Wall clock time and date at job start Sat Mar 6 2021 15:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99820 * 2 1 4 4 O 1.20826 * 119.99946 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00017 * 179.97438 * 3 2 1 6 6 H 1.09006 * 112.85032 * 311.19818 * 5 3 2 7 7 C 1.53964 * 113.66718 * 82.43590 * 5 3 2 8 8 C 1.53781 * 87.01877 * 139.93564 * 7 5 3 9 9 H 1.09001 * 113.61611 * 89.22937 * 8 7 5 10 10 N 1.46506 * 113.61339 * 220.05206 * 8 7 5 11 11 C 1.34772 * 119.99630 * 254.13324 * 10 8 7 12 12 O 1.21287 * 120.00260 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99833 * 180.27210 * 11 10 8 14 14 C 1.52996 * 109.47308 * 294.72730 * 13 11 10 15 15 O 1.42906 * 109.46966 * 174.72684 * 13 11 10 16 16 C 1.35894 * 116.99718 * 204.92058 * 15 13 11 17 17 C 1.38736 * 120.05614 * 174.25962 * 16 15 13 18 18 C 1.38142 * 119.94300 * 179.69942 * 17 16 15 19 19 C 1.38268 * 120.05521 * 0.59063 * 18 17 16 20 20 C 1.50708 * 119.93925 * 179.69980 * 19 18 17 21 21 O 1.42905 * 109.46517 * 119.98391 * 20 19 18 22 22 Si 1.86294 * 109.47343 * 359.97438 * 20 19 18 23 23 C 1.38262 * 120.11528 * 359.68063 * 19 18 17 24 24 C 1.38151 * 120.05249 * 0.02583 * 23 19 18 25 25 C 1.53782 * 113.61733 * 179.97438 * 5 3 2 26 26 H 1.09000 * 109.46877 * 60.00808 * 1 2 3 27 27 H 1.09004 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47384 * 300.00612 * 1 2 3 29 29 H 1.08992 * 113.61083 * 25.41468 * 7 5 3 30 30 H 1.08996 * 113.66624 * 254.45807 * 7 5 3 31 31 H 0.96998 * 119.99765 * 74.13563 * 10 8 7 32 32 H 1.09000 * 109.46955 * 54.72880 * 13 11 10 33 33 H 1.09000 * 109.47015 * 60.00034 * 14 13 11 34 34 H 1.08999 * 109.47110 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.47235 * 299.99979 * 14 13 11 36 36 H 1.08001 * 120.02407 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.97110 * 180.26830 * 18 17 16 38 38 H 1.08996 * 109.47017 * 239.97280 * 20 19 18 39 39 H 0.96701 * 113.99796 * 299.99204 * 21 20 19 40 40 H 1.48499 * 109.99777 * 179.97438 * 22 20 19 41 41 H 1.48503 * 109.99866 * 301.31584 * 22 20 19 42 42 H 1.07994 * 119.97394 * 180.02562 * 23 19 18 43 43 H 1.07998 * 120.02823 * 180.02562 * 24 23 19 44 44 H 1.08998 * 113.61189 * 105.47115 * 25 5 3 45 45 H 1.08994 * 113.61203 * 334.57206 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0233 0.6365 0.7567 7 6 4.1937 1.1217 -1.3970 8 6 5.1814 2.2266 -0.9866 9 1 6.0816 1.8494 -0.5013 10 7 5.4709 3.1827 -2.0584 11 6 6.6576 3.1412 -2.6959 12 8 7.4857 2.3122 -2.3827 13 6 6.9577 4.1286 -3.7942 14 6 6.0125 3.8841 -4.9721 15 8 8.3099 3.9639 -4.2263 16 6 8.9109 5.0411 -4.7964 17 6 10.2566 4.9903 -5.1300 18 6 10.8637 6.0846 -5.7151 19 6 10.1343 7.2341 -5.9571 20 6 10.8010 8.4287 -6.5893 21 8 10.1473 8.7425 -7.8208 22 14 12.5925 8.0381 -6.9188 23 6 8.7945 7.2893 -5.6204 24 6 8.1812 6.1955 -5.0406 25 6 4.1077 2.7143 -0.0001 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.5270 1.4115 -2.2090 30 1 4.6658 0.1530 -1.5608 31 1 4.8084 3.8454 -2.3090 32 1 6.8169 5.1425 -3.4197 33 1 4.9811 4.0098 -4.6425 34 1 6.2299 4.5979 -5.7666 35 1 6.1533 2.8702 -5.3466 36 1 10.8279 4.0945 -4.9365 37 1 11.9102 6.0440 -5.9790 38 1 10.7333 9.2820 -5.9145 39 1 10.1684 8.0268 -8.4707 40 1 13.2609 9.2081 -7.5429 41 1 13.2757 7.6793 -5.6501 42 1 8.2269 8.1881 -5.8108 43 1 7.1345 6.2389 -4.7782 44 1 4.5104 3.0297 0.9624 45 1 3.4174 3.4402 -0.4297 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_10157680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:33:41 Heat of formation + Delta-G solvation = -127.620571 kcal Electronic energy + Delta-G solvation = -28205.586081 eV Core-core repulsion = 23963.586891 eV Total energy + Delta-G solvation = -4241.999191 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.09252 -41.67618 -40.73381 -39.49792 -38.76415 -37.44670 -37.13264 -34.94360 -33.03864 -32.05551 -31.37203 -29.37755 -27.16908 -26.85041 -26.59935 -25.31092 -24.14260 -22.81412 -22.15809 -21.53922 -20.66800 -19.52960 -18.98066 -18.49026 -18.16876 -17.96254 -17.44921 -17.13738 -16.84373 -16.45368 -16.27480 -16.21027 -15.91425 -15.66144 -15.47906 -15.15165 -14.74200 -14.49213 -14.34935 -14.32352 -14.24104 -13.74470 -13.61093 -13.46085 -13.37537 -13.34662 -13.01769 -12.88154 -12.56593 -12.34698 -12.24741 -12.11244 -12.01200 -11.86266 -11.83054 -11.67611 -11.44566 -10.92719 -10.41286 -10.22209 -10.04486 -9.21604 -4.99326 0.24499 0.32556 1.04293 1.33850 1.36438 1.42539 1.63606 1.76418 1.96686 2.50283 2.65650 3.21662 3.28119 3.44651 3.56674 3.61873 3.65516 3.72904 3.74370 3.82587 3.86772 3.92725 4.01096 4.25211 4.27555 4.27980 4.35146 4.46638 4.52637 4.55617 4.57274 4.61710 4.63441 4.67597 4.68216 4.81326 4.90960 4.99483 5.01997 5.09109 5.18717 5.29061 5.31823 5.40847 5.48481 5.67648 6.24146 6.41324 6.63479 6.79719 7.04299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.107 4.107 6 H 0.150 0.850 7 C -0.129 4.129 8 C 0.125 3.875 9 H 0.114 0.886 10 N -0.700 5.700 11 C 0.520 3.480 12 O -0.564 6.564 13 C 0.063 3.937 14 C -0.172 4.172 15 O -0.310 6.310 16 C 0.120 3.880 17 C -0.158 4.158 18 C -0.077 4.077 19 C -0.161 4.161 20 C -0.064 4.064 21 O -0.556 6.556 22 Si 0.768 3.232 23 C -0.057 4.057 24 C -0.208 4.208 25 C -0.117 4.117 26 H 0.062 0.938 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.419 0.581 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.136 0.864 37 H 0.148 0.852 38 H 0.107 0.893 39 H 0.395 0.605 40 H -0.300 1.300 41 H -0.288 1.288 42 H 0.138 0.862 43 H 0.153 0.847 44 H 0.099 0.901 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 -1.029 -1.444 4.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.126 4.126 6 H 0.167 0.833 7 C -0.168 4.168 8 C 0.020 3.980 9 H 0.132 0.868 10 N -0.353 5.353 11 C 0.306 3.694 12 O -0.441 6.441 13 C 0.004 3.996 14 C -0.229 4.229 15 O -0.224 6.224 16 C 0.075 3.925 17 C -0.177 4.177 18 C -0.094 4.094 19 C -0.162 4.162 20 C -0.175 4.175 21 O -0.364 6.364 22 Si 0.675 3.325 23 C -0.075 4.075 24 C -0.226 4.226 25 C -0.155 4.155 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.257 0.743 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.125 0.875 39 H 0.245 0.755 40 H -0.228 1.228 41 H -0.215 1.215 42 H 0.156 0.844 43 H 0.171 0.829 44 H 0.118 0.882 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.822 -0.772 -0.725 3.014 hybrid contribution -1.081 0.569 0.484 1.314 sum -3.903 -0.202 -0.240 3.915 Atomic orbital electron populations 1.23528 0.75006 1.05583 1.02501 1.86526 1.24796 1.33274 1.83467 1.23952 0.92444 0.81003 0.70980 1.90666 1.67844 1.37285 1.46709 1.22459 0.86006 1.01723 1.02426 0.83256 1.23459 0.97577 1.01115 0.94602 1.22437 0.97686 0.89799 0.88068 0.86779 1.45712 1.16618 1.36463 1.36500 1.20506 0.82025 0.84480 0.82422 1.90752 1.47957 1.39328 1.66081 1.22416 0.81931 1.00234 0.95062 1.22357 0.99588 1.04047 0.96952 1.86188 1.27407 1.34852 1.73917 1.19262 0.92744 0.86472 0.94063 1.20593 0.92306 1.00795 1.03998 1.20979 0.99891 0.91643 0.96936 1.20340 0.95491 0.96205 1.04121 1.25007 1.07695 0.97221 0.87555 1.86457 1.79872 1.45008 1.25015 0.93774 0.72376 0.83659 0.82688 1.20974 0.94009 0.98085 0.94467 1.21521 1.01704 0.93322 1.06084 1.23321 0.96361 0.94682 1.01134 0.91914 0.85511 0.91993 0.88770 0.89039 0.74294 0.85858 0.87539 0.89576 0.91936 0.84596 0.83487 0.87544 0.75503 1.22778 1.21544 0.84405 0.82927 0.88246 0.87962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.57 10.57 -51.44 -0.54 -1.12 16 3 C 0.47 0.84 7.49 71.23 0.53 1.37 16 4 O -0.54 -3.88 15.65 21.96 0.34 -3.54 16 5 C -0.11 0.46 4.26 -10.95 -0.05 0.41 16 6 H 0.15 -1.16 8.14 -2.38 -0.02 -1.18 16 7 C -0.13 0.58 7.44 31.18 0.23 0.82 16 8 C 0.12 -0.49 4.21 45.51 0.19 -0.30 16 9 H 0.11 -0.11 7.50 -2.39 -0.02 -0.13 16 10 N -0.70 3.16 5.33 -440.07 -2.34 0.82 16 11 C 0.52 1.29 7.18 87.66 0.63 1.92 16 12 O -0.56 -7.24 16.13 15.94 0.26 -6.99 16 13 C 0.06 -0.09 2.64 29.85 0.08 -0.01 16 14 C -0.17 1.04 9.13 71.98 0.66 1.70 16 15 O -0.31 -1.83 9.34 -73.37 -0.69 -2.52 16 16 C 0.12 0.41 6.60 22.51 0.15 0.56 16 17 C -0.16 -0.48 9.99 22.37 0.22 -0.25 16 18 C -0.08 0.00 8.66 22.25 0.19 0.19 16 19 C -0.16 0.00 5.39 -19.85 -0.11 -0.10 16 20 C -0.06 0.05 2.82 71.24 0.20 0.25 16 21 O -0.56 0.25 12.77 -148.98 -1.90 -1.65 16 22 Si 0.77 -1.30 29.78 68.60 2.04 0.74 16 23 C -0.06 0.02 9.60 22.25 0.21 0.23 16 24 C -0.21 0.16 8.24 22.37 0.18 0.34 16 25 C -0.12 0.65 7.15 31.11 0.22 0.88 16 26 H 0.06 -0.13 8.13 -2.39 -0.02 -0.15 16 27 H 0.13 -0.94 8.14 -2.38 -0.02 -0.96 16 28 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 29 H 0.09 -0.44 8.10 -2.39 -0.02 -0.46 16 30 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.42 -4.47 8.51 -92.71 -0.79 -5.26 16 32 H 0.12 -0.83 6.32 -2.39 -0.02 -0.85 16 33 H 0.11 -1.25 7.94 -2.39 -0.02 -1.27 16 34 H 0.09 -0.59 6.91 -2.39 -0.02 -0.61 16 35 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.14 0.32 8.06 -2.91 -0.02 0.29 16 37 H 0.15 -0.57 4.87 -2.91 -0.01 -0.58 16 38 H 0.11 0.02 7.96 -2.39 -0.02 0.01 16 39 H 0.40 -3.26 8.70 -74.06 -0.64 -3.90 16 40 H -0.30 -1.74 7.11 99.48 0.71 -1.03 16 41 H -0.29 -0.97 7.11 99.48 0.71 -0.27 16 42 H 0.14 -0.32 8.06 -2.91 -0.02 -0.34 16 43 H 0.15 -0.94 5.43 -2.91 -0.02 -0.96 16 44 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 45 H 0.10 -0.49 7.40 -2.39 -0.02 -0.50 16 Total: 0.00 -26.21 377.85 1.56 -24.65 By element: Atomic # 1 Polarization: -19.18 SS G_CDS: -0.36 Total: -19.54 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 4.75 Total: 9.14 kcal Atomic # 7 Polarization: 3.16 SS G_CDS: -2.34 Total: 0.82 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -2.53 Total: -15.81 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: 2.04 Total: 0.74 kcal Total: -26.21 1.56 -24.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_10157680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.972 kcal (2) G-P(sol) polarization free energy of solvation -26.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds