Wall clock time and date at job start Sat Mar 6 2021 15:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 117.00115 * 2 1 4 4 O 1.20823 * 119.99724 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99616 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.85148 * 48.80853 * 5 3 2 7 7 C 1.53787 * 113.60917 * 180.02562 * 5 3 2 8 8 C 1.53784 * 87.07923 * 140.06705 * 7 5 3 9 9 H 1.09002 * 113.61478 * 89.11632 * 8 7 5 10 10 N 1.46497 * 113.61569 * 220.01663 * 8 7 5 11 11 C 1.34769 * 120.00274 * 204.99925 * 10 8 7 12 12 O 1.21566 * 119.99906 * 359.97438 * 11 10 8 13 13 C 1.47695 * 119.99922 * 179.97438 * 11 10 8 14 14 C 1.39829 * 120.16487 * 179.72471 * 13 11 10 15 15 F 1.35096 * 120.10907 * 0.02562 * 14 13 11 16 16 C 1.38323 * 119.77845 * 179.79107 * 14 13 11 17 17 C 1.38200 * 120.11719 * 0.48600 * 16 14 13 18 18 C 1.38458 * 120.33871 * 359.74320 * 17 16 14 19 19 C 1.50703 * 119.89037 * 179.97438 * 18 17 16 20 20 O 1.42897 * 109.47508 * 245.02019 * 19 18 17 21 21 Si 1.86293 * 109.47235 * 5.02396 * 19 18 17 22 22 C 1.37857 * 120.21898 * 0.02562 * 18 17 16 23 23 C 1.53779 * 87.08045 * 334.56667 * 8 7 5 24 24 H 1.09002 * 109.46922 * 300.00039 * 1 2 3 25 25 H 1.09007 * 109.47142 * 59.99225 * 1 2 3 26 26 H 1.08994 * 109.47421 * 179.97438 * 1 2 3 27 27 H 1.09004 * 113.61202 * 254.61458 * 7 5 3 28 28 H 1.08994 * 113.61447 * 25.51889 * 7 5 3 29 29 H 0.97009 * 119.99534 * 24.99936 * 10 8 7 30 30 H 1.08000 * 119.93830 * 180.22844 * 16 14 13 31 31 H 1.08000 * 119.83347 * 179.72062 * 17 16 14 32 32 H 1.09007 * 109.46848 * 125.02462 * 19 18 17 33 33 H 0.96696 * 114.00616 * 180.02562 * 20 19 18 34 34 H 1.48507 * 110.00009 * 299.99806 * 21 19 18 35 35 H 1.48500 * 110.00093 * 61.31477 * 21 19 18 36 36 H 1.08007 * 120.06021 * 179.97438 * 22 18 17 37 37 H 1.09006 * 113.61307 * 270.88660 * 23 8 7 38 38 H 1.09007 * 113.61642 * 139.98417 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 4.0240 0.6361 -0.7550 7 6 4.1078 2.7141 0.0011 8 6 5.1821 2.2259 0.9873 9 1 6.0815 1.8476 0.5012 10 7 5.4724 3.1813 2.0593 11 6 6.6709 3.1594 2.6752 12 8 7.5110 2.3467 2.3415 13 6 6.9636 4.1230 3.7555 14 6 8.2039 4.0997 4.4008 15 9 9.1398 3.1956 4.0379 16 6 8.4711 5.0087 5.4087 17 6 7.5119 5.9303 5.7836 18 6 6.2805 5.9546 5.1512 19 6 5.2417 6.9635 5.5685 20 8 4.1175 6.2847 6.1318 21 14 5.9705 8.1167 6.8372 22 6 6.0010 5.0582 4.1417 23 6 4.1926 1.1223 1.3968 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 4.5099 3.0297 -0.9616 28 1 3.4178 3.4400 0.4313 29 1 4.8018 3.8296 2.3258 30 1 9.4296 4.9954 5.9063 31 1 7.7239 6.6349 6.5741 32 1 4.9214 7.5364 4.6981 33 1 3.4078 6.8734 6.4228 34 1 6.4110 7.3477 8.0288 35 1 7.1209 8.8522 6.2536 36 1 5.0394 5.0792 3.6505 37 1 3.5257 1.4131 2.2085 38 1 4.6631 0.1528 1.5609 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_12335834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:34:00 Heat of formation + Delta-G solvation = -133.590187 kcal Electronic energy + Delta-G solvation = -25170.363964 eV Core-core repulsion = 21088.409366 eV Total energy + Delta-G solvation = -4081.954598 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.14069 -42.07276 -41.34613 -40.21001 -39.10560 -37.48170 -37.41782 -34.93958 -32.78489 -32.44907 -29.39444 -27.16078 -26.86770 -26.62901 -25.44788 -23.47489 -22.21723 -21.75266 -20.71020 -19.26338 -18.95930 -18.58208 -18.26848 -18.05418 -17.71976 -17.44114 -17.02673 -16.66634 -16.42242 -16.22676 -15.87154 -15.79624 -15.43339 -14.86701 -14.57857 -14.46970 -14.26778 -14.14982 -13.95957 -13.71204 -13.59442 -13.39681 -13.02916 -12.72867 -12.60063 -12.45707 -12.33649 -11.99774 -11.86521 -11.84647 -11.45932 -11.21742 -10.56256 -10.36147 -10.21267 -9.91942 -4.91333 -0.66855 -0.18036 1.04291 1.29910 1.45840 1.59995 1.68347 1.96356 1.99497 2.31991 2.88348 3.19522 3.23070 3.24716 3.29510 3.44840 3.61568 3.66370 3.72162 3.88368 3.99852 4.04502 4.23301 4.25411 4.28307 4.43306 4.48177 4.54759 4.59411 4.64781 4.66299 4.68353 4.74699 4.79284 4.89159 4.97977 5.00867 5.30925 5.37266 5.42889 6.26442 6.63340 6.91806 6.94273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.534 6.534 5 C -0.104 4.104 6 H 0.152 0.848 7 C -0.116 4.116 8 C 0.122 3.878 9 H 0.118 0.882 10 N -0.698 5.698 11 C 0.560 3.440 12 O -0.564 6.564 13 C -0.184 4.184 14 C 0.137 3.863 15 F -0.131 7.131 16 C -0.154 4.154 17 C -0.074 4.074 18 C -0.101 4.101 19 C -0.074 4.074 20 O -0.562 6.562 21 Si 0.765 3.235 22 C -0.021 4.021 23 C -0.131 4.131 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.126 0.874 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.415 0.585 30 H 0.164 0.836 31 H 0.141 0.859 32 H 0.108 0.892 33 H 0.407 0.593 34 H -0.293 1.293 35 H -0.285 1.285 36 H 0.168 0.832 37 H 0.091 0.909 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 5.214 1.198 7.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.424 6.424 5 C -0.124 4.124 6 H 0.169 0.831 7 C -0.154 4.154 8 C 0.018 3.982 9 H 0.136 0.864 10 N -0.350 5.350 11 C 0.348 3.652 12 O -0.443 6.443 13 C -0.188 4.188 14 C 0.116 3.884 15 F -0.109 7.109 16 C -0.173 4.173 17 C -0.091 4.091 18 C -0.101 4.101 19 C -0.185 4.185 20 O -0.372 6.372 21 Si 0.671 3.329 22 C -0.039 4.039 23 C -0.169 4.169 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.145 0.855 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.254 0.746 30 H 0.181 0.819 31 H 0.158 0.842 32 H 0.126 0.874 33 H 0.258 0.742 34 H -0.221 1.221 35 H -0.212 1.212 36 H 0.185 0.815 37 H 0.109 0.891 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.488 4.584 1.253 6.537 hybrid contribution -0.012 -0.432 -0.266 0.507 sum -4.501 4.153 0.988 6.203 Atomic orbital electron populations 1.23529 0.74981 1.05563 1.02533 1.86525 1.24817 1.33225 1.83461 1.23914 0.92383 0.81042 0.71015 1.90662 1.67801 1.37262 1.46659 1.22406 0.86124 1.01664 1.02171 0.83053 1.23337 0.96227 0.94737 1.01128 1.22517 0.97942 0.89762 0.88020 0.86432 1.45724 1.15210 1.37135 1.36903 1.18173 0.82485 0.82967 0.81613 1.90841 1.47711 1.40101 1.65688 1.20138 0.95515 1.01836 1.01305 1.18056 0.86068 0.88826 0.95403 1.91567 1.63635 1.65160 1.90567 1.21282 1.02664 0.95575 0.97751 1.21201 0.93024 0.97023 0.97890 1.19734 0.94876 0.98586 0.96921 1.24731 0.90142 0.97563 1.06021 1.86433 1.29782 1.38377 1.82657 0.94097 0.82737 0.79894 0.76193 1.21268 0.97963 0.90355 0.94344 1.23433 0.97603 1.01107 0.94791 0.91945 0.91892 0.85545 0.87968 0.88011 0.74624 0.81869 0.84176 0.87436 0.74152 1.22107 1.21195 0.81508 0.89064 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.88 10.57 -51.41 -0.54 -1.43 16 3 C 0.47 1.32 7.49 71.24 0.53 1.86 16 4 O -0.53 -4.33 15.65 21.97 0.34 -3.98 16 5 C -0.10 0.31 4.26 -11.01 -0.05 0.26 16 6 H 0.15 -1.03 8.14 -2.39 -0.02 -1.05 16 7 C -0.12 0.46 7.16 31.12 0.22 0.68 16 8 C 0.12 -0.16 4.24 45.52 0.19 0.03 16 9 H 0.12 0.13 7.47 -2.39 -0.02 0.11 16 10 N -0.70 0.12 5.30 -443.07 -2.35 -2.23 16 11 C 0.56 4.22 7.77 86.74 0.67 4.90 16 12 O -0.56 -9.04 14.94 -3.92 -0.06 -9.10 16 13 C -0.18 -1.01 5.88 -20.05 -0.12 -1.13 16 14 C 0.14 1.13 7.29 22.68 0.17 1.29 16 15 F -0.13 -1.82 15.55 44.97 0.70 -1.12 16 16 C -0.15 -0.52 10.01 22.28 0.22 -0.29 16 17 C -0.07 -0.10 8.66 22.31 0.19 0.09 16 18 C -0.10 0.03 5.38 -19.90 -0.11 -0.07 16 19 C -0.07 0.47 2.79 71.24 0.20 0.67 16 20 O -0.56 3.31 12.81 -148.98 -1.91 1.40 16 21 Si 0.76 -4.92 29.84 68.60 2.05 -2.87 16 22 C -0.02 0.01 9.17 22.52 0.21 0.22 16 23 C -0.13 0.29 7.43 31.12 0.23 0.52 16 24 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 25 H 0.06 -0.08 8.13 -2.38 -0.02 -0.10 16 26 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 27 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.10 -0.32 7.41 -2.39 -0.02 -0.33 16 29 H 0.42 -2.35 6.76 -92.70 -0.63 -2.98 16 30 H 0.16 -0.11 8.06 -2.91 -0.02 -0.13 16 31 H 0.14 -0.10 4.84 -2.91 -0.01 -0.12 16 32 H 0.11 -1.22 7.96 -2.38 -0.02 -1.24 16 33 H 0.41 -6.42 8.74 -74.06 -0.65 -7.06 16 34 H -0.29 -0.32 7.04 99.48 0.70 0.38 16 35 H -0.28 0.27 7.11 99.48 0.71 0.98 16 36 H 0.17 -1.12 6.41 -2.91 -0.02 -1.14 16 37 H 0.09 -0.16 8.10 -2.38 -0.02 -0.18 16 38 H 0.09 -0.19 8.14 -2.38 -0.02 -0.21 16 Total: 0.00 -25.69 331.46 1.88 -23.81 By element: Atomic # 1 Polarization: -14.55 SS G_CDS: -0.11 Total: -14.66 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 3.77 Total: 10.18 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -2.35 Total: -2.23 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -2.17 Total: -13.11 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.70 Total: -1.12 kcal Atomic # 14 Polarization: -4.92 SS G_CDS: 2.05 Total: -2.87 kcal Total: -25.69 1.88 -23.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_12335834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.784 kcal (2) G-P(sol) polarization free energy of solvation -25.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds