Wall clock time and date at job start Sat Mar 6 2021 15:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34221 * 117.00226 * 2 1 4 4 O 1.20828 * 120.00197 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00207 * 180.02562 * 3 2 1 6 6 H 1.09004 * 112.84711 * 311.19450 * 5 3 2 7 7 C 1.53951 * 113.74665 * 82.39962 * 5 3 2 8 8 C 1.53777 * 87.02178 * 139.94836 * 7 5 3 9 9 H 1.08994 * 113.61571 * 89.22670 * 8 7 5 10 10 N 1.46499 * 113.61524 * 220.05234 * 8 7 5 11 11 C 1.34780 * 119.99858 * 254.13860 * 10 8 7 12 12 O 1.21697 * 119.99987 * 5.11135 * 11 10 8 13 13 C 1.46678 * 120.00073 * 185.11946 * 11 10 8 14 14 C 1.37874 * 126.23382 * 5.37397 * 13 11 10 15 15 C 1.39831 * 107.08395 * 180.23944 * 14 13 11 16 16 C 1.35453 * 107.86709 * 359.76034 * 15 14 13 17 17 C 1.50696 * 125.56252 * 179.97438 * 16 15 14 18 18 O 1.42906 * 109.46926 * 210.02286 * 17 16 15 19 19 Si 1.86299 * 109.47256 * 330.02423 * 17 16 15 20 20 N 1.35529 * 108.86705 * 0.02562 * 16 15 14 21 21 C 1.46508 * 125.67162 * 179.97438 * 20 16 15 22 22 C 1.53776 * 113.61594 * 180.02562 * 5 3 2 23 23 H 1.09002 * 109.47014 * 300.00461 * 1 2 3 24 24 H 1.09001 * 109.47005 * 59.99907 * 1 2 3 25 25 H 1.08999 * 109.47737 * 180.02562 * 1 2 3 26 26 H 1.09000 * 113.61445 * 25.42532 * 7 5 3 27 27 H 1.09009 * 113.66602 * 254.47727 * 7 5 3 28 28 H 0.97000 * 120.00097 * 74.12455 * 10 8 7 29 29 H 1.08009 * 126.45485 * 359.97438 * 14 13 11 30 30 H 1.08006 * 126.06635 * 179.78156 * 15 14 13 31 31 H 1.09002 * 109.47211 * 90.02678 * 17 16 15 32 32 H 0.96697 * 113.99848 * 180.02562 * 18 17 16 33 33 H 1.48499 * 110.00003 * 299.99745 * 19 17 16 34 34 H 1.48499 * 109.99881 * 61.32088 * 19 17 16 35 35 H 1.08998 * 109.47322 * 84.19670 * 21 20 16 36 36 H 1.08993 * 109.46871 * 324.18995 * 21 20 16 37 37 H 1.09003 * 109.46377 * 204.19515 * 21 20 16 38 38 H 1.09004 * 113.61733 * 105.38702 * 22 5 3 39 39 H 1.09001 * 113.69312 * 334.49146 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0239 0.6361 0.7550 7 6 4.1946 1.1214 -1.3976 8 6 5.1821 2.2262 -0.9868 9 1 6.0819 1.8491 -0.5009 10 7 5.4723 3.1821 -2.0584 11 6 6.6594 3.1405 -2.6953 12 8 7.4531 2.2525 -2.4456 13 6 6.9947 4.1658 -3.6893 14 6 6.2433 5.2804 -3.9957 15 6 6.9293 5.9760 -4.9961 16 6 8.0652 5.2922 -5.2735 17 6 9.1004 5.6896 -6.2940 18 8 9.7292 4.5173 -6.8160 19 14 8.2787 6.6236 -7.6808 20 7 8.1181 4.1917 -4.4842 21 6 9.1900 3.1931 -4.4814 22 6 4.1078 2.7140 0.0001 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.5284 1.4112 -2.2102 27 1 4.6667 0.1525 -1.5611 28 1 4.8100 3.8449 -2.3096 29 1 5.3002 5.5610 -3.5502 30 1 6.6102 6.8954 -5.4644 31 1 9.8503 6.3248 -5.8224 32 1 10.4087 4.6980 -7.4798 33 1 7.2541 5.7684 -8.3320 34 1 7.6483 7.8614 -7.1559 35 1 10.0031 3.5346 -3.8409 36 1 9.5608 3.0553 -5.4971 37 1 8.8034 2.2463 -4.1042 38 1 4.5100 3.0288 0.9631 39 1 3.4187 3.4415 -0.4290 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_10803936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:33:48 Heat of formation + Delta-G solvation = -69.762577 kcal Electronic energy + Delta-G solvation = -23548.781079 eV Core-core repulsion = 19846.310840 eV Total energy + Delta-G solvation = -3702.470239 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.71179 -41.97242 -40.62098 -39.06971 -37.69562 -37.46621 -35.00025 -33.75042 -31.61077 -29.43563 -27.68374 -27.44936 -26.88146 -26.12399 -23.49450 -22.44797 -21.55979 -20.96484 -20.23573 -19.04229 -18.70770 -18.36324 -18.02628 -17.47415 -17.18490 -16.87395 -16.40506 -16.19273 -15.90825 -15.43307 -15.33580 -14.95183 -14.61743 -14.46243 -14.32592 -13.94965 -13.70322 -13.68977 -13.56322 -13.25886 -13.16739 -13.02276 -12.67039 -12.55777 -12.37587 -11.93018 -11.88573 -11.85710 -11.47479 -11.19732 -10.60344 -10.26400 -9.90805 -9.20908 -4.93545 0.23813 1.01998 1.12482 1.42946 1.58497 1.73183 1.76013 2.08887 2.16909 2.31042 3.17171 3.19271 3.26781 3.57062 3.61292 3.67042 3.71725 3.90021 3.98753 4.19697 4.23100 4.25637 4.31198 4.39200 4.44176 4.48973 4.52467 4.58348 4.65665 4.77436 4.78701 4.86566 4.88091 4.94710 5.03264 5.29235 5.37547 5.58519 5.84346 6.01597 6.34929 6.61193 6.82467 6.99510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.104 4.104 6 H 0.154 0.846 7 C -0.130 4.130 8 C 0.128 3.872 9 H 0.120 0.880 10 N -0.696 5.696 11 C 0.591 3.409 12 O -0.577 6.577 13 C -0.082 4.082 14 C -0.128 4.128 15 C -0.233 4.233 16 C 0.048 3.952 17 C -0.063 4.063 18 O -0.565 6.565 19 Si 0.820 3.180 20 N -0.399 5.399 21 C 0.063 3.937 22 C -0.118 4.118 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.128 0.872 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.415 0.585 29 H 0.173 0.827 30 H 0.154 0.846 31 H 0.103 0.897 32 H 0.409 0.591 33 H -0.310 1.310 34 H -0.281 1.281 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 1.702 -2.398 3.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.123 4.123 6 H 0.172 0.828 7 C -0.169 4.169 8 C 0.024 3.976 9 H 0.138 0.862 10 N -0.347 5.347 11 C 0.381 3.619 12 O -0.458 6.458 13 C -0.196 4.196 14 C -0.154 4.154 15 C -0.257 4.257 16 C -0.071 4.071 17 C -0.171 4.171 18 O -0.377 6.377 19 Si 0.724 3.276 20 N -0.072 5.072 21 C -0.077 4.077 22 C -0.155 4.155 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.146 0.854 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.253 0.747 29 H 0.190 0.810 30 H 0.172 0.828 31 H 0.120 0.880 32 H 0.263 0.737 33 H -0.238 1.238 34 H -0.208 1.208 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.730 1.087 -2.065 2.905 hybrid contribution -0.825 0.033 0.595 1.018 sum 0.905 1.120 -1.470 2.058 Atomic orbital electron populations 1.23529 0.75019 1.05600 1.02475 1.86520 1.24785 1.33190 1.83458 1.23962 0.92470 0.81021 0.70970 1.90668 1.67869 1.37336 1.46720 1.22448 0.85988 1.01615 1.02234 0.82828 1.23453 0.97615 1.01211 0.94620 1.22496 0.97896 0.89527 0.87727 0.86235 1.45523 1.16097 1.36456 1.36617 1.17092 0.82044 0.82919 0.79880 1.90771 1.50607 1.37873 1.66596 1.20274 0.93341 1.01954 1.03992 1.21627 1.00807 0.93694 0.99288 1.20812 0.96245 1.03935 1.04698 1.20782 0.99406 0.90151 0.96740 1.24795 0.97845 0.93459 1.00983 1.86305 1.58646 1.30326 1.62400 0.94376 0.81354 0.74692 0.77175 1.43986 1.16860 1.19223 1.27101 1.22523 0.88372 0.90866 1.05922 1.23338 0.96310 0.94723 1.01178 0.91898 0.92087 0.85427 0.89468 0.88814 0.74723 0.80956 0.82812 0.87985 0.73713 1.23805 1.20783 0.90592 0.86492 0.89785 0.87847 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -1.16 10.56 -51.33 -0.54 -1.70 16 3 C 0.47 1.79 7.49 71.24 0.53 2.33 16 4 O -0.54 -5.11 15.65 21.96 0.34 -4.77 16 5 C -0.10 0.24 4.25 -10.96 -0.05 0.19 16 6 H 0.15 -1.03 8.14 -2.39 -0.02 -1.05 16 7 C -0.13 0.20 7.45 31.18 0.23 0.43 16 8 C 0.13 -0.11 4.18 45.53 0.19 0.08 16 9 H 0.12 0.07 7.57 -2.39 -0.02 0.05 16 10 N -0.70 -0.86 5.34 -443.93 -2.37 -3.23 16 11 C 0.59 4.85 7.77 86.45 0.67 5.52 16 12 O -0.58 -8.04 14.27 -4.34 -0.06 -8.10 16 13 C -0.08 -0.69 6.89 40.35 0.28 -0.41 16 14 C -0.13 -0.59 10.35 22.57 0.23 -0.36 16 15 C -0.23 -1.30 9.37 22.01 0.21 -1.09 16 16 C 0.05 0.29 6.18 41.34 0.26 0.55 16 17 C -0.06 0.11 2.98 71.23 0.21 0.33 16 18 O -0.57 1.82 9.80 -148.98 -1.46 0.36 16 19 Si 0.82 -3.21 31.22 68.60 2.14 -1.06 16 20 N -0.40 -3.48 3.16 -519.71 -1.64 -5.12 16 21 C 0.06 0.40 10.23 127.77 1.31 1.71 16 22 C -0.12 0.35 7.16 31.13 0.22 0.58 16 23 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 24 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 25 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 26 H 0.09 -0.03 8.10 -2.39 -0.02 -0.05 16 27 H 0.09 -0.17 8.14 -2.38 -0.02 -0.19 16 28 H 0.42 -1.24 7.66 -92.71 -0.71 -1.95 16 29 H 0.17 -0.35 7.49 -2.91 -0.02 -0.38 16 30 H 0.15 0.42 6.69 -2.91 -0.02 0.40 16 31 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 32 H 0.41 -5.80 8.74 -74.06 -0.65 -6.44 16 33 H -0.31 -1.75 7.11 99.48 0.71 -1.05 16 34 H -0.28 -0.15 6.87 99.48 0.68 0.53 16 35 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.12 0.46 5.48 -2.39 -0.01 0.45 16 37 H 0.08 0.80 6.10 -2.39 -0.01 0.79 16 38 H 0.10 -0.55 8.14 -2.39 -0.02 -0.56 16 39 H 0.10 -0.13 7.41 -2.39 -0.02 -0.15 16 Total: 0.00 -24.97 329.01 1.65 -23.32 By element: Atomic # 1 Polarization: -10.47 SS G_CDS: -0.25 Total: -10.72 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 5.49 Total: 11.02 kcal Atomic # 7 Polarization: -4.34 SS G_CDS: -4.01 Total: -8.35 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.72 Total: -14.21 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.14 Total: -1.06 kcal Total: -24.97 1.65 -23.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_10803936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.445 kcal (2) G-P(sol) polarization free energy of solvation -24.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds