Wall clock time and date at job start Sat Mar 6 2021 15:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99259 * 2 1 4 4 O 1.20829 * 120.00628 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99870 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.90790 * 311.25401 * 5 3 2 7 7 C 1.53775 * 113.61351 * 82.50644 * 5 3 2 8 8 C 1.53779 * 87.08308 * 139.98235 * 7 5 3 9 9 H 1.09001 * 113.69151 * 89.12530 * 8 7 5 10 10 N 1.46495 * 113.61590 * 220.01604 * 8 7 5 11 11 C 1.34775 * 120.00480 * 252.49641 * 10 8 7 12 12 O 1.21285 * 119.99794 * 359.97438 * 11 10 8 13 13 C 1.50698 * 120.00249 * 180.02562 * 11 10 8 14 14 N 1.46500 * 109.46905 * 179.97438 * 13 11 10 15 15 C 1.35045 * 125.92911 * 125.00182 * 14 13 11 16 16 C 1.35082 * 107.97747 * 180.02562 * 15 14 13 17 17 C 1.50699 * 126.07214 * 180.02562 * 16 15 14 18 18 O 1.42894 * 109.47489 * 103.99564 * 17 16 15 19 19 Si 1.86308 * 109.47187 * 343.99552 * 17 16 15 20 20 C 1.40844 * 107.85025 * 0.26222 * 16 15 14 21 21 C 1.48415 * 126.03420 * 179.70046 * 20 16 15 22 22 C 1.39326 * 120.11854 * 223.02915 * 21 20 16 23 23 C 1.38017 * 119.88025 * 179.79157 * 22 21 20 24 24 C 1.38319 * 120.11983 * 0.46715 * 23 22 21 25 25 C 1.38322 * 120.24037 * 359.78549 * 24 23 22 26 26 C 1.38013 * 120.11767 * 359.97438 * 25 24 23 27 27 N 1.31622 * 107.92385 * 359.55403 * 20 16 15 28 28 C 1.53777 * 87.07987 * 334.56859 * 8 7 5 29 29 H 1.09007 * 109.46698 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47170 * 299.99099 * 1 2 3 31 31 H 1.09003 * 109.47385 * 60.00182 * 1 2 3 32 32 H 1.09000 * 113.61648 * 25.43187 * 7 5 3 33 33 H 1.09006 * 113.61601 * 254.52835 * 7 5 3 34 34 H 0.97001 * 119.99870 * 72.50031 * 10 8 7 35 35 H 1.09001 * 109.46803 * 60.00178 * 13 11 10 36 36 H 1.08998 * 109.47352 * 300.00051 * 13 11 10 37 37 H 1.07994 * 126.00669 * 359.97438 * 15 14 13 38 38 H 1.09003 * 109.46814 * 224.00056 * 17 16 15 39 39 H 0.96705 * 114.00227 * 179.97438 * 18 17 16 40 40 H 1.48501 * 109.99750 * 298.68344 * 19 17 16 41 41 H 1.48502 * 109.99582 * 60.00421 * 19 17 16 42 42 H 1.08003 * 120.05959 * 359.97438 * 22 21 20 43 43 H 1.08008 * 119.94403 * 180.23015 * 23 22 21 44 44 H 1.08004 * 119.88311 * 179.76251 * 24 23 22 45 45 H 1.08004 * 119.94056 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.05882 * 180.02562 * 26 25 24 47 47 H 1.08999 * 113.61543 * 139.97891 * 28 8 7 48 48 H 1.09000 * 113.61587 * 270.80045 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4031 2.2094 0.0005 5 6 3.5662 1.2751 -0.0006 6 1 4.0250 0.6360 0.7539 7 6 4.1904 1.1242 -1.3978 8 6 5.1805 2.2274 -0.9886 9 1 6.0811 1.8501 -0.5042 10 7 5.4690 3.1839 -2.0600 11 6 6.6667 3.1629 -2.6777 12 8 7.5059 2.3524 -2.3461 13 6 6.9638 4.1472 -3.7794 14 7 8.3204 3.9208 -4.2839 15 6 8.6590 3.6884 -5.5704 16 6 9.9994 3.5310 -5.6268 17 6 10.8088 3.2539 -6.8674 18 8 11.4798 4.4478 -7.2751 19 14 9.6773 2.6807 -8.2320 20 6 10.5055 3.6666 -4.3195 21 6 11.9308 3.5604 -3.9196 22 6 12.2842 2.8530 -2.7725 23 6 13.6116 2.7537 -2.4076 24 6 14.5893 3.3631 -3.1730 25 6 14.2436 4.0711 -4.3099 26 6 12.9197 4.1725 -4.6867 27 7 9.4915 3.9072 -3.5155 28 6 4.1076 2.7144 -0.0004 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5136 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.5224 1.4156 -2.2083 33 1 4.6609 0.1549 -1.5636 34 1 4.7981 3.8324 -2.3249 35 1 6.8859 5.1624 -3.3903 36 1 6.2472 4.0127 -4.5897 37 1 7.9777 3.6365 -6.4067 38 1 11.5444 2.4779 -6.6555 39 1 12.0215 4.3430 -8.0693 40 1 8.9973 1.4222 -7.8330 41 1 8.6696 3.7300 -8.5305 42 1 11.5212 2.3807 -2.1716 43 1 13.8871 2.2025 -1.5206 44 1 15.6265 3.2862 -2.8818 45 1 15.0109 4.5453 -4.9038 46 1 12.6509 4.7251 -5.5748 47 1 4.5110 3.0291 0.9621 48 1 3.4177 3.4418 -0.4284 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_12622748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:34:42 Heat of formation + Delta-G solvation = -7.117034 kcal Electronic energy + Delta-G solvation = -32738.884546 eV Core-core repulsion = 28149.725111 eV Total energy + Delta-G solvation = -4589.159435 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.156 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.62139 -42.05088 -40.91945 -39.82347 -39.22134 -37.62108 -37.49212 -35.01165 -34.62424 -32.45377 -31.88921 -31.54849 -29.65714 -28.84243 -26.91924 -26.86143 -25.83786 -24.28972 -23.47193 -22.70494 -21.90262 -21.67902 -21.02243 -20.62742 -19.09556 -18.52962 -18.44842 -18.20755 -18.03930 -17.56027 -17.44637 -16.78853 -16.57261 -16.37713 -16.06621 -15.95547 -15.73795 -15.37715 -15.15975 -14.89759 -14.79396 -14.56829 -14.37280 -14.32234 -14.08737 -13.96606 -13.76956 -13.66969 -13.57775 -13.37823 -13.06111 -12.65423 -12.61640 -12.42444 -12.27644 -12.13073 -11.91507 -11.89595 -11.87878 -11.75819 -11.50967 -11.30929 -10.73330 -10.26456 -10.14005 -9.89230 -9.84408 -9.40429 -4.91589 0.06664 0.48070 0.65443 0.98782 1.13685 1.32588 1.37806 1.54482 1.60525 1.75140 2.00357 2.05253 2.86716 3.15002 3.21985 3.23477 3.45860 3.47466 3.55397 3.67154 3.75813 3.80029 3.94881 3.98550 4.03162 4.06222 4.14166 4.21074 4.24035 4.27770 4.34453 4.40274 4.49122 4.50047 4.54724 4.59734 4.64040 4.73056 4.73472 4.80904 4.83751 4.96611 4.97337 5.16823 5.25292 5.26498 5.35570 5.57371 5.61373 5.61777 5.72641 6.06168 6.31698 6.45242 6.58142 7.01042 7.03687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.473 3.527 4 O -0.535 6.535 5 C -0.107 4.107 6 H 0.148 0.852 7 C -0.127 4.127 8 C 0.126 3.874 9 H 0.108 0.892 10 N -0.702 5.702 11 C 0.500 3.500 12 O -0.560 6.560 13 C 0.106 3.894 14 N -0.360 5.360 15 C 0.055 3.945 16 C -0.226 4.226 17 C -0.041 4.041 18 O -0.559 6.559 19 Si 0.785 3.215 20 C 0.113 3.887 21 C -0.040 4.040 22 C -0.112 4.112 23 C -0.130 4.130 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.098 4.098 27 N -0.288 5.288 28 C -0.117 4.117 29 H 0.127 0.873 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.421 0.579 35 H 0.144 0.856 36 H 0.171 0.829 37 H 0.198 0.802 38 H 0.071 0.929 39 H 0.401 0.599 40 H -0.300 1.300 41 H -0.276 1.276 42 H 0.105 0.895 43 H 0.139 0.861 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.151 0.849 47 H 0.096 0.904 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 -0.495 -5.358 5.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.317 3.683 4 O -0.424 6.424 5 C -0.126 4.126 6 H 0.166 0.834 7 C -0.166 4.166 8 C 0.021 3.979 9 H 0.126 0.874 10 N -0.355 5.355 11 C 0.286 3.714 12 O -0.437 6.437 13 C -0.017 4.017 14 N -0.142 5.142 15 C -0.090 4.090 16 C -0.237 4.237 17 C -0.151 4.151 18 O -0.369 6.369 19 Si 0.689 3.311 20 C -0.052 4.052 21 C -0.042 4.042 22 C -0.131 4.131 23 C -0.148 4.148 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.117 4.117 27 N -0.110 5.110 28 C -0.155 4.155 29 H 0.146 0.854 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.259 0.741 35 H 0.161 0.839 36 H 0.188 0.812 37 H 0.215 0.785 38 H 0.089 0.911 39 H 0.252 0.748 40 H -0.228 1.228 41 H -0.202 1.202 42 H 0.123 0.877 43 H 0.157 0.843 44 H 0.167 0.833 45 H 0.170 0.830 46 H 0.168 0.832 47 H 0.115 0.885 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.845 -0.467 -3.580 4.596 hybrid contribution -0.716 0.013 0.223 0.750 sum -3.560 -0.454 -3.357 4.914 Atomic orbital electron populations 1.23539 0.74918 1.05635 1.02539 1.86525 1.24876 1.33209 1.83451 1.23907 0.92355 0.81038 0.71009 1.90667 1.67808 1.37270 1.46684 1.22412 0.86156 1.01691 1.02337 0.83448 1.23408 0.97576 1.00945 0.94674 1.22359 0.97408 0.89892 0.88261 0.87386 1.45730 1.15604 1.37225 1.36957 1.20962 0.82155 0.84706 0.83613 1.90810 1.47393 1.40183 1.65271 1.22004 0.79300 1.01154 0.99260 1.48116 1.06261 1.54918 1.04899 1.22601 0.96771 1.01056 0.88543 1.19888 0.93030 1.16035 0.94761 1.24140 1.01260 0.90780 0.98896 1.86408 1.66974 1.33011 1.50464 0.94076 0.79076 0.75566 0.82341 1.20989 0.93131 0.99449 0.91654 1.17998 0.88462 1.01009 0.96719 1.21241 0.97140 0.99032 0.95726 1.21319 0.92036 1.00561 1.00899 1.21627 1.00491 0.96221 0.94742 1.21466 0.96020 0.99191 0.97397 1.21752 0.92255 0.97908 0.99789 1.77690 0.90743 1.23957 1.18586 1.23322 0.96411 0.94684 1.01074 0.85449 0.91945 0.91886 0.88650 0.89349 0.74101 0.83853 0.81156 0.78545 0.91130 0.74827 1.22757 1.20189 0.87710 0.84307 0.83323 0.83005 0.83153 0.88545 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.88 10.57 -51.38 -0.54 -1.42 16 3 C 0.47 1.32 7.48 71.24 0.53 1.85 16 4 O -0.53 -4.38 15.65 21.95 0.34 -4.03 16 5 C -0.11 0.31 4.26 -11.01 -0.05 0.26 16 6 H 0.15 -0.89 8.14 -2.39 -0.02 -0.91 16 7 C -0.13 0.41 7.43 31.12 0.23 0.64 16 8 C 0.13 -0.29 4.24 45.52 0.19 -0.09 16 9 H 0.11 0.20 7.46 -2.39 -0.02 0.18 16 10 N -0.70 2.70 5.35 -440.06 -2.36 0.35 16 11 C 0.50 1.49 7.86 87.66 0.69 2.18 16 12 O -0.56 -8.10 15.30 -3.05 -0.05 -8.14 16 13 C 0.11 -0.25 6.99 85.63 0.60 0.35 16 14 N -0.36 -2.83 3.40 -351.92 -1.20 -4.03 16 15 C 0.06 0.34 9.96 83.47 0.83 1.18 16 16 C -0.23 -2.07 5.38 -19.95 -0.11 -2.18 16 17 C -0.04 -0.08 2.16 71.24 0.15 0.08 16 18 O -0.56 0.21 10.41 -148.98 -1.55 -1.34 16 19 Si 0.79 -2.08 30.81 68.60 2.11 0.03 16 20 C 0.11 1.60 6.66 42.53 0.28 1.88 16 21 C -0.04 -0.49 5.74 -20.04 -0.11 -0.61 16 22 C -0.11 -1.34 9.78 22.48 0.22 -1.12 16 23 C -0.13 -0.86 10.03 22.24 0.22 -0.64 16 24 C -0.11 -0.38 10.04 22.31 0.22 -0.15 16 25 C -0.12 -0.42 10.03 22.24 0.22 -0.20 16 26 C -0.10 -0.74 9.05 22.48 0.20 -0.53 16 27 N -0.29 -4.50 11.67 -48.16 -0.56 -5.07 16 28 C -0.12 0.46 7.15 31.12 0.22 0.69 16 29 H 0.13 -0.87 8.14 -2.38 -0.02 -0.89 16 30 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 31 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 32 H 0.10 -0.36 8.09 -2.39 -0.02 -0.38 16 33 H 0.09 -0.22 8.14 -2.38 -0.02 -0.24 16 34 H 0.42 -4.45 8.73 -92.71 -0.81 -5.26 16 35 H 0.14 -1.02 8.14 -2.39 -0.02 -1.04 16 36 H 0.17 -2.01 8.07 -2.39 -0.02 -2.03 16 37 H 0.20 -0.11 6.37 -2.91 -0.02 -0.13 16 38 H 0.07 0.10 7.96 -2.39 -0.02 0.08 16 39 H 0.40 -4.46 8.74 -74.05 -0.65 -5.11 16 40 H -0.30 -1.32 7.11 99.48 0.71 -0.61 16 41 H -0.28 -0.24 7.02 99.48 0.70 0.46 16 42 H 0.10 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.14 0.36 8.06 -2.91 -0.02 0.33 16 44 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 45 H 0.15 -0.36 8.06 -2.91 -0.02 -0.38 16 46 H 0.15 0.93 5.34 -2.91 -0.02 0.91 16 47 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 48 H 0.10 -0.35 7.41 -2.39 -0.02 -0.37 16 Total: 0.00 -35.42 409.47 1.55 -33.86 By element: Atomic # 1 Polarization: -14.53 SS G_CDS: -0.41 Total: -14.94 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.76 Total: 4.73 kcal Atomic # 7 Polarization: -4.63 SS G_CDS: -4.12 Total: -8.75 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.80 Total: -14.94 kcal Atomic # 14 Polarization: -2.08 SS G_CDS: 2.11 Total: 0.03 kcal Total: -35.42 1.55 -33.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_12622748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.748 kcal (2) G-P(sol) polarization free energy of solvation -35.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds