.1499 7.1710 22 14 6.3765 -9.1489 8.3256 23 1 5.9704 -8.1736 9.3691 24 1 6.2176 -10.5295 8.8492 25 1 7.7973 -8.9195 7.9596 26 6 4.8432 -7.0289 5.2081 27 6 3.3546 -3.8716 2.3371 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.8938 -0.5136 3.9322 38 1 1.8934 1.0276 3.0422 39 1 0.4400 -0.0001 3.0423 40 1 4.3777 -1.3910 0.6314 41 1 4.3770 0.1503 1.5217 42 1 4.3774 -1.3909 2.4116 43 1 2.1589 -2.5216 3.5097 44 1 0.8580 -4.9122 2.1271 45 1 0.0181 -3.7482 3.1792 46 1 0.6400 -5.7738 4.4517 47 1 1.5417 -4.3600 5.0506 48 1 2.5700 -6.4944 3.1238 49 1 3.0918 -6.2431 4.8083 50 1 6.7164 -4.5352 6.3240 51 1 5.6016 -9.6450 6.0526 52 1 3.6028 -8.5469 7.8493 53 1 4.1438 -7.5424 4.5649 54 1 4.1336 -3.1207 2.2052 55 1 3.2507 -4.4576 1.4239 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10954526_13456056.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:15:42 Heat of formation + Delta-G solvation = -136.010186 kcal Electronic energy + Delta-G solvation = -33272.390606 eV Core-core repulsion = 29013.880128 eV Total energy + Delta-G solvation = -4258.510478 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.198 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.77987 -41.26019 -39.15203 -37.94036 -37.01382 -36.85193 -34.27805 -33.35257 -31.78425 -31.05971 -29.35212 -29.14933 -27.88871 -27.49193 -27.07474 -26.53477 -24.40646 -23.90884 -22.40054 -21.54078 -20.42538 -20.01638 -18.85382 -18.23296 -17.82433 -17.68524 -17.35012 -17.06632 -16.61284 -16.06123 -15.99688 -15.72487 -15.65614 -15.42885 -15.02238 -14.86055 -14.75915 -14.66577 -14.40823 -14.24202 -14.10041 -13.96092 -13.77938 -13.62452 -13.51732 -13.41614 -13.19829 -13.04707 -12.95164 -12.92728 -12.78600 -12.41639 -12.26713 -12.21516 -12.07162 -12.02800 -11.92955 -11.76206 -11.66614 -11.60667 -11.29759 -11.10597 -10.80118 -10.53324 -10.50820 -10.09913 -9.85229 -9.65246 0.28223 0.81949 1.10756 1.29158 1.44447 1.49526 1.73314 1.78606 1.90059 1.95636 2.01762 2.07988 2.42266 3.25835 3.43200 3.60203 3.74959 3.79865 3.89514 3.95302 3.98084 4.09957 4.10860 4.12544 4.19321 4.40852 4.44144 4.49619 4.52505 4.55327 4.62273 4.64571 4.68790 4.70035 4.72258 4.80293 4.81158 4.82973 4.88469 4.90312 4.98878 5.00306 5.07764 5.08063 5.08750 5.16278 5.18136 5.21025 5.32817 5.38583 5.39244 5.43782 5.53128 5.57310 5.63892 5.85777 6.23631 6.62092 6.96884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.375 4.375 3 C -0.142 4.142 4 C -0.138 4.138 5 Si 1.308 2.692 6 C -0.516 4.516 7 C -0.522 4.522 8 O -0.620 6.620 9 C 0.105 3.895 10 C -0.121 4.121 11 C -0.131 4.131 12 C 0.082 3.918 13 N -0.596 5.596 14 C 0.586 3.414 15 O -0.581 6.581 16 C -0.261 4.261 17 C 0.062 3.938 18 O -0.178 6.178 19 C -0.057 4.057 20 C -0.029 4.029 21 O -0.535 6.535 22 Si 0.985 3.015 23 H -0.261 1.261 24 H -0.257 1.257 25 H -0.269 1.269 26 C -0.150 4.150 27 C 0.070 3.930 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.115 0.885 50 H 0.233 0.767 51 H 0.154 0.846 52 H 0.394 0.606 53 H 0.184 0.816 54 H 0.091 0.909 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 -3.533 2.794 5.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.419 4.419 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.438 2.562 6 C -0.617 4.617 7 C -0.623 4.623 8 O -0.578 6.578 9 C 0.047 3.953 10 C -0.159 4.159 11 C -0.169 4.169 12 C -0.039 4.039 13 N -0.329 5.329 14 C 0.377 3.623 15 O -0.463 6.463 16 C -0.266 4.266 17 C -0.009 4.009 18 O -0.074 6.074 19 C -0.105 4.105 20 C -0.140 4.140 21 O -0.342 6.342 22 Si 0.809 3.191 23 H -0.185 1.185 24 H -0.181 1.181 25 H -0.194 1.194 26 C -0.169 4.169 27 C -0.053 4.053 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.127 0.873 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.132 0.868 50 H 0.249 0.751 51 H 0.171 0.829 52 H 0.245 0.755 53 H 0.201 0.799 54 H 0.109 0.891 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.721 -3.904 3.014 5.633 hybrid contribution 0.198 1.499 -0.316 1.544 sum -2.522 -2.406 2.698 4.408 Atomic orbital electron populations 1.21544 0.93746 1.02060 1.02023 1.25785 1.00744 1.02816 1.12515 1.21618 1.01142 0.94767 1.02419 1.21550 1.00844 1.00224 0.96858 0.76386 0.61797 0.53328 0.64713 1.27078 1.07225 1.09753 1.17681 1.27399 1.26198 1.04690 1.03968 1.85413 1.78424 1.46182 1.47812 1.21802 0.93568 0.93532 0.86407 1.21732 0.98070 0.97014 0.99035 1.21958 0.97167 1.00339 0.97445 1.22620 0.88122 0.90648 1.02529 1.47868 1.14790 1.36526 1.33755 1.17623 0.81143 0.83200 0.80361 1.90795 1.53242 1.36486 1.65786 1.21352 1.07088 0.96515 1.01622 1.24765 0.96590 0.89070 0.90467 1.83759 1.54538 1.19746 1.49356 1.23133 0.96761 0.92983 0.97598 1.24335 0.91063 0.88773 1.09867 1.86561 1.24138 1.60604 1.62891 0.85100 0.77597 0.80353 0.76049 1.18457 1.18095 1.19380 1.22919 1.02918 0.92153 0.98938 1.22395 0.98011 0.95227 0.89671 0.92073 0.92982 0.92177 0.92175 0.92654 0.91812 0.92212 0.92921 0.92499 0.91791 0.90292 0.90438 0.91221 0.90506 0.92147 0.92167 0.90001 0.90014 0.87281 0.91646 0.89233 0.86763 0.75064 0.82863 0.75549 0.79862 0.89079 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.07 7.85 71.98 0.56 0.50 16 2 C -0.37 -0.25 0.53 -10.79 -0.01 -0.25 16 3 C -0.14 -0.02 7.85 71.98 0.56 0.55 16 4 C -0.14 -0.20 7.85 71.98 0.56 0.37 16 5 Si 1.31 0.46 8.06 68.60 0.55 1.01 16 6 C -0.52 -0.31 8.56 113.37 0.97 0.66 16 7 C -0.52 -1.97 7.53 113.37 0.85 -1.11 16 8 O -0.62 -0.97 8.28 -148.98 -1.23 -2.20 16 9 C 0.10 0.08 2.29 30.53 0.07 0.14 16 10 C -0.12 0.40 5.54 30.62 0.17 0.56 16 11 C -0.13 0.80 6.08 30.67 0.19 0.99 16 12 C 0.08 -0.38 5.30 86.36 0.46 0.08 16 13 N -0.60 -1.32 2.98 -823.63 -2.45 -3.78 16 14 C 0.59 4.14 7.65 86.65 0.66 4.81 16 15 O -0.58 -8.51 16.43 -4.08 -0.07 -8.58 16 16 C -0.26 -0.64 5.72 -18.99 -0.11 -0.75 16 17 C 0.06 0.03 11.99 67.39 0.81 0.84 16 18 O -0.18 -0.01 8.89 4.35 0.04 0.03 16 19 C -0.06 0.14 6.20 24.76 0.15 0.30 16 20 C -0.03 0.18 2.97 71.23 0.21 0.39 16 21 O -0.53 3.45 12.87 -148.98 -1.92 1.53 16 22 Si 0.99 -3.48 27.37 68.60 1.88 -1.60 16 23 H -0.26 0.43 7.11 99.48 0.71 1.14 16 24 H -0.26 0.41 7.11 99.48 0.71 1.12 16 25 H -0.27 -0.05 7.11 99.48 0.71 0.66 16 26 C -0.15 0.34 8.53 23.65 0.20 0.54 16 27 C 0.07 0.22 5.75 86.22 0.50 0.72 16 28 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 29 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.06 0.03 7.97 -2.39 -0.02 0.01 16 31 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 32 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 34 H 0.06 0.09 7.97 -2.39 -0.02 0.07 16 35 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.06 0.05 7.79 -2.39 -0.02 0.03 16 37 H 0.06 0.07 7.10 -2.39 -0.02 0.06 16 38 H 0.08 -0.01 7.79 -2.39 -0.02 -0.02 16 39 H 0.08 -0.01 7.79 -2.39 -0.02 -0.03 16 40 H 0.07 0.29 7.79 -2.38 -0.02 0.27 16 41 H 0.08 0.21 7.79 -2.39 -0.02 0.19 16 42 H 0.06 0.42 6.33 -2.39 -0.02 0.40 16 43 H 0.06 0.05 6.15 -2.39 -0.01 0.04 16 44 H 0.08 -0.30 8.14 -2.38 -0.02 -0.32 16 45 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.11 -1.09 8.14 -2.39 -0.02 -1.11 16 47 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.09 -0.65 8.14 -2.38 -0.02 -0.67 16 49 H 0.11 -0.71 4.02 -2.39 -0.01 -0.72 16 50 H 0.23 -0.81 8.06 -2.91 -0.02 -0.83 16 51 H 0.15 -1.41 7.96 -2.39 -0.02 -1.43 16 52 H 0.39 -4.92 8.70 -74.05 -0.64 -5.57 16 53 H 0.18 -1.15 6.52 -2.91 -0.02 -1.17 16 54 H 0.09 0.64 3.78 -2.39 -0.01 0.63 16 55 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 Total: 0.00 -16.80 424.56 4.61 -12.19 By element: Atomic # 1 Polarization: -8.91 SS G_CDS: 0.99 Total: -7.92 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 6.82 Total: 9.32 kcal Atomic # 7 Polarization: -1.32 SS G_CDS: -2.45 Total: -3.78 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -3.18 Total: -9.22 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.43 Total: -0.59 kcal Total: -16.80 4.61 -12.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10954526_13456056.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.824 kcal (2) G-P(sol) polarization free energy of solvation -16.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds