Wall clock time and date at job start Sat Mar 6 2021 15:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47398 * 2 1 4 4 C 1.53005 * 109.47112 * 295.00192 * 3 2 1 5 5 C 1.53000 * 109.47185 * 175.00055 * 3 2 1 6 6 C 1.50700 * 109.47147 * 185.15985 * 5 3 2 7 7 O 1.21286 * 120.00013 * 34.92171 * 6 5 3 8 8 N 1.34777 * 120.00040 * 214.92521 * 6 5 3 9 9 C 1.46504 * 120.00059 * 174.84488 * 8 6 5 10 10 H 1.09005 * 112.84922 * 336.19629 * 9 8 6 11 11 C 1.53784 * 113.61307 * 107.49721 * 9 8 6 12 12 C 1.53780 * 87.07650 * 139.98194 * 11 9 8 13 13 H 1.09002 * 113.69182 * 89.13111 * 12 11 9 14 14 C 1.50705 * 113.61398 * 220.01856 * 12 11 9 15 15 O 1.20823 * 120.00000 * 97.50242 * 14 12 11 16 16 O 1.34226 * 119.99995 * 277.49884 * 14 12 11 17 17 C 1.45203 * 116.99529 * 179.97438 * 16 14 12 18 18 C 1.53773 * 113.61345 * 204.99853 * 9 8 6 19 19 N 1.46498 * 109.47342 * 305.15613 * 5 3 2 20 20 C 1.36337 * 125.63667 * 299.69871 * 19 5 3 21 21 C 1.34859 * 108.21627 * 179.82438 * 20 19 5 22 22 C 1.40889 * 107.41625 * 0.42349 * 21 20 19 23 23 C 1.34853 * 107.41587 * 359.73701 * 22 21 20 24 24 C 1.50702 * 125.88768 * 179.97438 * 23 22 21 25 25 O 1.42896 * 109.47212 * 150.02013 * 24 23 22 26 26 Si 1.86301 * 109.47357 * 30.01526 * 24 23 22 27 27 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47114 * 300.00030 * 1 2 3 29 29 H 1.09002 * 109.46890 * 59.99528 * 1 2 3 30 30 H 1.08999 * 109.47114 * 239.99970 * 2 1 3 31 31 H 1.08999 * 109.47381 * 120.00361 * 2 1 3 32 32 H 1.08998 * 109.46988 * 54.99966 * 3 2 1 33 33 H 1.08999 * 109.46964 * 55.35464 * 4 3 2 34 34 H 1.09005 * 109.46889 * 175.34985 * 4 3 2 35 35 H 1.08994 * 109.47229 * 295.34931 * 4 3 2 36 36 H 1.08998 * 109.47029 * 65.16366 * 5 3 2 37 37 H 0.96995 * 119.99897 * 354.84450 * 8 6 5 38 38 H 1.09001 * 113.61143 * 25.43890 * 11 9 8 39 39 H 1.08993 * 113.62030 * 254.53126 * 11 9 8 40 40 H 1.09002 * 109.47168 * 60.01001 * 17 16 14 41 41 H 1.09002 * 109.46859 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.47376 * 300.00003 * 17 16 14 43 43 H 1.09003 * 113.61279 * 105.47570 * 18 9 8 44 44 H 1.08999 * 113.69356 * 334.57855 * 18 9 8 45 45 H 1.07996 * 125.89274 * 0.02562 * 20 19 5 46 46 H 1.08001 * 126.29017 * 180.15592 * 21 20 19 47 47 H 1.07994 * 126.28893 * 179.73290 * 22 21 20 48 48 H 1.09001 * 109.46695 * 270.01982 * 24 23 22 49 49 H 0.96698 * 113.99749 * 300.00005 * 25 24 23 50 50 H 1.48507 * 109.99458 * 58.68511 * 26 24 23 51 51 H 1.48494 * 110.00046 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6353 2.1265 -1.3074 5 6 3.5649 1.4442 0.1257 6 6 4.0568 2.8630 0.2532 7 8 3.3945 3.6828 0.8533 8 7 5.2327 3.2208 -0.2998 9 6 5.6577 4.6226 -0.2743 10 1 4.8226 5.3164 -0.1771 11 6 6.8086 4.8995 0.7074 12 6 7.3925 5.8355 -0.3641 13 1 7.0335 6.8621 -0.2915 14 6 8.8916 5.7474 -0.4906 15 8 9.3858 5.0577 -1.3507 16 8 9.6778 6.4352 0.3523 17 6 11.1125 6.3024 0.1721 18 6 6.6359 4.9902 -1.4024 19 7 3.9579 0.6826 1.3139 20 6 3.5981 0.9708 2.5970 21 6 4.1488 0.0442 3.4074 22 6 4.8831 -0.8430 2.5958 23 6 4.7484 -0.4281 1.3198 24 6 5.3658 -1.0796 0.1092 25 8 4.5260 -0.8662 -1.0270 26 14 5.5470 -2.9088 0.4128 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6055 1.9815 0.8418 33 1 0.5556 2.0525 -1.4370 34 1 1.9260 3.1765 -1.2731 35 1 2.1359 1.6380 -2.1432 36 1 4.0031 0.9861 -0.7610 37 1 5.7975 2.5502 -0.7146 38 1 7.4293 4.0267 0.9098 39 1 6.4944 5.4162 1.6141 40 1 11.3862 6.6422 -0.8267 41 1 11.6297 6.9077 0.9166 42 1 11.3985 5.2574 0.2916 43 1 6.1822 5.5802 -2.1987 44 1 7.2100 4.1431 -1.7777 45 1 2.9765 1.7966 2.9100 46 1 4.0491 -0.0059 4.4816 47 1 5.4498 -1.6981 2.9336 48 1 6.3472 -0.6434 -0.0773 49 1 3.6348 -1.2290 -0.9310 50 1 4.2196 -3.5098 0.6998 51 1 6.1542 -3.5629 -0.7740 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_12360566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:34:27 Heat of formation + Delta-G solvation = -72.820118 kcal Electronic energy + Delta-G solvation = -33206.329911 eV Core-core repulsion = 28881.576611 eV Total energy + Delta-G solvation = -4324.753300 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.192 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.83122 -41.99825 -40.86790 -39.37571 -38.05453 -37.58352 -37.36104 -34.79626 -33.36990 -31.09310 -30.83704 -29.48574 -27.93927 -26.90122 -26.74332 -26.04646 -25.22145 -22.84249 -22.10390 -21.83474 -20.96220 -20.85519 -20.30022 -19.07923 -18.85099 -18.20380 -18.01029 -17.48086 -17.47113 -16.89506 -16.55642 -16.34285 -16.01579 -15.76610 -15.50947 -15.34654 -14.98768 -14.70605 -14.49410 -14.42910 -14.21382 -14.18413 -14.08486 -13.70959 -13.57630 -13.54599 -13.21284 -13.14609 -13.04439 -12.99143 -12.65141 -12.59503 -12.40820 -12.37523 -12.08221 -11.95636 -11.88816 -11.86840 -11.75624 -11.63697 -11.48687 -11.16846 -10.80675 -10.25939 -9.56258 -8.96417 -4.86530 0.94840 1.02564 1.04328 1.43787 1.60905 1.70606 1.91285 2.01429 2.09657 2.27820 3.06836 3.17258 3.24486 3.39948 3.44542 3.58111 3.64348 3.69140 3.79944 3.93987 3.98591 4.07823 4.23601 4.23694 4.26410 4.36072 4.41075 4.44824 4.49938 4.51177 4.55767 4.56266 4.58901 4.66334 4.67723 4.73068 4.76006 4.85363 4.90317 4.96977 4.98486 5.00957 5.08098 5.25014 5.28783 5.31538 5.35933 5.37937 5.39520 5.97505 6.18747 6.25763 6.30478 6.36117 6.60849 6.93539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.083 4.083 4 C -0.147 4.147 5 C 0.110 3.890 6 C 0.513 3.487 7 O -0.555 6.555 8 N -0.703 5.703 9 C 0.125 3.875 10 H 0.119 0.881 11 C -0.128 4.128 12 C -0.104 4.104 13 H 0.153 0.847 14 C 0.471 3.529 15 O -0.536 6.536 16 O -0.364 6.364 17 C 0.027 3.973 18 C -0.118 4.118 19 N -0.421 5.421 20 C -0.016 4.016 21 C -0.204 4.204 22 C -0.192 4.192 23 C -0.022 4.022 24 C -0.056 4.056 25 O -0.541 6.541 26 Si 0.788 3.212 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.152 0.848 37 H 0.413 0.587 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.127 0.873 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.151 0.849 46 H 0.145 0.855 47 H 0.167 0.833 48 H 0.136 0.864 49 H 0.381 0.619 50 H -0.292 1.292 51 H -0.293 1.293 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 -0.739 -0.207 2.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.103 4.103 4 C -0.205 4.205 5 C 0.005 3.995 6 C 0.298 3.702 7 O -0.432 6.432 8 N -0.353 5.353 9 C 0.020 3.980 10 H 0.137 0.863 11 C -0.167 4.167 12 C -0.123 4.123 13 H 0.170 0.830 14 C 0.316 3.684 15 O -0.425 6.425 16 O -0.280 6.280 17 C -0.066 4.066 18 C -0.156 4.156 19 N -0.099 5.099 20 C -0.145 4.145 21 C -0.228 4.228 22 C -0.216 4.216 23 C -0.132 4.132 24 C -0.165 4.165 25 O -0.350 6.350 26 Si 0.691 3.309 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.170 0.830 37 H 0.249 0.751 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.169 0.831 46 H 0.162 0.838 47 H 0.184 0.816 48 H 0.153 0.847 49 H 0.232 0.768 50 H -0.218 1.218 51 H -0.220 1.220 Dipole moment (debyes) X Y Z Total from point charges 1.774 -0.643 -0.825 2.060 hybrid contribution -0.542 0.328 -0.485 0.798 sum 1.232 -0.315 -1.311 1.826 Atomic orbital electron populations 1.21792 0.94809 1.02162 1.02156 1.21549 0.96895 0.94603 1.02157 1.21288 0.90740 0.98017 1.00212 1.21857 1.03083 0.99810 0.95731 1.22048 0.98146 0.88914 0.90379 1.20892 0.81038 0.90304 0.77971 1.90717 1.57247 1.53695 1.41552 1.45972 1.20414 1.10205 1.58752 1.22475 0.96088 0.83008 0.96414 0.86299 1.23379 0.96697 0.98767 0.97884 1.22428 0.85340 1.03931 1.00646 0.82984 1.23945 0.91393 0.75405 0.77702 1.90667 1.76968 1.39606 1.35270 1.86523 1.21217 1.64901 1.55321 1.23533 0.75495 1.03533 1.04049 1.23322 0.95430 1.00219 0.96604 1.43735 1.39216 1.21563 1.05355 1.21925 1.06343 1.03073 0.83188 1.21108 1.04006 0.97915 0.99782 1.20938 1.05990 1.03536 0.91181 1.21029 1.02478 0.92346 0.97353 1.24950 0.96215 1.12732 0.82572 1.86481 1.28407 1.80040 1.40111 0.93366 0.82999 0.70322 0.84173 0.92144 0.93306 0.91610 0.90621 0.92469 0.91306 0.90641 0.93538 0.90945 0.83047 0.75072 0.89603 0.89092 0.91921 0.85435 0.92000 0.87971 0.88495 0.83113 0.83760 0.81583 0.84688 0.76817 1.21815 1.22034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.20 9.67 71.98 0.70 0.90 16 2 C -0.11 0.17 4.82 30.59 0.15 0.31 16 3 C -0.08 -0.03 1.57 -10.79 -0.02 -0.05 16 4 C -0.15 0.16 8.79 71.98 0.63 0.79 16 5 C 0.11 0.02 2.00 44.25 0.09 0.11 16 6 C 0.51 1.63 5.90 87.66 0.52 2.14 16 7 O -0.56 -5.53 15.61 -3.05 -0.05 -5.57 16 8 N -0.70 0.90 5.35 -440.03 -2.36 -1.45 16 9 C 0.13 -0.27 4.21 45.52 0.19 -0.08 16 10 H 0.12 -0.07 7.53 -2.38 -0.02 -0.09 16 11 C -0.13 0.28 7.43 31.12 0.23 0.51 16 12 C -0.10 0.29 4.26 -11.01 -0.05 0.25 16 13 H 0.15 -1.05 8.14 -2.39 -0.02 -1.07 16 14 C 0.47 1.53 7.48 71.24 0.53 2.06 16 15 O -0.54 -4.75 15.65 21.97 0.34 -4.41 16 16 O -0.36 -0.97 10.57 -51.38 -0.54 -1.51 16 17 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 18 C -0.12 0.44 7.16 31.12 0.22 0.67 16 19 N -0.42 -0.67 1.57 -491.52 -0.77 -1.44 16 20 C -0.02 -0.07 10.47 83.22 0.87 0.80 16 21 C -0.20 -0.66 10.86 22.14 0.24 -0.42 16 22 C -0.19 -0.07 9.43 22.14 0.21 0.14 16 23 C -0.02 0.00 6.15 41.08 0.25 0.26 16 24 C -0.06 0.20 2.96 71.24 0.21 0.41 16 25 O -0.54 1.51 9.85 -148.98 -1.47 0.04 16 26 Si 0.79 -2.80 31.14 68.60 2.14 -0.66 16 27 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.06 -0.16 6.47 -2.39 -0.02 -0.18 16 30 H 0.08 -0.34 6.45 -2.39 -0.02 -0.35 16 31 H 0.06 0.08 7.18 -2.39 -0.02 0.07 16 32 H 0.07 0.36 7.60 -2.39 -0.02 0.34 16 33 H 0.07 -0.14 6.36 -2.39 -0.02 -0.16 16 34 H 0.05 0.09 7.37 -2.38 -0.02 0.08 16 35 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.15 -0.36 5.18 -2.39 -0.01 -0.37 16 37 H 0.41 -1.84 8.73 -92.71 -0.81 -2.65 16 38 H 0.09 -0.06 8.09 -2.39 -0.02 -0.08 16 39 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 40 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 41 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 43 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 44 H 0.10 -0.18 7.41 -2.39 -0.02 -0.20 16 45 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 46 H 0.14 0.16 8.06 -2.91 -0.02 0.14 16 47 H 0.17 -0.81 6.89 -2.91 -0.02 -0.83 16 48 H 0.14 -0.85 7.96 -2.39 -0.02 -0.87 16 49 H 0.38 -1.95 6.44 -74.06 -0.48 -2.43 16 50 H -0.29 -0.71 7.11 99.48 0.71 -0.01 16 51 H -0.29 -0.84 7.11 99.48 0.71 -0.14 16 Total: 0.00 -18.37 406.70 3.18 -15.19 By element: Atomic # 1 Polarization: -9.85 SS G_CDS: -0.30 Total: -10.15 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 6.18 Total: 9.96 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -3.12 Total: -2.89 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.71 Total: -11.45 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: 2.14 Total: -0.66 kcal Total: -18.37 3.18 -15.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_12360566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.628 kcal (2) G-P(sol) polarization free energy of solvation -18.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds