Wall clock time and date at job start Sat Mar 6 2021 15:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34222 * 116.99724 * 2 1 4 4 O 1.20832 * 120.00340 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00165 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.84885 * 311.20069 * 5 3 2 7 7 C 1.53958 * 113.66445 * 82.43621 * 5 3 2 8 8 C 1.53777 * 87.01755 * 139.93731 * 7 5 3 9 9 H 1.09002 * 113.61841 * 89.22906 * 8 7 5 10 10 N 1.46503 * 113.61263 * 220.04628 * 8 7 5 11 11 C 1.34772 * 120.00224 * 254.13329 * 10 8 7 12 12 O 1.21571 * 120.00207 * 0.02562 * 11 10 8 13 13 C 1.47673 * 120.00184 * 179.97438 * 11 10 8 14 14 C 1.40006 * 120.44910 * 354.03824 * 13 11 10 15 15 N 1.31308 * 121.37022 * 179.97438 * 14 13 11 16 16 C 1.32824 * 121.89218 * 359.97438 * 15 14 13 17 17 N 1.37160 * 132.96118 * 180.02562 * 16 15 14 18 18 C 1.36945 * 110.11073 * 179.97438 * 17 16 15 19 19 C 1.34180 * 109.95516 * 0.02562 * 18 17 16 20 20 C 1.50694 * 126.60045 * 179.73653 * 19 18 17 21 21 O 1.42905 * 109.47081 * 255.02203 * 20 19 18 22 22 Si 1.86304 * 109.47015 * 15.01947 * 20 19 18 23 23 C 1.41012 * 120.08428 * 0.02562 * 16 15 14 24 24 C 1.39289 * 119.61881 * 359.97438 * 23 16 15 25 25 C 1.50696 * 121.02916 * 180.02562 * 24 23 16 26 26 C 1.53778 * 87.17471 * 334.63724 * 8 7 5 27 27 H 1.08997 * 109.47644 * 60.00278 * 1 2 3 28 28 H 1.09009 * 109.47105 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47236 * 300.00094 * 1 2 3 30 30 H 1.08995 * 113.61697 * 25.41499 * 7 5 3 31 31 H 1.09001 * 113.66644 * 254.46422 * 7 5 3 32 32 H 0.97009 * 119.99884 * 74.14023 * 10 8 7 33 33 H 1.07997 * 119.31504 * 359.97438 * 14 13 11 34 34 H 0.96997 * 124.93860 * 0.02562 * 17 16 15 35 35 H 1.07997 * 125.02058 * 179.97438 * 18 17 16 36 36 H 1.08998 * 109.47693 * 135.01576 * 20 19 18 37 37 H 0.96700 * 113.99523 * 59.99936 * 21 20 19 38 38 H 1.48505 * 109.99998 * 180.02562 * 22 20 19 39 39 H 1.48499 * 109.99861 * 301.31826 * 22 20 19 40 40 H 1.08994 * 109.47421 * 263.69133 * 25 24 23 41 41 H 1.09004 * 109.47612 * 23.69435 * 25 24 23 42 42 H 1.09005 * 109.47105 * 143.69365 * 25 24 23 43 43 H 1.08995 * 113.61768 * 139.94027 * 26 8 7 44 44 H 1.09001 * 113.61468 * 270.84246 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 4.0233 0.6366 0.7567 7 6 4.1936 1.1217 -1.3970 8 6 5.1813 2.2266 -0.9866 9 1 6.0815 1.8495 -0.5013 10 7 5.4708 3.1826 -2.0584 11 6 6.6574 3.1412 -2.6959 12 8 7.4875 2.3103 -2.3820 13 6 6.9490 4.1045 -3.7766 14 6 5.9575 4.9822 -4.2313 15 7 6.1971 5.8462 -5.1907 16 6 7.3861 5.9326 -5.7764 17 7 7.8795 6.7310 -6.7766 18 6 9.1913 6.4228 -7.0211 19 6 9.5888 5.4336 -6.2063 20 6 10.9561 4.8017 -6.1611 21 8 10.9052 3.5118 -6.7741 22 14 12.1684 5.8781 -7.0790 23 6 8.4361 5.0821 -5.3733 24 6 8.2186 4.1531 -4.3586 25 6 9.3182 3.2291 -3.9025 26 6 4.1076 2.7143 0.0004 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.5269 1.4115 -2.2091 31 1 4.6656 0.1529 -1.5609 32 1 4.8083 3.8454 -2.3091 33 1 4.9752 4.9479 -3.7838 34 1 7.3733 7.4149 -7.2422 35 1 9.8134 6.9042 -7.7610 36 1 11.2748 4.6987 -5.1238 37 1 10.6285 3.5274 -7.7005 38 1 13.5207 5.2655 -7.0423 39 1 11.7284 6.0523 -8.4866 40 1 9.2214 2.2701 -4.4113 41 1 10.2860 3.6706 -4.1405 42 1 9.2427 3.0782 -2.8256 43 1 4.5102 3.0294 0.9630 44 1 3.4173 3.4404 -0.4290 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_12890568.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:34:54 Heat of formation + Delta-G solvation = -44.696827 kcal Electronic energy + Delta-G solvation = -29810.748251 eV Core-core repulsion = 25503.722993 eV Total energy + Delta-G solvation = -4307.025258 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.86295 -41.97482 -40.98866 -39.44114 -38.59783 -37.81833 -37.42641 -35.23123 -34.60138 -31.94275 -31.10898 -29.36722 -28.90514 -27.01127 -26.80890 -26.31300 -24.71662 -24.00829 -22.54011 -21.78431 -20.81655 -20.57827 -19.38487 -18.95864 -18.65950 -17.98580 -17.70254 -17.47853 -17.40345 -16.87737 -16.61871 -16.49916 -16.11451 -15.87986 -15.56900 -15.44669 -15.18445 -14.70403 -14.52111 -14.30774 -14.11660 -14.04159 -13.73745 -13.63730 -13.58034 -13.46145 -13.31075 -13.07103 -12.99302 -12.51406 -12.43419 -12.27518 -11.85073 -11.79300 -11.77009 -11.41790 -11.27127 -11.14311 -10.55278 -10.26542 -10.13990 -9.62961 -9.12867 -4.83464 -0.34618 -0.08494 1.06641 1.35776 1.41605 1.62651 1.65589 1.68971 1.78073 2.05399 2.15241 2.74568 3.25736 3.29289 3.36452 3.44834 3.56325 3.62346 3.68220 3.71332 3.72629 3.79565 4.03786 4.13370 4.25423 4.26787 4.28492 4.29739 4.38811 4.53897 4.59938 4.61199 4.65756 4.68516 4.73160 4.81065 4.85749 4.95035 5.01178 5.07503 5.21028 5.26103 5.33736 5.39555 5.51519 5.73410 6.21352 6.45036 6.59877 6.65361 6.82641 7.14478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.105 4.105 6 H 0.152 0.848 7 C -0.130 4.130 8 C 0.128 3.872 9 H 0.120 0.880 10 N -0.705 5.705 11 C 0.574 3.426 12 O -0.561 6.561 13 C -0.242 4.242 14 C 0.179 3.821 15 N -0.518 5.518 16 C 0.288 3.712 17 N -0.560 5.560 18 C 0.089 3.911 19 C -0.195 4.195 20 C -0.059 4.059 21 O -0.549 6.549 22 Si 0.779 3.221 23 C -0.165 4.165 24 C 0.064 3.936 25 C -0.112 4.112 26 C -0.119 4.119 27 H 0.061 0.939 28 H 0.127 0.873 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.412 0.588 33 H 0.191 0.809 34 H 0.438 0.562 35 H 0.220 0.780 36 H 0.112 0.888 37 H 0.384 0.616 38 H -0.308 1.308 39 H -0.260 1.260 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 3.830 -1.618 4.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.426 6.426 5 C -0.125 4.125 6 H 0.169 0.831 7 C -0.169 4.169 8 C 0.023 3.977 9 H 0.138 0.862 10 N -0.357 5.357 11 C 0.362 3.638 12 O -0.440 6.440 13 C -0.249 4.249 14 C 0.011 3.989 15 N -0.231 5.231 16 C 0.055 3.945 17 N -0.167 5.167 18 C -0.037 4.037 19 C -0.203 4.203 20 C -0.167 4.167 21 O -0.357 6.357 22 Si 0.682 3.318 23 C -0.172 4.172 24 C 0.056 3.944 25 C -0.168 4.168 26 C -0.157 4.157 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.250 0.750 33 H 0.207 0.793 34 H 0.279 0.721 35 H 0.236 0.764 36 H 0.130 0.870 37 H 0.233 0.767 38 H -0.236 1.236 39 H -0.186 1.186 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.119 0.881 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.119 4.108 -1.897 4.527 hybrid contribution -1.020 -0.989 -0.576 1.533 sum -0.901 3.119 -2.473 4.081 Atomic orbital electron populations 1.23523 0.75079 1.05563 1.02464 1.86523 1.24744 1.33290 1.83487 1.24005 0.92529 0.80982 0.70946 1.90667 1.67877 1.37312 1.46731 1.22469 0.85863 1.01755 1.02390 0.83053 1.23464 0.97700 1.01281 0.94484 1.22437 0.97775 0.89545 0.87929 0.86186 1.45760 1.16760 1.36324 1.36836 1.17974 0.81857 0.82876 0.81058 1.90742 1.47114 1.39122 1.67070 1.20509 0.96293 1.04231 1.03872 1.22934 0.98877 0.87344 0.89771 1.66503 1.20342 1.24493 1.11796 1.18774 0.90401 0.92984 0.92382 1.41611 1.11120 1.33054 1.30895 1.22325 0.83705 0.97406 1.00306 1.20711 0.95965 1.02355 1.01240 1.24793 0.97526 0.89615 1.04727 1.86606 1.90221 1.28244 1.30615 0.94127 0.73545 0.85279 0.78841 1.19750 0.96262 1.00368 1.00864 1.20069 0.93949 0.91168 0.89235 1.21009 0.95535 0.97368 1.02875 1.23334 0.96482 0.94599 1.01264 0.92044 0.85490 0.91953 0.89280 0.88924 0.74984 0.79262 0.72087 0.76365 0.87006 0.76656 1.23614 1.18566 0.91109 0.90626 0.89636 0.88081 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.55 113.37 1.20 1.17 16 2 O -0.36 -1.02 10.56 -51.34 -0.54 -1.56 16 3 C 0.47 1.51 7.49 71.24 0.53 2.04 16 4 O -0.54 -4.74 15.65 21.95 0.34 -4.40 16 5 C -0.11 0.32 4.26 -10.95 -0.05 0.27 16 6 H 0.15 -1.06 8.14 -2.39 -0.02 -1.08 16 7 C -0.13 0.36 7.44 31.18 0.23 0.59 16 8 C 0.13 -0.31 4.21 45.51 0.19 -0.12 16 9 H 0.12 -0.08 7.50 -2.39 -0.02 -0.10 16 10 N -0.71 0.93 5.31 -443.08 -2.35 -1.42 16 11 C 0.57 3.02 7.72 86.74 0.67 3.69 16 12 O -0.56 -6.39 13.11 -3.94 -0.05 -6.44 16 13 C -0.24 -1.27 5.89 -19.99 -0.12 -1.39 16 14 C 0.18 0.40 10.67 85.20 0.91 1.31 16 15 N -0.52 -2.69 10.37 -191.75 -1.99 -4.68 16 16 C 0.29 1.23 8.42 134.02 1.13 2.35 16 17 N -0.56 1.73 6.04 -192.25 -1.16 0.57 16 18 C 0.09 -0.50 10.44 82.97 0.87 0.36 16 19 C -0.20 0.05 5.57 -18.64 -0.10 -0.06 16 20 C -0.06 0.06 2.06 71.23 0.15 0.21 16 21 O -0.55 -1.40 12.88 -148.98 -1.92 -3.32 16 22 Si 0.78 -4.16 30.83 68.60 2.11 -2.04 16 23 C -0.17 -0.89 6.16 -20.19 -0.12 -1.02 16 24 C 0.06 0.48 5.98 -19.25 -0.12 0.36 16 25 C -0.11 -0.87 8.68 71.23 0.62 -0.26 16 26 C -0.12 0.48 7.15 31.12 0.22 0.70 16 27 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 28 H 0.13 -0.81 8.14 -2.38 -0.02 -0.83 16 29 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 30 H 0.09 -0.18 8.10 -2.39 -0.02 -0.20 16 31 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.41 -2.50 6.79 -92.70 -0.63 -3.13 16 33 H 0.19 -1.01 6.43 -2.91 -0.02 -1.03 16 34 H 0.44 -3.70 8.96 -92.71 -0.83 -4.53 16 35 H 0.22 -2.95 6.28 -2.91 -0.02 -2.97 16 36 H 0.11 -0.03 6.05 -2.39 -0.01 -0.04 16 37 H 0.38 -1.39 8.70 -74.06 -0.64 -2.04 16 38 H -0.31 -1.18 7.11 99.48 0.71 -0.48 16 39 H -0.26 1.26 7.00 99.48 0.70 1.96 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.43 5.06 -2.38 -0.01 0.42 16 42 H 0.09 0.85 5.96 -2.38 -0.01 0.83 16 43 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.10 -0.25 7.40 -2.39 -0.02 -0.27 16 Total: 0.00 -26.56 365.77 -0.32 -26.88 By element: Atomic # 1 Polarization: -12.83 SS G_CDS: -0.97 Total: -13.80 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.21 Total: 10.22 kcal Atomic # 7 Polarization: -0.03 SS G_CDS: -5.50 Total: -5.53 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -2.17 Total: -15.72 kcal Atomic # 14 Polarization: -4.16 SS G_CDS: 2.11 Total: -2.04 kcal Total: -26.56 -0.32 -26.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_12890568.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.817 kcal (2) G-P(sol) polarization free energy of solvation -26.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds