Wall clock time and date at job start Sat Mar 6 2021 15:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 116.99964 * 2 1 4 4 O 1.20828 * 120.00167 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99978 * 179.97438 * 3 2 1 6 6 H 1.09003 * 112.84515 * 48.80347 * 5 3 2 7 7 C 1.53780 * 113.61424 * 179.97438 * 5 3 2 8 8 C 1.53780 * 87.08118 * 139.98333 * 7 5 3 9 9 H 1.09003 * 113.61599 * 89.19785 * 8 7 5 10 10 N 1.46499 * 113.61714 * 220.02037 * 8 7 5 11 11 C 1.34777 * 120.00199 * 205.00175 * 10 8 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 8 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 8 14 14 C 1.50700 * 109.46869 * 179.72354 * 13 11 10 15 15 C 1.38233 * 119.99587 * 269.72348 * 14 13 11 16 16 C 1.38239 * 119.99714 * 179.74719 * 15 14 13 17 17 C 1.38233 * 119.99699 * 0.52944 * 16 15 14 18 18 C 1.50704 * 119.99993 * 179.76909 * 17 16 15 19 19 O 1.42902 * 109.47285 * 244.98113 * 18 17 16 20 20 Si 1.86304 * 109.47047 * 4.97556 * 18 17 16 21 21 C 1.38237 * 120.00583 * 359.74520 * 17 16 15 22 22 C 1.38233 * 119.99980 * 90.00014 * 14 13 11 23 23 C 1.53783 * 87.08250 * 334.56795 * 8 7 5 24 24 H 1.09007 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47376 * 300.00303 * 1 2 3 26 26 H 1.09002 * 109.47574 * 60.00430 * 1 2 3 27 27 H 1.08998 * 113.61271 * 25.43256 * 7 5 3 28 28 H 1.09003 * 113.61317 * 254.53054 * 7 5 3 29 29 H 0.97000 * 119.99484 * 24.99272 * 10 8 7 30 30 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 31 31 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 32 32 H 1.07996 * 120.00354 * 359.97438 * 15 14 13 33 33 H 1.07997 * 119.99851 * 180.29526 * 16 15 14 34 34 H 1.09004 * 109.47372 * 124.97561 * 18 17 16 35 35 H 0.96698 * 114.00096 * 180.02562 * 19 18 17 36 36 H 1.48499 * 110.00250 * 178.67776 * 20 18 17 37 37 H 1.48500 * 110.00124 * 300.00327 * 20 18 17 38 38 H 1.07993 * 120.00347 * 179.97438 * 21 17 16 39 39 H 1.07998 * 120.00331 * 0.02562 * 22 14 13 40 40 H 1.08995 * 113.61760 * 139.97795 * 23 8 7 41 41 H 1.08998 * 113.61505 * 270.89080 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0238 0.6361 -0.7550 7 6 4.1077 2.7142 -0.0001 8 6 5.1806 2.2274 0.9882 9 1 6.0812 1.8497 0.5040 10 7 5.4693 3.1843 2.0593 11 6 6.6670 3.1634 2.6769 12 8 7.5057 2.3521 2.3462 13 6 6.9616 4.1437 3.7830 14 6 8.3550 3.9069 4.3060 15 6 8.5602 3.0271 5.3523 16 6 9.8390 2.8060 5.8286 17 6 10.9111 3.4729 5.2658 18 6 12.3045 3.2358 5.7885 19 8 12.8055 4.4399 6.3727 20 14 12.2639 1.8907 7.0770 21 6 10.7052 4.3570 4.2233 22 6 9.4271 4.5738 3.7432 23 6 4.1905 1.1243 1.3979 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.4170 3.4406 0.4280 28 1 4.5112 3.0284 -0.9627 29 1 4.7983 3.8329 2.3239 30 1 6.8862 5.1603 3.3971 31 1 6.2424 4.0073 4.5904 32 1 7.7221 2.5098 5.7952 33 1 9.9999 2.1151 6.6429 34 1 12.9540 2.9327 4.9673 35 1 13.7004 4.3608 6.7304 36 1 13.6366 1.6252 7.5775 37 1 11.3817 2.2917 8.2022 38 1 11.5427 4.8783 3.7839 39 1 9.2661 5.2648 2.9290 40 1 4.6608 0.1552 1.5639 41 1 3.5225 1.4162 2.2082 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_12335836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:34:02 Heat of formation + Delta-G solvation = -98.058278 kcal Electronic energy + Delta-G solvation = -24011.028098 eV Core-core repulsion = 20244.530635 eV Total energy + Delta-G solvation = -3766.497462 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98296 -41.10757 -40.24936 -39.06208 -37.75331 -37.41725 -34.56874 -34.01696 -31.92710 -30.07554 -29.18725 -26.91726 -26.80044 -25.49982 -23.80542 -22.80777 -21.88610 -21.37719 -20.58026 -18.96637 -18.57652 -18.05969 -17.98503 -17.51251 -17.40480 -16.92927 -16.53950 -16.28285 -16.00077 -15.86580 -15.21784 -14.97976 -14.60181 -14.48363 -14.33365 -14.26144 -13.97559 -13.66714 -13.54499 -13.51292 -13.04321 -13.01178 -12.84554 -12.48880 -12.31168 -12.23097 -11.93214 -11.85188 -11.77626 -11.72188 -11.41333 -10.91480 -10.50413 -10.04785 -9.85924 -9.59424 -4.93866 0.25048 0.47127 1.06286 1.28179 1.56765 1.65344 1.68077 1.90406 2.25777 2.77011 3.26793 3.35653 3.40875 3.66008 3.69588 3.77237 3.86145 3.92193 3.99168 4.06981 4.11153 4.26158 4.28632 4.31385 4.46841 4.50342 4.54965 4.60828 4.63859 4.66704 4.68888 4.73639 4.85550 4.94518 5.02606 5.10172 5.15442 5.33640 5.39198 5.54882 5.55817 5.60052 6.02781 6.56690 6.57261 6.65163 7.28664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.537 6.537 5 C -0.108 4.108 6 H 0.149 0.851 7 C -0.120 4.120 8 C 0.127 3.873 9 H 0.113 0.887 10 N -0.711 5.711 11 C 0.517 3.483 12 O -0.572 6.572 13 C -0.100 4.100 14 C -0.071 4.071 15 C -0.110 4.110 16 C -0.127 4.127 17 C -0.091 4.091 18 C -0.087 4.087 19 O -0.558 6.558 20 Si 0.761 3.239 21 C -0.109 4.109 22 C -0.116 4.116 23 C -0.128 4.128 24 H 0.127 0.873 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.417 0.583 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.394 0.606 36 H -0.284 1.284 37 H -0.295 1.295 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.563 -1.650 -0.855 3.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.127 4.127 6 H 0.167 0.833 7 C -0.158 4.158 8 C 0.021 3.979 9 H 0.131 0.869 10 N -0.363 5.363 11 C 0.305 3.695 12 O -0.451 6.451 13 C -0.139 4.139 14 C -0.072 4.072 15 C -0.128 4.128 16 C -0.144 4.144 17 C -0.091 4.091 18 C -0.196 4.196 19 O -0.368 6.368 20 Si 0.666 3.334 21 C -0.127 4.127 22 C -0.134 4.134 23 C -0.167 4.167 24 H 0.145 0.855 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.254 0.746 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.107 0.893 35 H 0.244 0.756 36 H -0.211 1.211 37 H -0.223 1.223 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.109 0.891 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.614 -1.936 -0.455 3.284 hybrid contribution 0.305 1.237 0.245 1.298 sum -2.309 -0.699 -0.210 2.421 Atomic orbital electron populations 1.23525 0.75056 1.05582 1.02464 1.86524 1.24760 1.33274 1.83474 1.24008 0.92522 0.80978 0.70921 1.90665 1.67888 1.37335 1.46778 1.22454 0.85876 1.01803 1.02553 0.83324 1.23331 0.96667 0.94543 1.01219 1.22335 0.97345 0.89839 0.88364 0.86874 1.45894 1.16280 1.37024 1.37115 1.20941 0.81342 0.84331 0.82898 1.90741 1.47626 1.40651 1.66049 1.20761 0.94761 1.00593 0.97778 1.19580 0.94974 0.96821 0.95793 1.21209 0.97261 0.97645 0.96716 1.21147 0.92804 1.00227 1.00266 1.19483 0.93941 0.98636 0.97053 1.25025 0.94466 0.95071 1.05022 1.86542 1.37242 1.33697 1.79275 0.94024 0.78426 0.83610 0.77356 1.21119 0.97619 0.97489 0.96444 1.21253 0.92254 1.00119 0.99742 1.23412 0.97689 1.01269 0.94338 0.85466 0.91981 0.92017 0.88324 0.88544 0.74615 0.85367 0.85152 0.83977 0.84644 0.89256 0.75597 1.21080 1.22290 0.85695 0.84717 0.89058 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.75 10.56 -51.38 -0.54 -1.29 16 3 C 0.47 1.18 7.48 71.24 0.53 1.71 16 4 O -0.54 -4.39 15.65 21.96 0.34 -4.05 16 5 C -0.11 0.39 4.26 -11.01 -0.05 0.35 16 6 H 0.15 -1.07 8.14 -2.39 -0.02 -1.09 16 7 C -0.12 0.57 7.16 31.12 0.22 0.79 16 8 C 0.13 -0.47 4.24 45.52 0.19 -0.28 16 9 H 0.11 -0.10 7.46 -2.39 -0.02 -0.12 16 10 N -0.71 3.40 5.35 -440.03 -2.36 1.04 16 11 C 0.52 0.12 7.82 87.66 0.69 0.80 16 12 O -0.57 -5.49 15.63 -3.04 -0.05 -5.54 16 13 C -0.10 0.45 5.83 29.10 0.17 0.62 16 14 C -0.07 -0.17 4.37 -19.87 -0.09 -0.25 16 15 C -0.11 -0.33 9.70 22.27 0.22 -0.11 16 16 C -0.13 -0.57 8.67 22.27 0.19 -0.37 16 17 C -0.09 -0.54 5.38 -19.86 -0.11 -0.65 16 18 C -0.09 -0.23 2.79 71.24 0.20 -0.04 16 19 O -0.56 -2.64 12.81 -148.98 -1.91 -4.55 16 20 Si 0.76 0.43 29.85 68.60 2.05 2.48 16 21 C -0.11 -0.66 9.69 22.27 0.22 -0.45 16 22 C -0.12 -0.47 9.70 22.27 0.22 -0.25 16 23 C -0.13 0.53 7.43 31.12 0.23 0.76 16 24 H 0.13 -0.90 8.14 -2.38 -0.02 -0.92 16 25 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 26 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 27 H 0.10 -0.33 7.41 -2.39 -0.02 -0.35 16 28 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 29 H 0.42 -4.18 8.73 -92.71 -0.81 -4.98 16 30 H 0.13 -1.17 8.09 -2.38 -0.02 -1.19 16 31 H 0.13 -1.24 8.08 -2.39 -0.02 -1.26 16 32 H 0.14 -0.23 8.06 -2.91 -0.02 -0.26 16 33 H 0.14 0.16 4.87 -2.91 -0.01 0.14 16 34 H 0.09 -0.06 7.96 -2.38 -0.02 -0.07 16 35 H 0.39 -1.41 8.74 -74.06 -0.65 -2.06 16 36 H -0.28 -1.14 7.11 99.48 0.71 -0.43 16 37 H -0.30 -2.10 7.05 99.48 0.70 -1.40 16 38 H 0.13 0.57 8.06 -2.91 -0.02 0.55 16 39 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 40 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.09 -0.35 8.09 -2.39 -0.02 -0.37 16 Total: 0.00 -24.33 351.55 1.21 -23.13 By element: Atomic # 1 Polarization: -14.64 SS G_CDS: -0.36 Total: -15.00 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 4.03 Total: 3.78 kcal Atomic # 7 Polarization: 3.40 SS G_CDS: -2.36 Total: 1.04 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -2.16 Total: -15.43 kcal Atomic # 14 Polarization: 0.43 SS G_CDS: 2.05 Total: 2.48 kcal Total: -24.33 1.21 -23.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_12335836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.933 kcal (2) G-P(sol) polarization free energy of solvation -24.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds