Wall clock time and date at job start Sat Mar 6 2021 15:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 117.00059 * 2 1 4 4 O 1.20826 * 119.99983 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00099 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.90993 * 311.26183 * 5 3 2 7 7 C 1.53792 * 113.61057 * 82.50804 * 5 3 2 8 8 C 1.53787 * 87.07905 * 139.98084 * 7 5 3 9 9 H 1.08997 * 113.68981 * 89.12812 * 8 7 5 10 10 N 1.46503 * 113.61020 * 220.01758 * 8 7 5 11 11 C 1.34773 * 119.99748 * 252.49597 * 10 8 7 12 12 O 1.21628 * 120.00357 * 0.02562 * 11 10 8 13 13 C 1.47297 * 119.99725 * 180.02562 * 11 10 8 14 14 C 1.40371 * 120.04363 * 179.97438 * 13 11 10 15 15 O 1.35670 * 120.13955 * 0.02562 * 14 13 11 16 16 C 1.38317 * 119.71971 * 179.74364 * 14 13 11 17 17 C 1.39568 * 119.81799 * 0.50204 * 16 14 13 18 18 C 1.47564 * 119.95505 * 179.78915 * 17 16 14 19 19 C 1.36105 * 125.93948 * 179.72690 * 18 17 16 20 20 C 1.40800 * 106.73149 * 180.02562 * 19 18 17 21 21 C 1.34828 * 107.04950 * 0.02562 * 20 19 18 22 22 C 1.50705 * 125.65410 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.46956 * 64.99909 * 22 21 20 24 24 Si 1.86295 * 109.47371 * 184.99674 * 22 21 20 25 25 O 1.34228 * 108.69468 * 359.97438 * 21 20 19 26 26 C 1.39959 * 120.08353 * 359.51783 * 17 16 14 27 27 C 1.36387 * 120.28358 * 0.22584 * 26 17 16 28 28 C 1.53780 * 87.08359 * 334.56851 * 8 7 5 29 29 H 1.09003 * 109.47327 * 59.98958 * 1 2 3 30 30 H 1.08995 * 109.47578 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46958 * 299.99792 * 1 2 3 32 32 H 1.08998 * 113.61186 * 25.43092 * 7 5 3 33 33 H 1.08998 * 113.61190 * 254.53077 * 7 5 3 34 34 H 0.97001 * 119.99606 * 72.50318 * 10 8 7 35 35 H 0.96698 * 113.99886 * 90.00002 * 15 14 13 36 36 H 1.08007 * 120.09130 * 180.29637 * 16 14 13 37 37 H 1.08000 * 126.63644 * 359.77385 * 19 18 17 38 38 H 1.08000 * 126.47146 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47098 * 305.00196 * 22 21 20 40 40 H 0.96694 * 113.99914 * 60.00139 * 23 22 21 41 41 H 1.48498 * 110.00184 * 179.97438 * 24 22 21 42 42 H 1.48503 * 110.00158 * 301.32326 * 24 22 21 43 43 H 1.08005 * 119.86045 * 180.25392 * 26 17 16 44 44 H 1.07996 * 119.91221 * 180.02562 * 27 26 17 45 45 H 1.08993 * 113.61399 * 139.98033 * 28 8 7 46 46 H 1.09006 * 113.61390 * 270.80559 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0244 0.6360 0.7556 7 6 4.1916 1.1233 -1.3963 8 6 5.1814 2.2267 -0.9866 9 1 6.0816 1.8495 -0.5015 10 7 5.4708 3.1828 -2.0583 11 6 6.6689 3.1614 -2.6750 12 8 7.5098 2.3481 -2.3422 13 6 6.9601 4.1231 -3.7521 14 6 8.2079 4.1020 -4.3947 15 8 9.1486 3.1964 -4.0264 16 6 8.4723 5.0046 -5.4088 17 6 7.5014 5.9364 -5.7791 18 6 7.7819 6.9038 -6.8576 19 6 6.9263 7.8568 -7.3182 20 6 7.6024 8.5476 -8.3421 21 6 8.8240 7.9887 -8.4562 22 6 9.8945 8.4083 -9.4305 23 8 10.3260 9.7351 -9.1217 24 14 11.3404 7.2402 -9.3056 25 8 8.9289 6.9967 -7.5581 26 6 6.2600 5.9507 -5.1328 27 6 5.9934 5.0590 -4.1358 28 6 4.1078 2.7142 0.0006 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.5241 1.4146 -2.2073 33 1 4.6620 0.1540 -1.5612 34 1 4.8000 3.8313 -2.3238 35 1 9.1050 2.3632 -4.5151 36 1 9.4286 4.9906 -5.9106 37 1 5.9217 8.0441 -6.9691 38 1 7.2151 9.3692 -8.9263 39 1 9.4935 8.3832 -10.4438 40 1 10.6951 9.8319 -8.2332 41 1 12.4027 7.6428 -10.2620 42 1 11.8761 7.2413 -7.9206 43 1 5.5098 6.6706 -5.4250 44 1 5.0334 5.0750 -3.6414 45 1 4.5105 3.0292 0.9632 46 1 3.4183 3.4415 -0.4282 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_12807986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:34:50 Heat of formation + Delta-G solvation = -112.239956 kcal Electronic energy + Delta-G solvation = -32486.011525 eV Core-core repulsion = 27696.856294 eV Total energy + Delta-G solvation = -4789.155231 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.134 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.74951 -42.04613 -41.45546 -40.13401 -38.87453 -38.20103 -37.86555 -37.41161 -34.83638 -34.19339 -33.20676 -31.31649 -30.53605 -29.34297 -27.44011 -26.81866 -26.50476 -24.51099 -24.06549 -22.83438 -22.27809 -21.86587 -21.34948 -20.78161 -19.70142 -18.96635 -18.71710 -18.58104 -18.00566 -17.67615 -17.52056 -17.44039 -16.98137 -16.64869 -16.49180 -16.14328 -15.91030 -15.86179 -15.82406 -15.36771 -14.82547 -14.46616 -14.44498 -14.36454 -14.16042 -13.98576 -13.80292 -13.68018 -13.60028 -13.56003 -13.40885 -12.99775 -12.96507 -12.72907 -12.49546 -12.33309 -12.19614 -11.87804 -11.84381 -11.79872 -11.41986 -11.13960 -10.91023 -10.85076 -10.63164 -10.12894 -9.95380 -9.02215 -4.99674 -0.79839 0.14612 0.63566 1.06597 1.12344 1.42471 1.44643 1.65561 1.69449 1.87941 1.91125 2.13969 2.63667 3.01793 3.20782 3.24673 3.33013 3.36318 3.60402 3.64000 3.69321 3.76989 3.86630 3.98527 4.00116 4.03769 4.22141 4.26715 4.29353 4.36852 4.42838 4.50145 4.58310 4.64007 4.65125 4.69553 4.70552 4.79341 4.83865 4.89155 4.93473 5.05027 5.07114 5.11939 5.21536 5.33782 5.42551 5.46793 5.53808 5.95351 6.30482 6.45012 6.65352 6.71823 7.14346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.106 4.106 6 H 0.150 0.850 7 C -0.127 4.127 8 C 0.125 3.875 9 H 0.115 0.885 10 N -0.704 5.704 11 C 0.559 3.441 12 O -0.559 6.559 13 C -0.180 4.180 14 C 0.163 3.837 15 O -0.495 6.495 16 C -0.153 4.153 17 C 0.025 3.975 18 C 0.005 3.995 19 C -0.173 4.173 20 C -0.181 4.181 21 C -0.051 4.051 22 C -0.033 4.033 23 O -0.535 6.535 24 Si 0.764 3.236 25 O -0.176 6.176 26 C -0.111 4.111 27 C -0.052 4.052 28 C -0.120 4.120 29 H 0.062 0.938 30 H 0.127 0.873 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.414 0.586 35 H 0.410 0.590 36 H 0.139 0.861 37 H 0.181 0.819 38 H 0.167 0.833 39 H 0.158 0.842 40 H 0.389 0.611 41 H -0.280 1.280 42 H -0.297 1.297 43 H 0.168 0.832 44 H 0.169 0.831 45 H 0.097 0.903 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 -1.233 -2.208 6.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.125 4.125 6 H 0.168 0.832 7 C -0.166 4.166 8 C 0.020 3.980 9 H 0.133 0.867 10 N -0.357 5.357 11 C 0.348 3.652 12 O -0.438 6.438 13 C -0.184 4.184 14 C 0.116 3.884 15 O -0.308 6.308 16 C -0.171 4.171 17 C 0.025 3.975 18 C -0.044 4.044 19 C -0.192 4.192 20 C -0.201 4.201 21 C -0.101 4.101 22 C -0.143 4.143 23 O -0.343 6.343 24 Si 0.669 3.331 25 O -0.074 6.074 26 C -0.129 4.129 27 C -0.071 4.071 28 C -0.158 4.158 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.252 0.748 35 H 0.270 0.730 36 H 0.156 0.844 37 H 0.198 0.802 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.239 0.761 41 H -0.207 1.207 42 H -0.224 1.224 43 H 0.185 0.815 44 H 0.187 0.813 45 H 0.116 0.884 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.280 -1.277 -1.959 4.878 hybrid contribution -0.474 0.958 0.411 1.145 sum -4.754 -0.319 -1.549 5.010 Atomic orbital electron populations 1.23525 0.75030 1.05573 1.02494 1.86525 1.24776 1.33262 1.83475 1.23960 0.92449 0.81004 0.70969 1.90664 1.67846 1.37295 1.46716 1.22428 0.85988 1.01648 1.02481 0.83226 1.23421 0.97555 1.01154 0.94494 1.22421 0.97656 0.89781 0.88108 0.86677 1.45769 1.15682 1.37135 1.37082 1.18214 0.82001 0.83215 0.81798 1.90823 1.47278 1.40104 1.65561 1.20534 0.95589 1.01182 1.01048 1.18468 0.86715 0.91491 0.91691 1.84728 1.51985 1.28838 1.65241 1.21582 1.00749 0.96995 0.97815 1.17945 0.94766 0.92364 0.92444 1.20575 0.85611 1.00752 0.97453 1.22245 1.02044 0.96280 0.98593 1.21838 0.93683 1.03209 1.01326 1.23161 0.99420 0.92000 0.95530 1.24480 1.01270 0.90103 0.98445 1.86637 1.81917 1.26720 1.39021 0.93649 0.75554 0.85763 0.78155 1.83933 1.36586 1.46403 1.40451 1.21039 0.95521 1.00390 0.95904 1.21154 0.98822 0.91805 0.95275 1.23344 0.96520 0.94721 1.01183 0.91919 0.85507 0.92012 0.88929 0.88879 0.74772 0.73009 0.84358 0.80153 0.81565 0.82481 0.76067 1.20677 1.22431 0.81482 0.81324 0.88427 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.60 10.57 -51.42 -0.54 -1.14 16 3 C 0.47 0.95 7.48 71.23 0.53 1.48 16 4 O -0.54 -4.03 15.65 21.96 0.34 -3.68 16 5 C -0.11 0.42 4.26 -11.01 -0.05 0.37 16 6 H 0.15 -1.12 8.14 -2.39 -0.02 -1.14 16 7 C -0.13 0.54 7.43 31.13 0.23 0.77 16 8 C 0.13 -0.39 4.24 45.52 0.19 -0.19 16 9 H 0.12 -0.03 7.46 -2.39 -0.02 -0.05 16 10 N -0.70 1.99 5.30 -443.41 -2.35 -0.36 16 11 C 0.56 2.19 7.75 86.63 0.67 2.86 16 12 O -0.56 -6.58 14.74 16.88 0.25 -6.33 16 13 C -0.18 -0.27 5.89 -19.97 -0.12 -0.39 16 14 C 0.16 0.71 6.71 22.81 0.15 0.87 16 15 O -0.49 -3.27 11.56 -68.87 -0.80 -4.07 16 16 C -0.15 -0.42 9.65 22.61 0.22 -0.21 16 17 C 0.03 0.01 5.87 -20.08 -0.12 -0.11 16 18 C 0.01 0.01 7.02 24.24 0.17 0.18 16 19 C -0.17 0.28 10.26 22.40 0.23 0.51 16 20 C -0.18 0.08 10.78 22.11 0.24 0.32 16 21 C -0.05 -0.04 6.21 24.90 0.15 0.12 16 22 C -0.03 0.06 2.98 71.24 0.21 0.27 16 23 O -0.53 -0.42 12.88 -148.98 -1.92 -2.34 16 24 Si 0.76 -0.65 32.11 68.60 2.20 1.56 16 25 O -0.18 -0.54 8.79 -5.92 -0.05 -0.59 16 26 C -0.11 0.55 9.48 22.26 0.21 0.76 16 27 C -0.05 0.27 9.47 22.24 0.21 0.48 16 28 C -0.12 0.56 7.15 31.12 0.22 0.79 16 29 H 0.06 -0.12 8.13 -2.39 -0.02 -0.14 16 30 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 32 H 0.09 -0.39 8.09 -2.39 -0.02 -0.41 16 33 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H 0.41 -3.50 6.73 -92.71 -0.62 -4.12 16 35 H 0.41 -0.34 9.06 -74.06 -0.67 -1.01 16 36 H 0.14 0.37 7.90 -2.91 -0.02 0.35 16 37 H 0.18 -1.37 7.24 -2.91 -0.02 -1.39 16 38 H 0.17 -0.53 8.06 -2.91 -0.02 -0.55 16 39 H 0.16 -0.91 7.96 -2.39 -0.02 -0.93 16 40 H 0.39 -1.51 8.70 -74.06 -0.64 -2.15 16 41 H -0.28 -1.26 7.11 99.48 0.71 -0.55 16 42 H -0.30 -1.82 7.11 99.48 0.71 -1.11 16 43 H 0.17 -1.82 6.95 -2.91 -0.02 -1.84 16 44 H 0.17 -2.11 6.38 -2.91 -0.02 -2.12 16 45 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H 0.10 -0.39 7.42 -2.38 -0.02 -0.41 16 Total: 0.00 -27.52 399.79 0.88 -26.64 By element: Atomic # 1 Polarization: -18.87 SS G_CDS: -0.82 Total: -19.69 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 4.56 Total: 10.00 kcal Atomic # 7 Polarization: 1.99 SS G_CDS: -2.35 Total: -0.36 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -2.72 Total: -18.15 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: 2.20 Total: 1.56 kcal Total: -27.52 0.88 -26.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_12807986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.596 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds