Wall clock time and date at job start Sat Mar 6 2021 15:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99751 * 2 1 4 4 O 1.20826 * 120.00098 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99932 * 179.97438 * 3 2 1 6 6 H 1.08999 * 112.90399 * 311.25486 * 5 3 2 7 7 C 1.53777 * 113.61177 * 82.50333 * 5 3 2 8 8 C 1.53777 * 87.07949 * 139.98403 * 7 5 3 9 9 H 1.08996 * 113.69550 * 89.12997 * 8 7 5 10 10 N 1.46507 * 113.61448 * 220.02098 * 8 7 5 11 11 C 1.34777 * 119.99630 * 252.49568 * 10 8 7 12 12 O 1.21720 * 120.00720 * 0.02562 * 11 10 8 13 13 C 1.46571 * 119.99615 * 179.97438 * 11 10 8 14 14 C 1.40858 * 126.57580 * 180.02562 * 13 11 10 15 15 C 1.40087 * 132.87147 * 359.94288 * 14 13 11 16 16 C 1.36447 * 119.25501 * 180.02562 * 15 14 13 17 17 C 1.50708 * 120.29387 * 179.97438 * 16 15 14 18 18 O 1.42897 * 109.46810 * 239.99919 * 17 16 15 19 19 Si 1.86297 * 109.47208 * 119.99858 * 17 16 15 20 20 C 1.40158 * 119.41356 * 359.97438 * 16 15 14 21 21 C 1.35191 * 120.31288 * 359.97438 * 20 16 15 22 22 N 1.36235 * 120.70597 * 0.03678 * 21 20 16 23 23 N 1.40024 * 132.00835 * 179.64561 * 22 21 20 24 24 C 1.30737 * 109.60604 * 179.86087 * 23 22 21 25 25 C 1.53771 * 113.61639 * 180.02562 * 5 3 2 26 26 H 1.08995 * 109.47161 * 299.99982 * 1 2 3 27 27 H 1.09005 * 109.47117 * 60.00368 * 1 2 3 28 28 H 1.09000 * 109.47019 * 179.97438 * 1 2 3 29 29 H 1.09001 * 113.62047 * 25.43427 * 7 5 3 30 30 H 1.09002 * 113.61745 * 254.52789 * 7 5 3 31 31 H 0.96998 * 120.00249 * 72.49012 * 10 8 7 32 32 H 1.08005 * 120.36822 * 0.02562 * 15 14 13 33 33 H 1.09005 * 109.47085 * 359.97438 * 17 16 15 34 34 H 0.96702 * 113.99881 * 179.97438 * 18 17 16 35 35 H 1.48498 * 109.99982 * 298.67706 * 19 17 16 36 36 H 1.48501 * 109.99985 * 59.99849 * 19 17 16 37 37 H 1.07999 * 119.84156 * 180.02562 * 20 16 15 38 38 H 1.07996 * 119.64164 * 180.02562 * 21 20 16 39 39 H 1.07995 * 125.62973 * 180.15218 * 24 23 22 40 40 H 1.09000 * 113.62002 * 105.47041 * 25 5 3 41 41 H 1.09003 * 113.61540 * 334.56765 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0243 0.6361 0.7557 7 6 4.1916 1.1233 -1.3961 8 6 5.1814 2.2267 -0.9865 9 1 6.0816 1.8495 -0.5013 10 7 5.4708 3.1828 -2.0582 11 6 6.6690 3.1614 -2.6748 12 8 7.5106 2.3474 -2.3418 13 6 6.9584 4.1176 -3.7473 14 6 8.1562 4.2180 -4.4816 15 6 9.3625 3.5070 -4.4395 16 6 10.3666 3.8457 -5.2991 17 6 11.6742 3.0968 -5.2735 18 8 12.7374 4.0048 -4.9785 19 14 11.9722 2.3107 -6.9360 20 6 10.1711 4.8962 -6.2061 21 6 8.9981 5.5679 -6.2297 22 7 7.9898 5.2373 -5.3753 23 7 6.7060 5.7653 -5.1919 24 6 6.0930 5.1083 -4.2423 25 6 4.1077 2.7142 0.0011 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5243 1.4145 -2.2073 30 1 4.6621 0.1540 -1.5611 31 1 4.8001 3.8312 -2.3239 32 1 9.4962 2.6998 -3.7344 33 1 11.6346 2.3228 -4.5070 34 1 13.6106 3.5907 -4.9455 35 1 10.8899 1.3404 -7.2404 36 1 12.0283 3.3559 -7.9894 37 1 10.9610 5.1698 -6.8899 38 1 8.8591 6.3753 -6.9333 39 1 5.0894 5.2992 -3.8919 40 1 4.5105 3.0289 0.9639 41 1 3.4174 3.4406 -0.4279 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_11618758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:33:51 Heat of formation + Delta-G solvation = -14.807220 kcal Electronic energy + Delta-G solvation = -27421.313508 eV Core-core repulsion = 23271.121980 eV Total energy + Delta-G solvation = -4150.191528 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.42119 -41.96599 -40.67262 -39.33331 -38.92716 -37.43100 -37.27437 -34.64064 -34.24303 -32.27763 -30.55400 -29.31286 -27.55164 -26.81402 -26.68763 -25.06166 -23.90441 -23.10608 -22.22379 -21.44814 -20.62775 -19.22322 -18.98813 -18.38980 -18.11997 -17.81582 -17.57870 -17.41690 -17.06296 -16.87628 -16.38644 -16.20482 -15.92559 -15.65293 -15.47358 -15.10123 -14.59581 -14.45360 -14.30939 -14.25306 -13.95099 -13.61821 -13.51227 -13.41658 -13.11092 -13.01004 -12.61151 -12.48876 -12.33101 -12.16952 -11.98108 -11.85947 -11.80451 -11.71644 -11.42163 -11.01138 -10.85086 -10.23532 -10.12389 -8.91290 -5.00877 -0.68934 -0.24951 0.90277 0.92708 1.06118 1.23165 1.64585 1.66566 1.90977 1.97606 2.24666 2.38162 2.95335 3.09844 3.25671 3.34401 3.41087 3.59826 3.68689 3.70231 3.76822 3.80465 3.89148 4.03004 4.13262 4.24805 4.26204 4.27754 4.32125 4.47952 4.53448 4.59433 4.64435 4.67007 4.68235 4.84356 4.93720 5.00235 5.03815 5.11781 5.17764 5.32746 5.51358 5.53526 6.17935 6.52965 6.64465 6.86761 7.21845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.537 6.537 5 C -0.105 4.105 6 H 0.152 0.848 7 C -0.130 4.130 8 C 0.129 3.871 9 H 0.118 0.882 10 N -0.705 5.705 11 C 0.603 3.397 12 O -0.585 6.585 13 C -0.338 4.338 14 C 0.149 3.851 15 C -0.118 4.118 16 C -0.032 4.032 17 C -0.082 4.082 18 O -0.557 6.557 19 Si 0.803 3.197 20 C -0.151 4.151 21 C 0.108 3.892 22 N -0.275 5.275 23 N -0.339 5.339 24 C 0.131 3.869 25 C -0.119 4.119 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.413 0.587 32 H 0.158 0.842 33 H 0.094 0.906 34 H 0.409 0.591 35 H -0.305 1.305 36 H -0.274 1.274 37 H 0.182 0.818 38 H 0.205 0.795 39 H 0.236 0.764 40 H 0.099 0.901 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 -2.654 -1.361 4.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.124 4.124 6 H 0.170 0.830 7 C -0.169 4.169 8 C 0.024 3.976 9 H 0.136 0.864 10 N -0.356 5.356 11 C 0.393 3.607 12 O -0.466 6.466 13 C -0.352 4.352 14 C 0.027 3.973 15 C -0.138 4.138 16 C -0.038 4.038 17 C -0.190 4.190 18 O -0.368 6.368 19 Si 0.706 3.294 20 C -0.172 4.172 21 C -0.017 4.017 22 N -0.039 5.039 23 N -0.159 5.159 24 C -0.050 4.050 25 C -0.157 4.157 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.250 0.750 32 H 0.175 0.825 33 H 0.112 0.888 34 H 0.261 0.739 35 H -0.233 1.233 36 H -0.200 1.200 37 H 0.200 0.800 38 H 0.221 0.779 39 H 0.252 0.748 40 H 0.118 0.882 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.037 -1.614 -2.737 4.395 hybrid contribution -1.242 -0.026 0.871 1.517 sum 1.794 -1.640 -1.866 3.064 Atomic orbital electron populations 1.23524 0.75075 1.05571 1.02454 1.86525 1.24741 1.33241 1.83484 1.23992 0.92498 0.80991 0.70929 1.90664 1.67871 1.37340 1.46750 1.22429 0.85892 1.01696 1.02379 0.83003 1.23427 0.97677 1.01265 0.94487 1.22412 0.97652 0.89599 0.87967 0.86408 1.45542 1.15463 1.37295 1.37263 1.16937 0.81862 0.81729 0.80195 1.90747 1.47944 1.41057 1.66888 1.19747 0.95788 1.09685 1.10012 1.19573 0.95894 0.90354 0.91437 1.20718 0.90320 1.01873 1.00859 1.19878 0.95947 0.94547 0.93413 1.24887 0.85290 0.95128 1.13725 1.86425 1.18877 1.37021 1.94430 0.94247 0.86102 0.77227 0.71830 1.21165 0.97258 0.96899 1.01839 1.22172 0.84878 1.01124 0.93535 1.46306 1.11874 1.22075 1.23643 1.77574 0.89174 1.24303 1.24854 1.24643 1.00356 0.89685 0.90310 1.23347 0.96520 0.94652 1.01209 0.91955 0.92068 0.85460 0.89315 0.88908 0.75046 0.82459 0.88826 0.73869 1.23284 1.20043 0.80036 0.77852 0.74811 0.88235 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.36 -1.09 10.57 -51.42 -0.54 -1.63 16 3 C 0.47 1.69 7.48 71.24 0.53 2.23 16 4 O -0.54 -4.98 15.65 21.96 0.34 -4.64 16 5 C -0.10 0.25 4.26 -11.02 -0.05 0.21 16 6 H 0.15 -0.99 8.14 -2.39 -0.02 -1.01 16 7 C -0.13 0.27 7.43 31.12 0.23 0.50 16 8 C 0.13 -0.14 4.24 45.53 0.19 0.05 16 9 H 0.12 0.11 7.46 -2.39 -0.02 0.09 16 10 N -0.71 -0.23 5.35 -444.03 -2.37 -2.60 16 11 C 0.60 4.60 7.78 86.42 0.67 5.27 16 12 O -0.58 -8.17 15.30 -4.41 -0.07 -8.24 16 13 C -0.34 -2.54 6.17 -19.90 -0.12 -2.67 16 14 C 0.15 1.41 6.76 39.49 0.27 1.67 16 15 C -0.12 -0.88 9.35 22.30 0.21 -0.68 16 16 C -0.03 -0.11 4.53 -19.81 -0.09 -0.20 16 17 C -0.08 0.23 2.80 71.24 0.20 0.43 16 18 O -0.56 2.03 12.76 -148.98 -1.90 0.13 16 19 Si 0.80 -4.11 31.97 68.60 2.19 -1.92 16 20 C -0.15 -0.16 8.67 22.03 0.19 0.03 16 21 C 0.11 0.23 11.17 83.31 0.93 1.16 16 22 N -0.27 -2.13 3.86 -187.28 -0.72 -2.85 16 23 N -0.34 -2.62 12.57 -56.62 -0.71 -3.33 16 24 C 0.13 0.43 11.44 85.42 0.98 1.40 16 25 C -0.12 0.36 7.16 31.13 0.22 0.58 16 26 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 27 H 0.06 -0.02 8.13 -2.38 -0.02 -0.04 16 28 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H 0.09 -0.12 8.09 -2.39 -0.02 -0.14 16 30 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.41 -2.02 7.65 -92.71 -0.71 -2.73 16 32 H 0.16 1.26 7.01 -2.91 -0.02 1.24 16 33 H 0.09 -0.47 7.71 -2.38 -0.02 -0.49 16 34 H 0.41 -5.78 8.74 -74.06 -0.65 -6.43 16 35 H -0.30 -0.97 7.11 99.48 0.71 -0.26 16 36 H -0.27 0.24 7.07 99.48 0.70 0.95 16 37 H 0.18 -0.66 7.52 -2.91 -0.02 -0.68 16 38 H 0.20 -0.91 8.06 -2.91 -0.02 -0.93 16 39 H 0.24 -1.52 7.46 -2.91 -0.02 -1.54 16 40 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.10 -0.16 7.41 -2.39 -0.02 -0.18 16 Total: 0.00 -29.23 357.95 1.56 -27.68 By element: Atomic # 1 Polarization: -13.53 SS G_CDS: -0.22 Total: -13.76 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 5.56 Total: 11.17 kcal Atomic # 7 Polarization: -4.98 SS G_CDS: -3.81 Total: -8.79 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -2.17 Total: -14.38 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.19 Total: -1.92 kcal Total: -29.23 1.56 -27.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_11618758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.869 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds