Wall clock time and date at job start Sat Mar 6 2021 15:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 117.00287 * 2 1 4 4 O 1.20826 * 119.99712 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00294 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.90678 * 48.74911 * 5 3 2 7 7 C 1.53778 * 113.61595 * 179.97438 * 5 3 2 8 8 C 1.53777 * 87.07876 * 139.98179 * 7 5 3 9 9 H 1.08998 * 113.61716 * 89.20304 * 8 7 5 10 10 N 1.46506 * 113.61280 * 220.01941 * 8 7 5 11 11 C 1.34775 * 119.99937 * 204.99648 * 10 8 7 12 12 O 1.21590 * 120.00420 * 0.02562 * 11 10 8 13 13 C 1.47581 * 119.99828 * 180.02562 * 11 10 8 14 14 C 1.40199 * 119.83455 * 0.02562 * 13 11 10 15 15 C 1.36227 * 120.37734 * 180.02562 * 14 13 11 16 16 C 1.39867 * 119.96129 * 359.97438 * 15 14 13 17 17 C 1.46263 * 133.83742 * 179.97438 * 16 15 14 18 18 C 1.50699 * 126.48358 * 359.97324 * 17 16 15 19 19 O 1.42901 * 109.46830 * 285.00200 * 18 17 16 20 20 Si 1.86298 * 109.46950 * 165.00638 * 18 17 16 21 21 C 1.34459 * 107.03417 * 180.24089 * 17 16 15 22 22 N 1.36566 * 109.98423 * 359.59808 * 21 17 16 23 23 C 1.37828 * 109.86200 * 0.41681 * 22 21 17 24 24 C 1.38645 * 133.38962 * 179.73514 * 23 22 21 25 25 C 1.53780 * 113.61186 * 277.50240 * 5 3 2 26 26 H 1.08992 * 109.47640 * 59.99603 * 1 2 3 27 27 H 1.08999 * 109.47384 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46548 * 299.99558 * 1 2 3 29 29 H 1.08997 * 113.60934 * 25.43645 * 7 5 3 30 30 H 1.08993 * 113.69190 * 254.54384 * 7 5 3 31 31 H 0.97001 * 120.00315 * 25.00414 * 10 8 7 32 32 H 1.08004 * 119.80894 * 0.02562 * 14 13 11 33 33 H 1.08005 * 120.01646 * 179.97438 * 15 14 13 34 34 H 1.08991 * 109.47351 * 45.00348 * 18 17 16 35 35 H 0.96708 * 114.00246 * 299.99864 * 19 18 17 36 36 H 1.48506 * 109.99834 * 180.02562 * 20 18 17 37 37 H 1.48502 * 110.00011 * 301.31529 * 20 18 17 38 38 H 1.07996 * 125.00632 * 179.75408 * 21 17 16 39 39 H 0.97003 * 125.07143 * 180.19854 * 22 21 17 40 40 H 1.08003 * 120.16140 * 359.97438 * 24 23 22 41 41 H 1.08994 * 113.61960 * 105.47410 * 25 5 3 42 42 H 1.09000 * 113.61727 * 334.55967 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0244 0.6361 -0.7558 7 6 4.1078 2.7142 -0.0011 8 6 5.1814 2.2269 0.9861 9 1 6.0816 1.8495 0.5011 10 7 5.4709 3.1835 2.0574 11 6 6.6691 3.1622 2.6742 12 8 7.5100 2.3495 2.3412 13 6 6.9605 4.1254 3.7537 14 6 5.9882 5.0606 4.1353 15 6 6.2455 5.9550 5.1300 16 6 7.4856 5.9427 5.7768 17 6 8.0748 6.7391 6.8529 18 6 7.4153 7.8755 7.5910 19 8 7.3858 9.0334 6.7541 20 14 8.3798 8.2529 9.1395 21 6 9.3183 6.2692 7.0551 22 7 9.5697 5.2321 6.2029 23 6 8.4704 5.0066 5.4027 24 6 8.1999 4.0997 4.3895 25 6 4.1916 1.1231 1.3961 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.4175 3.4404 0.4279 30 1 4.5106 3.0302 -0.9633 31 1 4.8002 3.8320 2.3229 32 1 5.0297 5.0719 3.6377 33 1 5.4924 6.6733 5.4189 34 1 6.3967 7.5934 7.8571 35 1 8.2598 9.3416 6.4779 36 1 7.7393 9.3717 9.8768 37 1 8.4451 7.0472 10.0038 38 1 10.0147 6.6536 7.7856 39 1 10.3994 4.7312 6.1641 40 1 8.9469 3.3780 4.0935 41 1 4.6621 0.1539 1.5610 42 1 3.5244 1.4143 2.2073 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_12335838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:34:05 Heat of formation + Delta-G solvation = -61.811752 kcal Electronic energy + Delta-G solvation = -27024.633556 eV Core-core repulsion = 22937.829669 eV Total energy + Delta-G solvation = -4086.803887 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.46183 -41.99399 -40.93406 -39.28405 -37.85980 -37.47782 -37.39454 -34.67237 -33.23655 -30.75857 -30.69232 -29.31425 -27.04193 -26.84351 -26.40342 -24.68743 -23.65047 -22.44394 -21.56848 -20.86591 -20.59959 -19.36466 -19.01076 -18.27467 -18.06035 -17.52207 -17.41147 -16.96683 -16.83814 -16.33969 -16.13100 -15.87997 -15.56725 -15.52326 -15.10786 -14.90552 -14.75080 -14.47577 -14.40766 -14.23013 -14.01293 -13.65610 -13.54666 -13.10935 -13.01582 -12.65719 -12.53250 -12.34302 -12.27866 -12.26870 -11.92488 -11.86820 -11.82222 -11.44571 -11.10555 -10.78173 -10.29035 -10.18339 -9.36476 -8.78487 -4.97089 -0.32645 0.36272 1.04312 1.39149 1.42317 1.62856 1.71878 1.89002 1.97472 2.06191 2.29860 2.85154 3.22785 3.31152 3.59161 3.63309 3.66276 3.73066 3.75776 3.89919 3.93173 4.01241 4.11562 4.24581 4.27120 4.30658 4.45434 4.49274 4.54914 4.57859 4.60006 4.62136 4.67264 4.77526 4.82063 4.91264 4.96426 5.06004 5.20375 5.31396 5.40851 5.42608 5.52665 5.61751 5.98040 6.42405 6.55986 6.63159 6.91255 7.09657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.104 4.104 6 H 0.153 0.847 7 C -0.120 4.120 8 C 0.124 3.876 9 H 0.120 0.880 10 N -0.704 5.704 11 C 0.565 3.435 12 O -0.576 6.576 13 C -0.139 4.139 14 C -0.109 4.109 15 C -0.088 4.088 16 C -0.082 4.082 17 C -0.236 4.236 18 C -0.040 4.040 19 O -0.562 6.562 20 Si 0.796 3.204 21 C 0.098 3.902 22 N -0.576 5.576 23 C 0.066 3.934 24 C -0.064 4.064 25 C -0.130 4.130 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.413 0.587 32 H 0.148 0.852 33 H 0.134 0.866 34 H 0.095 0.905 35 H 0.393 0.607 36 H -0.307 1.307 37 H -0.285 1.285 38 H 0.220 0.780 39 H 0.436 0.564 40 H 0.132 0.868 41 H 0.094 0.906 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.504 0.510 1.522 3.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.124 4.124 6 H 0.171 0.829 7 C -0.158 4.158 8 C 0.019 3.981 9 H 0.137 0.863 10 N -0.355 5.355 11 C 0.355 3.645 12 O -0.457 6.457 13 C -0.143 4.143 14 C -0.128 4.128 15 C -0.107 4.107 16 C -0.087 4.087 17 C -0.243 4.243 18 C -0.150 4.150 19 O -0.370 6.370 20 Si 0.702 3.298 21 C -0.032 4.032 22 N -0.180 5.180 23 C -0.041 4.041 24 C -0.085 4.085 25 C -0.169 4.169 26 H 0.081 0.919 27 H 0.146 0.854 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.252 0.748 32 H 0.165 0.835 33 H 0.152 0.848 34 H 0.112 0.888 35 H 0.243 0.757 36 H -0.235 1.235 37 H -0.212 1.212 38 H 0.236 0.764 39 H 0.276 0.724 40 H 0.150 0.850 41 H 0.112 0.888 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.330 0.118 2.219 4.003 hybrid contribution -1.058 -0.299 -0.259 1.130 sum 2.271 -0.181 1.960 3.006 Atomic orbital electron populations 1.23527 0.75042 1.05599 1.02465 1.86523 1.24769 1.33215 1.83478 1.23983 0.92487 0.81006 0.70953 1.90666 1.67868 1.37344 1.46726 1.22428 0.85941 1.01636 1.02353 0.82919 1.23338 0.96479 0.94699 1.01251 1.22480 0.97813 0.89698 0.88079 0.86255 1.45789 1.15763 1.36983 1.36993 1.18345 0.81848 0.82842 0.81492 1.90761 1.47795 1.40772 1.66407 1.19463 0.95768 0.99569 0.99516 1.20877 0.99151 0.94794 0.97990 1.20378 0.95699 0.98916 0.95671 1.19580 0.94445 0.96701 0.98015 1.20856 0.96287 1.03946 1.03259 1.24553 1.04344 0.83801 1.02270 1.86465 1.35993 1.43839 1.70672 0.94063 0.86089 0.76791 0.72869 1.22364 0.96884 0.89019 0.94906 1.41813 1.14756 1.30656 1.30727 1.18121 0.89510 0.99500 0.96934 1.20153 0.96895 0.97528 0.93926 1.23434 0.97638 1.01242 0.94556 0.91940 0.85421 0.92068 0.88423 0.88083 0.74835 0.83461 0.84807 0.88765 0.75696 1.23486 1.21172 0.76393 0.72390 0.85008 0.88754 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.36 -1.11 10.57 -51.46 -0.54 -1.65 16 3 C 0.47 1.73 7.48 71.24 0.53 2.27 16 4 O -0.54 -5.06 15.65 21.96 0.34 -4.71 16 5 C -0.10 0.25 4.26 -11.01 -0.05 0.20 16 6 H 0.15 -1.01 8.14 -2.39 -0.02 -1.03 16 7 C -0.12 0.35 7.16 31.12 0.22 0.57 16 8 C 0.12 -0.14 4.24 45.53 0.19 0.05 16 9 H 0.12 0.08 7.46 -2.39 -0.02 0.06 16 10 N -0.70 -0.22 5.30 -443.08 -2.35 -2.57 16 11 C 0.57 3.66 7.76 86.71 0.67 4.33 16 12 O -0.58 -7.71 15.91 -4.00 -0.06 -7.78 16 13 C -0.14 -0.69 5.87 -20.08 -0.12 -0.81 16 14 C -0.11 -0.18 9.46 22.28 0.21 0.03 16 15 C -0.09 -0.30 10.03 22.20 0.22 -0.07 16 16 C -0.08 -0.33 6.35 -20.14 -0.13 -0.46 16 17 C -0.24 0.11 5.57 -18.64 -0.10 0.00 16 18 C -0.04 0.04 3.06 71.24 0.22 0.26 16 19 O -0.56 -0.15 12.88 -148.98 -1.92 -2.07 16 20 Si 0.80 -3.82 30.76 68.60 2.11 -1.71 16 21 C 0.10 -0.58 10.43 83.09 0.87 0.29 16 22 N -0.58 2.25 6.07 -187.71 -1.14 1.11 16 23 C 0.07 0.19 7.26 38.96 0.28 0.48 16 24 C -0.06 -0.33 9.61 22.63 0.22 -0.11 16 25 C -0.13 0.27 7.43 31.14 0.23 0.50 16 26 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 27 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 28 H 0.06 -0.02 8.13 -2.38 -0.02 -0.04 16 29 H 0.10 -0.13 7.41 -2.39 -0.02 -0.14 16 30 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.41 -1.67 6.72 -92.71 -0.62 -2.29 16 32 H 0.15 -0.61 6.36 -2.91 -0.02 -0.63 16 33 H 0.13 0.22 8.06 -2.91 -0.02 0.19 16 34 H 0.09 0.15 7.96 -2.39 -0.02 0.13 16 35 H 0.39 -3.23 8.70 -74.05 -0.64 -3.87 16 36 H -0.31 -1.20 7.11 99.48 0.71 -0.50 16 37 H -0.28 0.00 7.11 99.48 0.71 0.71 16 38 H 0.22 -3.30 6.35 -2.91 -0.02 -3.32 16 39 H 0.44 -4.22 8.96 -92.71 -0.83 -5.05 16 40 H 0.13 0.67 7.62 -2.91 -0.02 0.65 16 41 H 0.09 -0.24 8.14 -2.39 -0.02 -0.25 16 42 H 0.09 -0.11 8.09 -2.39 -0.02 -0.13 16 Total: 0.00 -27.71 360.41 0.15 -27.56 By element: Atomic # 1 Polarization: -15.93 SS G_CDS: -0.96 Total: -16.89 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 4.67 Total: 8.70 kcal Atomic # 7 Polarization: 2.04 SS G_CDS: -3.49 Total: -1.45 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -2.18 Total: -16.21 kcal Atomic # 14 Polarization: -3.82 SS G_CDS: 2.11 Total: -1.71 kcal Total: -27.71 0.15 -27.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_12335838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.253 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds