Wall clock time and date at job start Sat Mar 6 2021 15:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 117.00287 * 2 1 4 4 O 1.20826 * 119.99712 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00294 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.90678 * 48.74911 * 5 3 2 7 7 C 1.53778 * 113.61595 * 179.97438 * 5 3 2 8 8 C 1.53777 * 87.07876 * 139.98179 * 7 5 3 9 9 H 1.08998 * 113.61716 * 89.20304 * 8 7 5 10 10 N 1.46506 * 113.61280 * 220.01941 * 8 7 5 11 11 C 1.34775 * 119.99937 * 204.99648 * 10 8 7 12 12 O 1.21590 * 120.00420 * 0.02562 * 11 10 8 13 13 C 1.47581 * 119.99828 * 180.02562 * 11 10 8 14 14 C 1.40199 * 119.83455 * 0.02562 * 13 11 10 15 15 C 1.36227 * 120.37734 * 180.02562 * 14 13 11 16 16 C 1.39867 * 119.96129 * 359.97438 * 15 14 13 17 17 C 1.46263 * 133.83742 * 179.97438 * 16 15 14 18 18 C 1.50699 * 126.48358 * 359.97324 * 17 16 15 19 19 O 1.42901 * 109.46830 * 285.00200 * 18 17 16 20 20 Si 1.86298 * 109.46950 * 165.00638 * 18 17 16 21 21 C 1.34459 * 107.03417 * 180.24089 * 17 16 15 22 22 N 1.36566 * 109.98423 * 359.59808 * 21 17 16 23 23 C 1.37828 * 109.86200 * 0.41681 * 22 21 17 24 24 C 1.38645 * 133.38962 * 179.73514 * 23 22 21 25 25 C 1.53780 * 113.61186 * 277.50240 * 5 3 2 26 26 H 1.08992 * 109.47640 * 59.99603 * 1 2 3 27 27 H 1.08999 * 109.47384 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46548 * 299.99558 * 1 2 3 29 29 H 1.08997 * 113.60934 * 25.43645 * 7 5 3 30 30 H 1.08993 * 113.69190 * 254.54384 * 7 5 3 31 31 H 0.97001 * 120.00315 * 25.00414 * 10 8 7 32 32 H 1.08004 * 119.80894 * 0.02562 * 14 13 11 33 33 H 1.08005 * 120.01646 * 179.97438 * 15 14 13 34 34 H 1.08991 * 109.47351 * 45.00348 * 18 17 16 35 35 H 0.96708 * 114.00246 * 299.99864 * 19 18 17 36 36 H 1.48506 * 109.99834 * 180.02562 * 20 18 17 37 37 H 1.48502 * 110.00011 * 301.31529 * 20 18 17 38 38 H 1.07996 * 125.00632 * 179.75408 * 21 17 16 39 39 H 0.97003 * 125.07143 * 180.19854 * 22 21 17 40 40 H 1.08003 * 120.16140 * 359.97438 * 24 23 22 41 41 H 1.08994 * 113.61960 * 105.47410 * 25 5 3 42 42 H 1.09000 * 113.61727 * 334.55967 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0244 0.6361 -0.7558 7 6 4.1078 2.7142 -0.0011 8 6 5.1814 2.2269 0.9861 9 1 6.0816 1.8495 0.5011 10 7 5.4709 3.1835 2.0574 11 6 6.6691 3.1622 2.6742 12 8 7.5100 2.3495 2.3412 13 6 6.9605 4.1254 3.7537 14 6 5.9882 5.0606 4.1353 15 6 6.2455 5.9550 5.1300 16 6 7.4856 5.9427 5.7768 17 6 8.0748 6.7391 6.8529 18 6 7.4153 7.8755 7.5910 19 8 7.3858 9.0334 6.7541 20 14 8.3798 8.2529 9.1395 21 6 9.3183 6.2692 7.0551 22 7 9.5697 5.2321 6.2029 23 6 8.4704 5.0066 5.4027 24 6 8.1999 4.0997 4.3895 25 6 4.1916 1.1231 1.3961 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.4175 3.4404 0.4279 30 1 4.5106 3.0302 -0.9633 31 1 4.8002 3.8320 2.3229 32 1 5.0297 5.0719 3.6377 33 1 5.4924 6.6733 5.4189 34 1 6.3967 7.5934 7.8571 35 1 8.2598 9.3416 6.4779 36 1 7.7393 9.3717 9.8768 37 1 8.4451 7.0472 10.0038 38 1 10.0147 6.6536 7.7856 39 1 10.3994 4.7312 6.1641 40 1 8.9469 3.3780 4.0935 41 1 4.6621 0.1539 1.5610 42 1 3.5244 1.4143 2.2073 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10970304_12335838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:34:06 Heat of formation + Delta-G solvation = -59.880973 kcal Electronic energy + Delta-G solvation = -27024.549831 eV Core-core repulsion = 22937.829669 eV Total energy + Delta-G solvation = -4086.720162 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.48998 -41.92889 -40.81063 -39.24805 -37.85549 -37.45167 -37.27501 -34.57094 -33.25111 -30.75035 -30.68753 -29.31174 -27.04306 -26.91696 -26.46753 -24.65995 -23.62545 -22.39336 -21.49337 -20.88427 -20.62938 -19.37948 -18.94785 -18.28550 -17.97557 -17.53257 -17.35401 -16.96636 -16.77102 -16.32566 -16.17247 -15.79183 -15.58630 -15.52624 -15.12972 -14.84579 -14.72800 -14.45101 -14.38921 -14.18178 -14.01169 -13.69444 -13.55001 -13.14425 -13.03372 -12.63967 -12.55471 -12.33220 -12.30958 -12.23009 -11.91963 -11.85540 -11.78348 -11.35552 -10.90523 -10.75319 -10.35590 -10.10890 -9.35554 -8.81441 -5.10648 -0.26581 0.39764 1.15547 1.28342 1.36542 1.61463 1.63899 1.91021 1.96966 1.99372 2.27427 2.92179 3.18067 3.26263 3.54461 3.56490 3.61513 3.68459 3.73399 3.76257 3.86222 3.97925 4.10435 4.16258 4.23715 4.30580 4.39577 4.42721 4.48642 4.51820 4.55574 4.56626 4.59759 4.72961 4.75243 4.81196 4.98366 5.03596 5.23615 5.37388 5.42192 5.43900 5.52306 5.60963 5.98552 6.36006 6.46987 6.65037 6.73267 7.21366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.505 6.505 5 C -0.109 4.109 6 H 0.132 0.868 7 C -0.127 4.127 8 C 0.126 3.874 9 H 0.126 0.874 10 N -0.716 5.716 11 C 0.566 3.434 12 O -0.537 6.537 13 C -0.123 4.123 14 C -0.113 4.113 15 C -0.073 4.073 16 C -0.063 4.063 17 C -0.211 4.211 18 C -0.030 4.030 19 O -0.542 6.542 20 Si 0.685 3.315 21 C 0.077 3.923 22 N -0.584 5.584 23 C 0.081 3.919 24 C -0.055 4.055 25 C -0.134 4.134 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.403 0.597 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.377 0.623 36 H -0.255 1.255 37 H -0.256 1.256 38 H 0.179 0.821 39 H 0.422 0.578 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 0.415 1.216 2.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.315 3.685 4 O -0.392 6.392 5 C -0.129 4.129 6 H 0.150 0.850 7 C -0.165 4.165 8 C 0.021 3.979 9 H 0.144 0.856 10 N -0.367 5.367 11 C 0.355 3.645 12 O -0.415 6.415 13 C -0.127 4.127 14 C -0.133 4.133 15 C -0.091 4.091 16 C -0.068 4.068 17 C -0.219 4.219 18 C -0.141 4.141 19 O -0.347 6.347 20 Si 0.587 3.413 21 C -0.051 4.051 22 N -0.186 5.186 23 C -0.025 4.025 24 C -0.077 4.077 25 C -0.173 4.173 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.240 0.760 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.224 0.776 36 H -0.179 1.179 37 H -0.181 1.181 38 H 0.196 0.804 39 H 0.260 0.740 40 H 0.154 0.846 41 H 0.109 0.891 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.523 0.038 1.957 3.193 hybrid contribution -0.745 -0.291 -0.199 0.824 sum 1.778 -0.253 1.758 2.513 Atomic orbital electron populations 1.23325 0.75933 1.04031 1.02702 1.86521 1.23724 1.33287 1.83769 1.23482 0.91581 0.81424 0.72041 1.90683 1.66985 1.36431 1.45120 1.22312 0.87675 1.01032 1.01847 0.85006 1.23385 0.97158 0.94918 1.01043 1.22454 0.97850 0.89523 0.88058 0.85646 1.45838 1.16375 1.37020 1.37482 1.18190 0.81656 0.83230 0.81461 1.90791 1.46485 1.39124 1.65062 1.19410 0.95169 0.98977 0.99153 1.20690 0.98619 0.95656 0.98334 1.20204 0.95355 0.98404 0.95162 1.19181 0.94087 0.96173 0.97365 1.20738 0.95254 1.03139 1.02753 1.24335 1.04613 0.83930 1.01266 1.86510 1.34223 1.43599 1.70358 0.95282 0.88180 0.81399 0.76489 1.21750 0.97147 0.90562 0.95684 1.41719 1.14864 1.30600 1.31431 1.18076 0.88467 0.99486 0.96503 1.20074 0.96777 0.97321 0.93494 1.23471 0.97996 1.01261 0.94586 0.91707 0.87830 0.91782 0.87866 0.89183 0.76010 0.85644 0.85210 0.87147 0.77576 1.17907 1.18102 0.80430 0.73990 0.84578 0.89108 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.54 10.57 -39.27 -0.41 -0.95 16 3 C 0.47 0.80 7.48 36.01 0.27 1.07 16 4 O -0.50 -2.20 15.65 -18.75 -0.29 -2.49 16 5 C -0.11 0.12 4.26 -90.96 -0.39 -0.27 16 6 H 0.13 -0.37 8.14 -51.93 -0.42 -0.80 16 7 C -0.13 0.18 7.16 -25.92 -0.19 0.00 16 8 C 0.13 -0.09 4.24 -67.09 -0.28 -0.38 16 9 H 0.13 0.00 7.46 -51.93 -0.39 -0.38 16 10 N -0.72 0.12 5.30 -54.02 -0.29 -0.17 16 11 C 0.57 1.47 7.76 -12.45 -0.10 1.37 16 12 O -0.54 -3.13 15.91 5.29 0.08 -3.05 16 13 C -0.12 -0.23 5.87 -104.95 -0.62 -0.84 16 14 C -0.11 -0.05 9.46 -39.57 -0.37 -0.42 16 15 C -0.07 -0.09 10.03 -39.70 -0.40 -0.48 16 16 C -0.06 -0.11 6.35 -105.04 -0.67 -0.77 16 17 C -0.21 0.02 5.57 -102.74 -0.57 -0.56 16 18 C -0.03 0.02 3.06 36.01 0.11 0.13 16 19 O -0.54 -0.05 12.88 -35.23 -0.45 -0.50 16 20 Si 0.69 -1.38 30.76 -169.99 -5.23 -6.61 16 21 C 0.08 -0.17 10.43 -16.78 -0.17 -0.34 16 22 N -0.58 0.91 6.07 -10.68 -0.06 0.85 16 23 C 0.08 0.10 7.26 -84.00 -0.61 -0.51 16 24 C -0.06 -0.10 9.61 -39.03 -0.37 -0.48 16 25 C -0.13 0.15 7.43 -25.90 -0.19 -0.04 16 26 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 27 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 28 H 0.06 -0.03 8.13 -51.92 -0.42 -0.45 16 29 H 0.10 -0.08 7.41 -51.93 -0.38 -0.46 16 30 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 31 H 0.40 -0.88 6.72 -40.82 -0.27 -1.15 16 32 H 0.13 -0.28 6.36 -52.48 -0.33 -0.61 16 33 H 0.13 0.02 8.06 -52.48 -0.42 -0.40 16 34 H 0.11 0.03 7.96 -51.93 -0.41 -0.39 16 35 H 0.38 -1.44 8.70 45.56 0.40 -1.04 16 36 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 37 H -0.26 -0.13 7.11 56.52 0.40 0.27 16 38 H 0.18 -1.05 6.35 -52.49 -0.33 -1.39 16 39 H 0.42 -1.82 8.96 -40.82 -0.37 -2.19 16 40 H 0.14 0.22 7.62 -52.48 -0.40 -0.18 16 41 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 42 H 0.09 -0.07 8.09 -51.93 -0.42 -0.49 16 LS Contribution 360.41 15.07 5.43 5.43 Total: 0.00 -11.18 360.41 -9.79 -20.97 By element: Atomic # 1 Polarization: -6.92 SS G_CDS: -5.07 Total: -12.00 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -3.49 Total: -1.48 kcal Atomic # 7 Polarization: 1.03 SS G_CDS: -0.35 Total: 0.68 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -1.08 Total: -6.99 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: -5.23 Total: -6.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -11.18 -9.79 -20.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_12335838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.914 kcal (2) G-P(sol) polarization free energy of solvation -11.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds