Wall clock time and date at job start Sat Mar 6 2021 20:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47078 * 2 1 4 4 C 1.53000 * 109.47235 * 240.00472 * 2 1 3 5 5 Si 1.86299 * 109.47275 * 120.00120 * 2 1 3 6 6 C 1.86293 * 109.47173 * 300.00354 * 5 2 1 7 7 C 1.86298 * 109.47176 * 180.02562 * 5 2 1 8 8 O 1.63100 * 109.47094 * 60.00220 * 5 2 1 9 9 C 1.42898 * 114.00366 * 179.97438 * 8 5 2 10 10 C 1.53045 * 109.49860 * 149.99754 * 9 8 5 11 11 C 1.53037 * 109.53427 * 181.31953 * 10 9 8 12 12 C 1.53194 * 109.31422 * 298.63285 * 11 10 9 13 13 N 1.46928 * 108.77618 * 54.63933 * 12 11 10 14 14 C 1.34771 * 120.63440 * 126.36678 * 13 12 11 15 15 O 1.21635 * 120.00178 * 186.10270 * 14 13 12 16 16 C 1.47188 * 119.99794 * 6.10230 * 14 13 12 17 17 C 1.36014 * 123.46435 * 214.24334 * 16 14 13 18 18 S 1.70443 * 110.82088 * 180.02562 * 17 16 14 19 19 C 1.75507 * 92.44377 * 0.02562 * 18 17 16 20 20 C 1.50698 * 124.71032 * 180.02562 * 19 18 17 21 21 O 1.42893 * 109.47179 * 120.02708 * 20 19 18 22 22 Si 1.86298 * 109.47238 * 0.02562 * 20 19 18 23 23 H 1.48501 * 109.47263 * 179.97438 * 22 20 19 24 24 H 1.48501 * 109.47106 * 60.00105 * 22 20 19 25 25 H 1.48500 * 109.47551 * 300.00223 * 22 20 19 26 26 C 1.32769 * 110.57577 * 0.26333 * 19 18 17 27 27 C 1.46929 * 118.73314 * 306.64513 * 13 12 11 28 28 H 1.08989 * 109.46889 * 299.99635 * 1 2 3 29 29 H 1.09000 * 109.46721 * 60.00060 * 1 2 3 30 30 H 1.08999 * 109.46560 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46937 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47123 * 299.99997 * 3 2 1 33 33 H 1.08996 * 109.46561 * 60.00424 * 3 2 1 34 34 H 1.09005 * 109.46838 * 300.00008 * 4 2 1 35 35 H 1.08994 * 109.47453 * 59.99705 * 4 2 1 36 36 H 1.09004 * 109.47221 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.47250 * 180.02562 * 6 5 2 38 38 H 1.09005 * 109.46867 * 299.99595 * 6 5 2 39 39 H 1.08995 * 109.47496 * 59.99711 * 6 5 2 40 40 H 1.09003 * 109.47456 * 299.99994 * 7 5 2 41 41 H 1.08997 * 109.47501 * 59.99926 * 7 5 2 42 42 H 1.09004 * 109.47364 * 180.02562 * 7 5 2 43 43 H 1.09002 * 109.49371 * 29.93466 * 9 8 5 44 44 H 1.09003 * 109.45559 * 61.29999 * 10 9 8 45 45 H 1.08998 * 109.46011 * 301.33679 * 10 9 8 46 46 H 1.09002 * 109.49720 * 178.68416 * 11 10 9 47 47 H 1.08994 * 109.50271 * 58.58560 * 11 10 9 48 48 H 1.08995 * 109.58668 * 294.85222 * 12 11 10 49 49 H 1.08995 * 109.70670 * 174.49369 * 12 11 10 50 50 H 1.08004 * 124.58779 * 0.07643 * 17 16 14 51 51 H 1.09009 * 109.47007 * 240.02434 * 20 19 18 52 52 H 0.96705 * 114.00124 * 299.99438 * 21 20 19 53 53 H 1.07997 * 123.45701 * 179.72622 * 26 19 18 54 54 H 1.09008 * 109.58399 * 173.14412 * 27 13 12 55 55 H 1.09000 * 109.58637 * 293.56549 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 14 2.1511 -0.8782 1.5211 6 6 1.5300 -0.0002 3.0422 7 6 4.0141 -0.8776 1.5215 8 8 1.6075 -2.4160 1.5210 9 6 2.0296 -3.1818 2.6512 10 6 0.9714 -4.2387 2.9762 11 6 1.4073 -5.0378 4.2064 12 6 2.7280 -5.7528 3.9044 13 7 3.7109 -4.7592 3.4512 14 6 4.9135 -4.6595 4.0512 15 8 5.6748 -3.7626 3.7424 16 6 5.3056 -5.6361 5.0803 17 6 6.0718 -5.3219 6.1593 18 16 6.3292 -6.6924 7.1393 19 6 5.3852 -7.7224 6.0770 20 6 5.1389 -9.1918 6.3029 21 8 3.7341 -9.4275 6.4160 22 14 5.9872 -9.7298 7.8719 23 1 5.7440 -11.1777 8.0948 24 1 5.4461 -8.9554 9.0177 25 1 7.4471 -9.4849 7.7544 26 6 4.9225 -7.0282 5.0442 27 6 3.3552 -3.8720 2.3352 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1301 -0.7215 -1.2491 37 1 1.8938 -0.5137 3.9322 38 1 1.8934 1.0275 3.0423 39 1 0.4401 -0.0002 3.0422 40 1 4.3778 -1.3911 0.6315 41 1 4.3771 0.1502 1.5217 42 1 4.3775 -1.3918 2.4112 43 1 2.1605 -2.5223 3.5091 44 1 0.8585 -4.9125 2.1268 45 1 0.0194 -3.7487 3.1800 46 1 0.6424 -5.7747 4.4513 47 1 1.5445 -4.3612 5.0499 48 1 2.5711 -6.4949 3.1217 49 1 3.0944 -6.2442 4.8057 50 1 6.4632 -4.3370 6.3674 51 1 5.5361 -9.7603 5.4618 52 1 3.3130 -8.9522 7.1455 53 1 4.3187 -7.4594 4.2594 54 1 4.1342 -3.1210 2.2029 55 1 3.2505 -4.4576 1.4219 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10954526_6894386.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:50:39 Heat of formation + Delta-G solvation = -123.773686 kcal Electronic energy + Delta-G solvation = -32966.690626 eV Core-core repulsion = 28832.781441 eV Total energy + Delta-G solvation = -4133.909185 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 385.170 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.65003 -39.47883 -38.73204 -37.16547 -36.90281 -36.84142 -33.46452 -31.85083 -31.24264 -29.36886 -29.15332 -27.89260 -27.49590 -27.13126 -26.96940 -24.94853 -23.83015 -22.13758 -21.17910 -20.42258 -20.02870 -19.01470 -18.08464 -17.87994 -17.32953 -17.24464 -16.70197 -16.26764 -16.04414 -15.84212 -15.70128 -15.40793 -15.29250 -14.91768 -14.75826 -14.67572 -14.38692 -14.28334 -14.19087 -14.05601 -13.94736 -13.73066 -13.64037 -13.53560 -13.42139 -13.19576 -13.05002 -12.95055 -12.92960 -12.59000 -12.41772 -12.36343 -12.26298 -12.19691 -12.02416 -11.92976 -11.78439 -11.67101 -11.65630 -11.57312 -11.14100 -11.08079 -10.53009 -10.51571 -10.10224 -9.99347 -9.76330 -9.45578 -0.31669 0.32003 0.64372 0.85514 1.14068 1.31426 1.43414 1.53035 1.73110 1.88930 1.93077 2.01117 2.05160 2.42018 3.33607 3.54583 3.67901 3.76123 3.81990 3.92251 3.97477 4.02398 4.10039 4.10784 4.13176 4.29691 4.42992 4.44524 4.50545 4.58490 4.61742 4.63410 4.67683 4.69307 4.70681 4.76750 4.80363 4.81572 4.83099 4.89337 4.91473 4.98798 5.03159 5.08046 5.08410 5.08748 5.14444 5.18622 5.20932 5.32674 5.39031 5.39460 5.43766 5.52659 5.56929 5.64119 6.21767 6.70724 6.95685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.375 4.375 3 C -0.142 4.142 4 C -0.138 4.138 5 Si 1.308 2.692 6 C -0.516 4.516 7 C -0.523 4.523 8 O -0.619 6.619 9 C 0.104 3.896 10 C -0.121 4.121 11 C -0.131 4.131 12 C 0.086 3.914 13 N -0.596 5.596 14 C 0.575 3.425 15 O -0.580 6.580 16 C -0.174 4.174 17 C -0.185 4.185 18 S 0.197 5.803 19 C -0.235 4.235 20 C -0.028 4.028 21 O -0.540 6.540 22 Si 0.907 3.093 23 H -0.241 1.241 24 H -0.232 1.232 25 H -0.244 1.244 26 C -0.079 4.079 27 C 0.069 3.931 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.110 0.890 47 H 0.064 0.936 48 H 0.093 0.907 49 H 0.111 0.889 50 H 0.172 0.828 51 H 0.138 0.862 52 H 0.392 0.608 53 H 0.173 0.827 54 H 0.090 0.910 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 -4.114 3.365 6.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.418 4.418 3 C -0.200 4.200 4 C -0.195 4.195 5 Si 1.438 2.562 6 C -0.618 4.618 7 C -0.623 4.623 8 O -0.578 6.578 9 C 0.047 3.953 10 C -0.158 4.158 11 C -0.169 4.169 12 C -0.036 4.036 13 N -0.329 5.329 14 C 0.364 3.636 15 O -0.462 6.462 16 C -0.192 4.192 17 C -0.324 4.324 18 S 0.464 5.536 19 C -0.352 4.352 20 C -0.142 4.142 21 O -0.347 6.347 22 Si 0.728 3.272 23 H -0.164 1.164 24 H -0.155 1.155 25 H -0.168 1.168 26 C -0.108 4.108 27 C -0.054 4.054 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.128 0.872 47 H 0.083 0.917 48 H 0.111 0.889 49 H 0.129 0.871 50 H 0.189 0.811 51 H 0.156 0.844 52 H 0.242 0.758 53 H 0.190 0.810 54 H 0.108 0.892 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.152 -4.725 4.660 6.976 hybrid contribution -0.361 1.820 -1.369 2.306 sum -2.513 -2.905 3.291 5.058 Atomic orbital electron populations 1.21544 0.93706 1.02087 1.02028 1.25779 1.00771 1.02789 1.12483 1.21618 1.01120 0.94790 1.02426 1.21550 1.00825 1.00249 0.96851 0.76377 0.61703 0.53369 0.64729 1.27081 1.07255 1.09734 1.17681 1.27411 1.26315 1.04634 1.03932 1.85411 1.78366 1.46122 1.47855 1.21806 0.93600 0.93541 0.86387 1.21729 0.98023 0.96987 0.99068 1.21963 0.97167 1.00345 0.97446 1.22547 0.88066 0.90567 1.02371 1.47932 1.14720 1.36491 1.33751 1.18056 0.81264 0.83603 0.80702 1.90795 1.53224 1.36516 1.65623 1.20133 1.05978 0.94965 0.98095 1.25710 1.01586 1.05694 0.99376 1.83248 1.49157 0.96764 1.24463 1.24957 1.07575 1.01671 1.00973 1.24282 0.88120 0.89870 1.11882 1.86523 1.18864 1.72146 1.57191 0.86076 0.80615 0.83276 0.77201 1.16389 1.15509 1.16770 1.21299 1.00126 0.90109 0.99241 1.22404 0.97965 0.95258 0.89761 0.92082 0.92961 0.92136 0.92218 0.92620 0.91825 0.92175 0.92892 0.92534 0.91851 0.90321 0.90385 0.91207 0.90554 0.92262 0.92277 0.89881 0.90002 0.87172 0.91691 0.88927 0.87118 0.81093 0.84406 0.75844 0.80979 0.89205 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.07 7.85 71.98 0.56 0.49 16 2 C -0.37 -0.30 0.53 -10.79 -0.01 -0.31 16 3 C -0.14 -0.04 7.85 71.98 0.56 0.52 16 4 C -0.14 -0.21 7.85 71.98 0.56 0.36 16 5 Si 1.31 0.79 8.06 68.60 0.55 1.34 16 6 C -0.52 -0.47 8.56 113.37 0.97 0.50 16 7 C -0.52 -2.22 7.53 113.37 0.85 -1.37 16 8 O -0.62 -1.02 8.28 -148.98 -1.23 -2.25 16 9 C 0.10 0.09 2.29 30.53 0.07 0.16 16 10 C -0.12 0.41 5.54 30.62 0.17 0.58 16 11 C -0.13 0.82 6.08 30.67 0.19 1.00 16 12 C 0.09 -0.41 5.03 86.36 0.43 0.02 16 13 N -0.60 -1.37 2.98 -823.88 -2.45 -3.83 16 14 C 0.58 4.46 7.50 86.59 0.65 5.11 16 15 O -0.58 -9.31 16.37 -4.14 -0.07 -9.38 16 16 C -0.17 -0.52 5.30 -19.87 -0.11 -0.63 16 17 C -0.19 -0.38 10.68 67.30 0.72 0.34 16 18 S 0.20 -0.39 20.18 -56.49 -1.14 -1.53 16 19 C -0.23 0.83 5.68 24.51 0.14 0.97 16 20 C -0.03 0.17 2.95 71.24 0.21 0.38 16 21 O -0.54 3.35 12.85 -148.98 -1.91 1.44 16 22 Si 0.91 -4.11 26.19 68.60 1.80 -2.31 16 23 H -0.24 0.45 7.11 99.48 0.71 1.16 16 24 H -0.23 1.08 7.11 99.48 0.71 1.79 16 25 H -0.24 0.61 7.11 99.48 0.71 1.32 16 26 C -0.08 0.17 7.69 22.67 0.17 0.35 16 27 C 0.07 0.23 5.75 86.22 0.50 0.72 16 28 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 29 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.06 0.03 7.97 -2.39 -0.02 0.01 16 31 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 32 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 34 H 0.06 0.09 7.97 -2.38 -0.02 0.07 16 35 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.06 0.06 7.79 -2.39 -0.02 0.04 16 37 H 0.06 0.10 7.10 -2.39 -0.02 0.08 16 38 H 0.08 0.02 7.79 -2.38 -0.02 0.00 16 39 H 0.08 0.00 7.79 -2.39 -0.02 -0.02 16 40 H 0.07 0.32 7.79 -2.39 -0.02 0.30 16 41 H 0.08 0.25 7.79 -2.39 -0.02 0.23 16 42 H 0.06 0.45 6.33 -2.39 -0.02 0.43 16 43 H 0.06 0.07 6.15 -2.39 -0.01 0.05 16 44 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 45 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.11 -1.13 8.14 -2.39 -0.02 -1.15 16 47 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 49 H 0.11 -0.70 4.43 -2.39 -0.01 -0.71 16 50 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 51 H 0.14 -1.08 7.96 -2.38 -0.02 -1.10 16 52 H 0.39 -4.92 8.70 -74.05 -0.64 -5.56 16 53 H 0.17 -0.93 6.59 -2.91 -0.02 -0.95 16 54 H 0.09 0.66 3.78 -2.38 -0.01 0.66 16 55 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 Total: 0.00 -15.21 431.52 3.18 -12.03 By element: Atomic # 1 Polarization: -5.69 SS G_CDS: 0.99 Total: -4.70 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 6.66 Total: 9.20 kcal Atomic # 7 Polarization: -1.37 SS G_CDS: -2.45 Total: -3.83 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -3.22 Total: -10.19 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: 2.35 Total: -0.97 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -1.14 Total: -1.53 kcal Total: -15.21 3.18 -12.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10954526_6894386.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.746 kcal (2) G-P(sol) polarization free energy of solvation -15.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds