Wall clock time and date at job start Sat Mar 6 2021 15:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99632 * 2 1 4 4 O 1.20824 * 120.00311 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00134 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.84917 * 48.80069 * 5 3 2 7 7 C 1.53784 * 113.61718 * 180.02562 * 5 3 2 8 8 C 1.53782 * 87.08264 * 140.06733 * 7 5 3 9 9 H 1.08991 * 113.62067 * 89.19957 * 8 7 5 10 10 N 1.46496 * 113.61202 * 220.02154 * 8 7 5 11 11 C 1.34774 * 120.00087 * 204.99813 * 10 8 7 12 12 O 1.21591 * 119.99897 * 359.97438 * 11 10 8 13 13 C 1.47542 * 120.00065 * 179.97438 * 11 10 8 14 14 C 1.40136 * 120.18817 * 180.02562 * 13 11 10 15 15 O 1.35651 * 120.15544 * 359.97438 * 14 13 11 16 16 C 1.42898 * 117.00391 * 180.02562 * 15 14 13 17 17 C 1.38709 * 119.69849 * 179.97438 * 14 13 11 18 18 C 1.38060 * 120.08515 * 359.74944 * 17 14 13 19 19 C 1.38557 * 120.38490 * 0.50407 * 18 17 14 20 20 C 1.50702 * 119.84476 * 179.76659 * 19 18 17 21 21 O 1.42903 * 109.47007 * 119.73049 * 20 19 18 22 22 Si 1.86300 * 109.47301 * 359.72536 * 20 19 18 23 23 C 1.37781 * 120.30202 * 359.49254 * 19 18 17 24 24 C 1.53783 * 87.08069 * 334.56633 * 8 7 5 25 25 H 1.08998 * 109.47273 * 299.99244 * 1 2 3 26 26 H 1.08994 * 109.47301 * 60.00332 * 1 2 3 27 27 H 1.09005 * 109.46683 * 180.02562 * 1 2 3 28 28 H 1.08991 * 113.61563 * 25.51462 * 7 5 3 29 29 H 1.09002 * 113.60816 * 254.60888 * 7 5 3 30 30 H 0.97003 * 120.00445 * 24.99328 * 10 8 7 31 31 H 1.08997 * 109.47159 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47056 * 299.99733 * 16 15 14 33 33 H 1.08999 * 109.47401 * 59.99545 * 16 15 14 34 34 H 1.07999 * 119.96086 * 180.02562 * 17 14 13 35 35 H 1.07992 * 119.80853 * 180.25009 * 18 17 14 36 36 H 1.09004 * 109.46923 * 239.72618 * 20 19 18 37 37 H 0.96700 * 113.99509 * 299.99566 * 21 20 19 38 38 H 1.48498 * 109.99634 * 58.68378 * 22 20 19 39 39 H 1.48502 * 109.99691 * 180.02562 * 22 20 19 40 40 H 1.07999 * 120.04940 * 180.27158 * 23 19 18 41 41 H 1.09000 * 113.61722 * 139.98536 * 24 8 7 42 42 H 1.09007 * 113.61170 * 270.89030 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 4.0233 0.6366 -0.7567 7 6 4.1076 2.7144 0.0001 8 6 5.1827 2.2259 0.9852 9 1 6.0822 1.8492 0.4984 10 7 5.4736 3.1809 2.0573 11 6 6.6727 3.1590 2.6723 12 8 7.5128 2.3463 2.3376 13 6 6.9658 4.1212 3.7517 14 6 8.2115 4.1023 4.3935 15 8 9.1539 3.1986 4.0256 16 6 10.3994 3.2389 4.7250 17 6 8.4764 5.0118 5.4066 18 6 7.5182 5.9344 5.7765 19 6 6.2836 5.9529 5.1479 20 6 5.2447 6.9618 5.5649 21 8 4.9088 7.7887 4.4489 22 14 5.9233 8.0198 6.9400 23 6 6.0034 5.0567 4.1395 24 6 4.1936 1.1221 1.3951 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.4179 3.4401 0.4310 29 1 4.5090 3.0303 -0.9628 30 1 4.8033 3.8291 2.3246 31 1 11.0611 2.4663 4.3334 32 1 10.8617 4.2164 4.5877 33 1 10.2257 3.0650 5.7869 34 1 9.4351 5.0013 5.9038 35 1 7.7307 6.6431 6.5631 36 1 4.3523 6.4416 5.9132 37 1 5.6569 8.2827 4.0863 38 1 7.1581 8.7097 6.4878 39 1 4.9079 9.0185 7.3607 40 1 5.0413 5.0776 3.6494 41 1 4.6643 0.1526 1.5585 42 1 3.5273 1.4126 2.2075 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_12496546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:34:36 Heat of formation + Delta-G solvation = -124.905620 kcal Electronic energy + Delta-G solvation = -27068.998676 eV Core-core repulsion = 22982.654834 eV Total energy + Delta-G solvation = -4086.343842 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.08033 -41.64877 -40.41355 -39.22861 -38.98150 -37.44242 -37.23089 -34.70466 -32.53984 -31.81747 -29.39986 -28.52712 -27.03524 -26.84354 -26.16348 -25.08889 -23.03859 -22.09950 -21.57866 -20.71189 -19.44793 -18.94955 -18.40798 -18.21174 -17.92350 -17.46052 -17.08721 -16.86670 -16.54022 -16.21257 -16.12752 -15.91855 -15.79534 -15.71459 -14.83884 -14.61352 -14.52113 -14.44542 -14.20700 -13.70442 -13.58349 -13.55439 -13.34702 -13.11606 -13.00640 -12.52433 -12.44575 -12.31657 -12.22477 -12.03827 -11.86393 -11.81521 -11.68094 -11.44169 -11.02330 -10.56230 -10.28264 -10.04034 -9.29070 -4.90061 -0.26847 0.21564 1.04418 1.32992 1.61732 1.64144 1.75429 1.99521 2.16331 2.27728 2.66574 3.22696 3.30895 3.40667 3.56662 3.63336 3.66139 3.74312 3.74742 3.96439 4.03406 4.15973 4.25126 4.27669 4.32056 4.37952 4.39986 4.49287 4.55925 4.61674 4.62958 4.67467 4.69554 4.75195 4.81659 4.90362 4.92901 5.06348 5.12469 5.27570 5.31552 5.47505 5.56469 6.30145 6.48378 6.51284 6.63438 7.18030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.104 4.104 6 H 0.152 0.848 7 C -0.120 4.120 8 C 0.126 3.874 9 H 0.116 0.884 10 N -0.709 5.709 11 C 0.560 3.440 12 O -0.559 6.559 13 C -0.197 4.197 14 C 0.173 3.827 15 O -0.312 6.312 16 C 0.011 3.989 17 C -0.212 4.212 18 C -0.042 4.042 19 C -0.165 4.165 20 C -0.075 4.075 21 O -0.548 6.548 22 Si 0.763 3.237 23 C -0.018 4.018 24 C -0.128 4.128 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.128 0.872 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.410 0.590 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.129 0.871 37 H 0.386 0.614 38 H -0.279 1.279 39 H -0.307 1.307 40 H 0.147 0.853 41 H 0.093 0.907 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.339 -0.174 4.019 4.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.123 4.123 6 H 0.170 0.830 7 C -0.158 4.158 8 C 0.021 3.979 9 H 0.134 0.866 10 N -0.361 5.361 11 C 0.349 3.651 12 O -0.438 6.438 13 C -0.201 4.201 14 C 0.124 3.876 15 O -0.223 6.223 16 C -0.083 4.083 17 C -0.230 4.230 18 C -0.059 4.059 19 C -0.166 4.166 20 C -0.184 4.184 21 O -0.356 6.356 22 Si 0.669 3.331 23 C -0.036 4.036 24 C -0.167 4.167 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.248 0.752 31 H 0.126 0.874 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.146 0.854 37 H 0.236 0.764 38 H -0.206 1.206 39 H -0.235 1.235 40 H 0.165 0.835 41 H 0.112 0.888 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.339 -0.093 3.984 4.204 hybrid contribution -0.381 0.841 -0.995 1.357 sum 0.958 0.748 2.989 3.227 Atomic orbital electron populations 1.23528 0.75028 1.05595 1.02467 1.86524 1.24775 1.33145 1.83464 1.23953 0.92436 0.81027 0.70958 1.90666 1.67854 1.37355 1.46734 1.22418 0.86011 1.01518 1.02384 0.83000 1.23335 0.96498 0.94746 1.01195 1.22414 0.97622 0.89779 0.88114 0.86584 1.45795 1.15749 1.37268 1.37301 1.18295 0.81922 0.83200 0.81725 1.90808 1.47465 1.40007 1.65558 1.19405 0.94987 1.02958 1.02770 1.19399 0.88145 0.88155 0.91871 1.86332 1.24597 1.52007 1.59406 1.23452 0.82624 1.04313 0.97930 1.21479 1.03146 0.98214 1.00179 1.21280 0.91402 0.96267 0.96998 1.20171 0.96509 1.00183 0.99735 1.25141 1.01939 0.95087 0.96237 1.86582 1.39809 1.61485 1.47700 0.94196 0.76218 0.80642 0.82093 1.21089 0.97676 0.90600 0.94277 1.23418 0.97578 1.01196 0.94534 0.92026 0.91977 0.85415 0.88508 0.88267 0.75183 0.87397 0.91016 0.90660 0.81926 0.82545 0.85358 0.76429 1.20559 1.23505 0.83525 0.88829 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -1.20 10.57 -51.39 -0.54 -1.75 16 3 C 0.47 1.96 7.49 71.23 0.53 2.49 16 4 O -0.54 -5.31 15.65 21.97 0.34 -4.97 16 5 C -0.10 0.17 4.26 -11.01 -0.05 0.12 16 6 H 0.15 -0.87 8.14 -2.39 -0.02 -0.89 16 7 C -0.12 0.22 7.16 31.12 0.22 0.44 16 8 C 0.13 0.02 4.24 45.52 0.19 0.21 16 9 H 0.12 0.28 7.46 -2.39 -0.02 0.27 16 10 N -0.71 -1.07 5.30 -443.21 -2.35 -3.42 16 11 C 0.56 4.49 7.76 86.70 0.67 5.16 16 12 O -0.56 -8.86 14.76 16.92 0.25 -8.61 16 13 C -0.20 -0.94 5.89 -20.01 -0.12 -1.06 16 14 C 0.17 0.81 6.70 22.84 0.15 0.97 16 15 O -0.31 -2.38 8.57 -68.74 -0.59 -2.97 16 16 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 17 C -0.21 0.40 9.03 22.34 0.20 0.60 16 18 C -0.04 0.17 8.66 22.30 0.19 0.37 16 19 C -0.17 0.45 5.39 -19.90 -0.11 0.34 16 20 C -0.08 0.29 2.81 71.24 0.20 0.49 16 21 O -0.55 0.30 12.76 -148.98 -1.90 -1.60 16 22 Si 0.76 -3.63 29.77 68.60 2.04 -1.59 16 23 C -0.02 0.01 9.09 22.52 0.20 0.21 16 24 C -0.13 0.16 7.43 31.12 0.23 0.39 16 25 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 26 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 27 H 0.13 -0.78 8.14 -2.38 -0.02 -0.80 16 28 H 0.10 -0.02 7.41 -2.39 -0.02 -0.03 16 29 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.41 -1.17 6.76 -92.71 -0.63 -1.80 16 31 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.07 -0.38 7.66 -2.39 -0.02 -0.40 16 33 H 0.07 -0.43 7.66 -2.39 -0.02 -0.45 16 34 H 0.16 -1.15 6.30 -2.91 -0.02 -1.17 16 35 H 0.16 -1.44 4.85 -2.91 -0.01 -1.46 16 36 H 0.13 -0.72 7.96 -2.38 -0.02 -0.74 16 37 H 0.39 -2.20 8.70 -74.06 -0.64 -2.85 16 38 H -0.28 0.39 7.10 99.48 0.71 1.10 16 39 H -0.31 -1.21 7.11 99.48 0.71 -0.50 16 40 H 0.15 -0.56 6.40 -2.91 -0.02 -0.58 16 41 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.09 -0.06 8.10 -2.38 -0.02 -0.08 16 Total: 0.00 -25.22 354.10 1.94 -23.28 By element: Atomic # 1 Polarization: -11.22 SS G_CDS: -0.15 Total: -11.37 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 4.84 Total: 13.00 kcal Atomic # 7 Polarization: -1.07 SS G_CDS: -2.35 Total: -3.42 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -2.44 Total: -19.90 kcal Atomic # 14 Polarization: -3.63 SS G_CDS: 2.04 Total: -1.59 kcal Total: -25.22 1.94 -23.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_12496546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.622 kcal (2) G-P(sol) polarization free energy of solvation -25.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds