Wall clock time and date at job start Sat Mar 6 2021 15:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.09006 * 112.84935 * 311.19443 * 5 3 2 7 7 C 1.53777 * 113.61732 * 82.50319 * 5 3 2 8 8 C 1.53781 * 87.08387 * 139.98090 * 7 5 3 9 9 H 1.09002 * 113.61444 * 89.11389 * 8 7 5 10 10 N 1.46494 * 113.61808 * 220.02164 * 8 7 5 11 11 C 1.34774 * 120.00207 * 252.49899 * 10 8 7 12 12 O 1.21707 * 119.99909 * 359.97438 * 11 10 8 13 13 C 1.46423 * 120.00300 * 179.97438 * 11 10 8 14 14 C 1.34817 * 120.00143 * 179.97438 * 13 11 10 15 15 C 1.47206 * 120.00186 * 180.02562 * 14 13 11 16 16 C 1.39838 * 120.16701 * 359.71851 * 15 14 13 17 17 C 1.37890 * 119.82338 * 179.76742 * 16 15 14 18 18 C 1.38401 * 120.17362 * 0.49231 * 17 16 15 19 19 C 1.50701 * 119.82875 * 179.76302 * 18 17 16 20 20 O 1.42906 * 109.46883 * 120.02351 * 19 18 17 21 21 Si 1.86292 * 109.47338 * 0.02562 * 19 18 17 22 22 C 1.38403 * 120.34224 * 359.78576 * 18 17 16 23 23 C 1.37892 * 120.17020 * 359.95103 * 22 18 17 24 24 C 1.53778 * 113.61647 * 180.02562 * 5 3 2 25 25 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 26 26 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 27 27 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.09003 * 113.61478 * 254.53049 * 7 5 3 29 29 H 1.09004 * 113.61370 * 25.43532 * 7 5 3 30 30 H 0.97003 * 120.00490 * 72.49491 * 10 8 7 31 31 H 1.07996 * 120.00167 * 359.97438 * 13 11 10 32 32 H 1.08002 * 119.99919 * 359.97438 * 14 13 11 33 33 H 1.08006 * 120.08787 * 0.02562 * 16 15 14 34 34 H 1.08010 * 119.91550 * 180.25716 * 17 16 15 35 35 H 1.08999 * 109.47069 * 240.01710 * 19 18 17 36 36 H 0.96695 * 113.99589 * 179.97438 * 20 19 18 37 37 H 1.48505 * 109.99793 * 298.68039 * 21 19 18 38 38 H 1.48494 * 110.00404 * 59.99656 * 21 19 18 39 39 H 1.08001 * 119.91328 * 179.97438 * 22 18 17 40 40 H 1.07996 * 120.08388 * 180.02562 * 23 22 18 41 41 H 1.09003 * 113.61629 * 334.56623 * 24 5 3 42 42 H 1.09005 * 113.61754 * 105.38297 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0239 0.6362 0.7550 7 6 4.1906 1.1239 -1.3978 8 6 5.1807 2.2271 -0.9886 9 1 6.0806 1.8483 -0.5041 10 7 5.4693 3.1836 -2.0600 11 6 6.6670 3.1624 -2.6776 12 8 7.5090 2.3490 -2.3449 13 6 6.9553 4.1181 -3.7489 14 6 8.1536 4.0972 -4.3663 15 6 8.4437 5.0584 -5.4430 16 6 7.4767 5.9907 -5.8320 17 6 7.7577 6.8908 -6.8381 18 6 8.9892 6.8666 -7.4692 19 6 9.2861 7.8505 -8.5714 20 8 10.4128 8.6498 -8.2056 21 14 7.8057 8.9495 -8.8383 22 6 9.9493 5.9431 -7.0937 23 6 9.6853 5.0400 -6.0857 24 6 4.1077 2.7142 0.0001 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.6609 0.1546 -1.5634 29 1 3.5226 1.4154 -2.2083 30 1 4.7984 3.8321 -2.3250 31 1 6.2081 4.8396 -4.0444 32 1 8.9010 3.3759 -4.0706 33 1 6.5139 6.0083 -5.3430 34 1 7.0135 7.6143 -7.1369 35 1 9.5078 7.3096 -9.4914 36 1 10.6615 9.3066 -8.8703 37 1 6.6352 8.1335 -9.2501 38 1 7.4932 9.6925 -7.5912 39 1 10.9078 5.9301 -7.5912 40 1 10.4356 4.3203 -5.7936 41 1 3.4171 3.4408 -0.4280 42 1 4.5099 3.0290 0.9631 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_12360594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:34:31 Heat of formation + Delta-G solvation = -78.173496 kcal Electronic energy + Delta-G solvation = -24694.594248 eV Core-core repulsion = 20800.732915 eV Total energy + Delta-G solvation = -3893.861334 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.135 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.03137 -41.01813 -40.57298 -39.21717 -37.73318 -37.47091 -35.22518 -34.60909 -32.37380 -31.43660 -29.44653 -27.65150 -26.86761 -26.54348 -24.29171 -24.01565 -22.50796 -21.87833 -21.07931 -20.20530 -19.03221 -18.72325 -18.37617 -18.02426 -17.50930 -17.41160 -16.91022 -16.56530 -16.34271 -16.08632 -15.87982 -15.41111 -15.23702 -14.97988 -14.52741 -14.43988 -14.27338 -14.07248 -13.85848 -13.66596 -13.62433 -13.55236 -13.05669 -13.03583 -12.56195 -12.39692 -12.37489 -12.07832 -11.95500 -11.88853 -11.84632 -11.47007 -11.42924 -11.11022 -10.32951 -10.18376 -10.13222 -9.33747 -4.94965 -0.66126 0.22906 0.77696 1.02158 1.28982 1.62617 1.62948 1.95076 2.13202 2.18896 2.67291 3.20475 3.28727 3.35019 3.46816 3.61631 3.63907 3.72489 3.73144 3.87738 3.96994 4.09047 4.10903 4.20653 4.23011 4.25566 4.31180 4.45922 4.49340 4.54010 4.59551 4.65672 4.70479 4.78812 4.84932 4.88402 4.96156 5.02553 5.06336 5.25400 5.29488 5.34327 5.45471 5.48131 5.75858 6.44986 6.60870 6.88252 7.12282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.537 6.537 5 C -0.105 4.105 6 H 0.152 0.848 7 C -0.129 4.129 8 C 0.124 3.876 9 H 0.117 0.883 10 N -0.704 5.704 11 C 0.547 3.453 12 O -0.584 6.584 13 C -0.212 4.212 14 C -0.017 4.017 15 C -0.082 4.082 16 C -0.098 4.098 17 C -0.145 4.145 18 C -0.081 4.081 19 C -0.082 4.082 20 O -0.564 6.564 21 Si 0.773 3.227 22 C -0.102 4.102 23 C -0.096 4.096 24 C -0.119 4.119 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.416 0.584 31 H 0.156 0.844 32 H 0.132 0.868 33 H 0.151 0.849 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.404 0.596 37 H -0.287 1.287 38 H -0.297 1.297 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.098 0.902 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 1.672 -4.131 4.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.125 4.125 6 H 0.170 0.830 7 C -0.168 4.168 8 C 0.018 3.982 9 H 0.134 0.866 10 N -0.354 5.354 11 C 0.337 3.663 12 O -0.467 6.467 13 C -0.233 4.233 14 C -0.036 4.036 15 C -0.082 4.082 16 C -0.115 4.115 17 C -0.163 4.163 18 C -0.081 4.081 19 C -0.192 4.192 20 O -0.374 6.374 21 Si 0.679 3.321 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.157 4.157 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.254 0.746 31 H 0.173 0.827 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.255 0.745 37 H -0.214 1.214 38 H -0.225 1.225 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.116 0.884 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.412 1.212 -3.125 3.637 hybrid contribution -0.574 -0.182 0.242 0.649 sum -1.986 1.031 -2.883 3.649 Atomic orbital electron populations 1.23534 0.75001 1.05631 1.02473 1.86524 1.24807 1.33197 1.83460 1.23974 0.92475 0.81011 0.70944 1.90664 1.67873 1.37346 1.46756 1.22435 0.85978 1.01669 1.02386 0.83049 1.23418 0.97640 1.01221 0.94510 1.22429 0.97661 0.89827 0.88252 0.86551 1.45766 1.15947 1.36862 1.36859 1.18640 0.81776 0.83552 0.82289 1.90815 1.47825 1.41226 1.66784 1.23011 0.99744 1.01803 0.98707 1.22373 0.96547 0.94047 0.90674 1.19130 0.95016 0.96906 0.97182 1.21561 0.99942 0.93848 0.96170 1.20982 0.96981 1.00260 0.98069 1.19941 0.94242 0.96680 0.97256 1.24872 0.99994 0.97076 0.97277 1.86438 1.48515 1.52994 1.49439 0.94322 0.73893 0.81049 0.82834 1.21169 0.99520 0.94113 0.97203 1.21737 0.96262 0.98501 0.94898 1.23338 0.96522 0.94669 1.01197 0.92032 0.91950 0.85388 0.88880 0.89216 0.74626 0.82705 0.85031 0.83099 0.86155 0.88553 0.74453 1.21398 1.22521 0.84011 0.83377 0.88388 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -1.06 10.57 -51.42 -0.54 -1.60 16 3 C 0.47 1.66 7.48 71.24 0.53 2.20 16 4 O -0.54 -4.95 15.65 21.98 0.34 -4.61 16 5 C -0.11 0.26 4.26 -11.02 -0.05 0.21 16 6 H 0.15 -0.97 8.14 -2.38 -0.02 -0.99 16 7 C -0.13 0.30 7.43 31.12 0.23 0.54 16 8 C 0.12 -0.19 4.24 45.53 0.19 0.01 16 9 H 0.12 0.09 7.46 -2.39 -0.02 0.08 16 10 N -0.70 0.85 5.35 -444.21 -2.38 -1.53 16 11 C 0.55 2.42 7.74 86.37 0.67 3.09 16 12 O -0.58 -7.36 15.83 -4.37 -0.07 -7.43 16 13 C -0.21 -0.12 9.41 23.62 0.22 0.10 16 14 C -0.02 -0.04 9.46 23.84 0.23 0.18 16 15 C -0.08 -0.24 5.87 -20.15 -0.12 -0.35 16 16 C -0.10 -0.21 9.41 22.57 0.21 0.00 16 17 C -0.15 -0.61 8.65 22.23 0.19 -0.41 16 18 C -0.08 -0.32 5.43 -19.79 -0.11 -0.43 16 19 C -0.08 0.10 2.81 71.24 0.20 0.30 16 20 O -0.56 0.50 12.74 -148.98 -1.90 -1.40 16 21 Si 0.77 -2.07 29.77 68.60 2.04 -0.03 16 22 C -0.10 -0.32 9.59 22.23 0.21 -0.10 16 23 C -0.10 -0.23 9.80 22.57 0.22 -0.01 16 24 C -0.12 0.37 7.16 31.13 0.22 0.60 16 25 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 26 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 27 H 0.13 -0.83 8.14 -2.38 -0.02 -0.85 16 28 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.09 -0.16 8.09 -2.38 -0.02 -0.18 16 30 H 0.42 -2.62 8.71 -92.71 -0.81 -3.43 16 31 H 0.16 -0.83 6.07 -2.91 -0.02 -0.85 16 32 H 0.13 0.51 7.52 -2.91 -0.02 0.48 16 33 H 0.15 -0.47 6.17 -2.91 -0.02 -0.49 16 34 H 0.12 0.38 4.86 -2.91 -0.01 0.37 16 35 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 36 H 0.40 -4.60 8.74 -74.06 -0.65 -5.25 16 37 H -0.29 -0.69 7.11 99.48 0.71 0.02 16 38 H -0.30 -1.49 7.11 99.48 0.71 -0.78 16 39 H 0.14 0.06 8.06 -2.91 -0.02 0.03 16 40 H 0.15 -0.22 8.06 -2.91 -0.02 -0.24 16 41 H 0.10 -0.16 7.41 -2.39 -0.02 -0.18 16 42 H 0.10 -0.48 8.14 -2.38 -0.02 -0.50 16 Total: 0.00 -24.58 361.36 1.41 -23.17 By element: Atomic # 1 Polarization: -13.31 SS G_CDS: -0.35 Total: -13.66 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 4.26 Total: 7.08 kcal Atomic # 7 Polarization: 0.85 SS G_CDS: -2.38 Total: -1.53 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -2.17 Total: -15.04 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: 2.04 Total: -0.03 kcal Total: -24.58 1.41 -23.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_12360594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.999 kcal (2) G-P(sol) polarization free energy of solvation -24.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds