Wall clock time and date at job start Sat Mar 6 2021 15:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00276 * 2 1 4 4 O 1.20823 * 119.99739 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99951 * 180.02562 * 3 2 1 6 6 H 1.08997 * 112.85525 * 48.79768 * 5 3 2 7 7 C 1.53785 * 113.61325 * 180.02562 * 5 3 2 8 8 C 1.53787 * 87.08200 * 140.06285 * 7 5 3 9 9 H 1.08998 * 113.61536 * 89.19778 * 8 7 5 10 10 N 1.46497 * 113.61119 * 220.01881 * 8 7 5 11 11 C 1.34776 * 119.99858 * 205.00121 * 10 8 7 12 12 O 1.21566 * 120.00116 * 359.97438 * 11 10 8 13 13 C 1.47717 * 120.00112 * 179.97438 * 11 10 8 14 14 C 1.39714 * 120.02657 * 179.97438 * 13 11 10 15 15 C 1.37667 * 119.97428 * 180.02562 * 14 13 11 16 16 C 1.39498 * 120.02474 * 0.02562 * 15 14 13 17 17 C 1.48286 * 119.97297 * 179.97438 * 16 15 14 18 18 C 1.39399 * 120.12756 * 179.97438 * 17 16 15 19 19 C 1.37998 * 119.87391 * 179.97438 * 18 17 16 20 20 C 1.38337 * 120.12291 * 359.97326 * 19 18 17 21 21 C 1.50706 * 119.86668 * 180.02562 * 20 19 18 22 22 O 1.42903 * 109.47186 * 65.00384 * 21 20 19 23 23 Si 1.86302 * 109.46768 * 185.00064 * 21 20 19 24 24 C 1.38327 * 120.25768 * 0.28033 * 20 19 18 25 25 C 1.37998 * 120.13031 * 359.48861 * 24 20 19 26 26 C 1.39505 * 120.05290 * 0.25174 * 16 15 14 27 27 C 1.37661 * 120.01837 * 359.44618 * 26 16 15 28 28 C 1.53777 * 87.07736 * 334.56670 * 8 7 5 29 29 H 1.09004 * 109.46936 * 59.99898 * 1 2 3 30 30 H 1.08992 * 109.47447 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47173 * 300.00299 * 1 2 3 32 32 H 1.08997 * 113.61729 * 25.51137 * 7 5 3 33 33 H 1.09007 * 113.61137 * 254.60516 * 7 5 3 34 34 H 0.96999 * 120.00138 * 24.99413 * 10 8 7 35 35 H 1.07997 * 120.01008 * 0.02562 * 14 13 11 36 36 H 1.07996 * 119.98238 * 179.97438 * 15 14 13 37 37 H 1.08002 * 120.06246 * 359.95313 * 18 17 16 38 38 H 1.07999 * 119.94051 * 180.02562 * 19 18 17 39 39 H 1.08992 * 109.47155 * 304.99981 * 21 20 19 40 40 H 0.96698 * 113.99763 * 59.99746 * 22 21 20 41 41 H 1.48504 * 109.99775 * 180.02562 * 23 21 20 42 42 H 1.48498 * 110.00038 * 301.31999 * 23 21 20 43 43 H 1.08008 * 119.93523 * 179.72420 * 24 20 19 44 44 H 1.07996 * 120.07045 * 180.23104 * 25 24 20 45 45 H 1.07994 * 119.98471 * 179.72652 * 26 16 15 46 46 H 1.08000 * 120.01110 * 180.25137 * 27 26 16 47 47 H 1.09003 * 113.61361 * 139.98767 * 28 8 7 48 48 H 1.09008 * 113.61417 * 270.88357 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0234 0.6363 -0.7566 7 6 4.1078 2.7141 0.0001 8 6 5.1829 2.2255 0.9853 9 1 6.0823 1.8487 0.4985 10 7 5.4738 3.1806 2.0574 11 6 6.6728 3.1586 2.6724 12 8 7.5128 2.3460 2.3378 13 6 6.9664 4.1219 3.7531 14 6 8.2090 4.0992 4.3913 15 6 8.4813 4.9972 5.3987 16 6 7.5169 5.9291 5.7826 17 6 7.8112 6.8954 6.8682 18 6 6.8500 7.8284 7.2540 19 6 7.1293 8.7249 8.2653 20 6 8.3601 8.6985 8.8962 21 6 8.6588 9.6798 10.0002 22 8 7.7960 9.4248 11.1105 23 14 10.4329 9.4905 10.5362 24 6 9.3197 7.7784 8.5140 25 6 9.0500 6.8739 7.5072 26 6 6.2737 5.9489 5.1500 27 6 6.0015 5.0560 4.1382 28 6 4.1936 1.1219 1.3951 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.4181 3.4399 0.4310 33 1 4.5093 3.0300 -0.9628 34 1 4.8035 3.8288 2.3246 35 1 8.9556 3.3776 4.0945 36 1 9.4416 4.9795 5.8924 37 1 5.8887 7.8498 6.7622 38 1 6.3852 9.4479 8.5654 39 1 8.4949 10.6948 9.6384 40 1 7.8880 8.5378 11.4845 41 1 10.7399 10.4524 11.6252 42 1 10.6774 8.1018 11.0020 43 1 10.2806 7.7653 9.0070 44 1 9.7985 6.1535 7.2121 45 1 5.5263 6.6680 5.4511 46 1 5.0405 5.0741 3.6457 47 1 4.6642 0.1523 1.5586 48 1 3.5273 1.4124 2.2075 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_13158362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:34:57 Heat of formation + Delta-G solvation = -64.173308 kcal Electronic energy + Delta-G solvation = -30796.179815 eV Core-core repulsion = 26362.709534 eV Total energy + Delta-G solvation = -4433.470281 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.150 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.04607 -41.37606 -40.74083 -39.65499 -38.86110 -37.64141 -37.43777 -34.88760 -33.87194 -32.55934 -31.57876 -30.88453 -29.35939 -27.41284 -26.84121 -26.51327 -24.66447 -24.48749 -22.81659 -22.57398 -22.02874 -21.37453 -20.73878 -19.20362 -18.95520 -18.47648 -18.04861 -17.75632 -17.45548 -17.04136 -16.69396 -16.42221 -16.28623 -16.07286 -15.92655 -15.79064 -15.42053 -15.06581 -15.01110 -14.87892 -14.52978 -14.39672 -14.24645 -14.16099 -14.03548 -13.66435 -13.55104 -13.53052 -13.17951 -13.00807 -12.79155 -12.60933 -12.52616 -12.33542 -12.06494 -11.93810 -11.86155 -11.82106 -11.52635 -11.44277 -11.08789 -10.77109 -10.59201 -10.17557 -10.06123 -9.95183 -9.07989 -4.93150 -0.69220 0.35188 0.40800 0.49875 1.04827 1.30026 1.58132 1.64107 1.76742 1.94740 2.13645 2.59749 3.00334 3.22726 3.30742 3.38190 3.45981 3.62092 3.64481 3.66967 3.74261 3.79679 3.88053 4.00423 4.02123 4.05764 4.25134 4.27075 4.27879 4.28696 4.37424 4.48771 4.54775 4.56206 4.61670 4.65103 4.67922 4.69525 4.81594 4.89705 4.91320 4.92362 5.04636 5.08852 5.14469 5.20942 5.26223 5.32196 5.41751 5.45004 5.50025 5.65673 5.80028 5.93455 6.41514 6.46218 6.63618 7.08894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.105 4.105 6 H 0.152 0.848 7 C -0.119 4.119 8 C 0.124 3.876 9 H 0.118 0.882 10 N -0.704 5.704 11 C 0.560 3.440 12 O -0.575 6.575 13 C -0.153 4.153 14 C -0.068 4.068 15 C -0.122 4.122 16 C -0.022 4.022 17 C -0.060 4.060 18 C -0.108 4.108 19 C -0.101 4.101 20 C -0.116 4.116 21 C -0.083 4.083 22 O -0.548 6.548 23 Si 0.764 3.236 24 C -0.121 4.121 25 C -0.107 4.107 26 C -0.122 4.122 27 C -0.076 4.076 28 C -0.130 4.130 29 H 0.062 0.938 30 H 0.127 0.873 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.414 0.586 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.386 0.614 41 H -0.305 1.305 42 H -0.282 1.282 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.093 0.907 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 0.483 -1.270 1.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.124 4.124 6 H 0.169 0.831 7 C -0.157 4.157 8 C 0.019 3.981 9 H 0.136 0.864 10 N -0.355 5.355 11 C 0.349 3.651 12 O -0.456 6.456 13 C -0.156 4.156 14 C -0.087 4.087 15 C -0.140 4.140 16 C -0.023 4.023 17 C -0.060 4.060 18 C -0.126 4.126 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.192 4.192 22 O -0.356 6.356 23 Si 0.670 3.330 24 C -0.139 4.139 25 C -0.124 4.124 26 C -0.139 4.139 27 C -0.094 4.094 28 C -0.168 4.168 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.252 0.748 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.235 0.765 41 H -0.234 1.234 42 H -0.209 1.209 43 H 0.160 0.840 44 H 0.164 0.836 45 H 0.171 0.829 46 H 0.172 0.828 47 H 0.111 0.889 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.165 0.607 -1.002 1.183 hybrid contribution -1.446 -0.419 0.786 1.699 sum -1.611 0.188 -0.216 1.636 Atomic orbital electron populations 1.23526 0.75027 1.05583 1.02486 1.86523 1.24780 1.33247 1.83468 1.23969 0.92469 0.81011 0.70973 1.90664 1.67851 1.37307 1.46712 1.22426 0.85969 1.01681 1.02366 0.83057 1.23341 0.96422 0.94675 1.01234 1.22461 0.97767 0.89771 0.88128 0.86406 1.45794 1.15728 1.37044 1.36963 1.18537 0.81844 0.83050 0.81680 1.90770 1.47910 1.40710 1.66213 1.20004 0.96919 0.99263 0.99414 1.21281 0.95743 0.97593 0.94114 1.21400 1.00389 0.94805 0.97385 1.19151 0.94333 0.94339 0.94446 1.18944 0.95009 0.96030 0.95979 1.21518 0.99686 0.94365 0.97039 1.21112 0.96597 0.98939 0.95278 1.20447 0.95189 0.97704 0.98260 1.25222 1.06322 1.01392 0.86240 1.86579 1.62597 1.38707 1.47758 0.94064 0.76462 0.77303 0.85182 1.21171 0.99310 0.95295 0.98085 1.21475 0.96514 0.98947 0.95483 1.21454 0.96684 0.99750 0.96044 1.21454 0.98872 0.93015 0.96079 1.23426 0.97615 1.01213 0.94594 0.91946 0.85483 0.92002 0.88256 0.88155 0.74782 0.85122 0.83299 0.83739 0.84986 0.85670 0.76505 1.23362 1.20870 0.83967 0.83587 0.82883 0.82822 0.88881 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.80 10.56 -51.42 -0.54 -1.34 16 3 C 0.47 1.23 7.49 71.23 0.53 1.76 16 4 O -0.54 -4.37 15.65 21.97 0.34 -4.02 16 5 C -0.11 0.36 4.26 -11.01 -0.05 0.31 16 6 H 0.15 -1.11 8.14 -2.39 -0.02 -1.13 16 7 C -0.12 0.51 7.15 31.12 0.22 0.73 16 8 C 0.12 -0.30 4.24 45.52 0.19 -0.11 16 9 H 0.12 -0.03 7.46 -2.39 -0.02 -0.05 16 10 N -0.70 1.25 5.30 -443.04 -2.35 -1.10 16 11 C 0.56 2.54 7.77 86.75 0.67 3.22 16 12 O -0.58 -7.11 15.93 -3.92 -0.06 -7.17 16 13 C -0.15 -0.30 5.88 -20.06 -0.12 -0.41 16 14 C -0.07 -0.18 9.58 22.49 0.22 0.03 16 15 C -0.12 0.04 9.41 22.44 0.21 0.25 16 16 C -0.02 0.02 5.88 -19.99 -0.12 -0.10 16 17 C -0.06 0.05 5.88 -20.04 -0.12 -0.06 16 18 C -0.11 0.20 9.43 22.49 0.21 0.42 16 19 C -0.10 0.10 9.67 22.24 0.21 0.31 16 20 C -0.12 0.15 5.36 -19.82 -0.11 0.04 16 21 C -0.08 0.13 2.80 71.24 0.20 0.33 16 22 O -0.55 -1.01 12.83 -148.98 -1.91 -2.92 16 23 Si 0.76 -1.95 29.86 68.60 2.05 0.10 16 24 C -0.12 0.30 8.65 22.23 0.19 0.49 16 25 C -0.11 0.23 9.43 22.49 0.21 0.44 16 26 C -0.12 0.37 9.41 22.44 0.21 0.59 16 27 C -0.08 0.24 9.52 22.49 0.21 0.45 16 28 C -0.13 0.42 7.43 31.12 0.23 0.65 16 29 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 30 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 31 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 32 H 0.10 -0.31 7.41 -2.39 -0.02 -0.32 16 33 H 0.10 -0.60 8.14 -2.38 -0.02 -0.62 16 34 H 0.41 -2.84 6.74 -92.71 -0.63 -3.46 16 35 H 0.13 0.50 7.64 -2.91 -0.02 0.48 16 36 H 0.15 -0.65 6.19 -2.91 -0.02 -0.67 16 37 H 0.14 -0.86 6.19 -2.91 -0.02 -0.88 16 38 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 39 H 0.13 -0.39 7.96 -2.39 -0.02 -0.41 16 40 H 0.39 -1.36 8.70 -74.06 -0.64 -2.01 16 41 H -0.31 -1.71 7.11 99.48 0.71 -1.00 16 42 H -0.28 -0.28 7.01 99.48 0.70 0.41 16 43 H 0.14 -0.81 4.82 -2.91 -0.01 -0.83 16 44 H 0.15 -0.86 6.19 -2.91 -0.02 -0.88 16 45 H 0.15 -1.17 6.19 -2.91 -0.02 -1.19 16 46 H 0.15 -1.43 6.39 -2.91 -0.02 -1.45 16 47 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.09 -0.25 8.10 -2.38 -0.02 -0.27 16 Total: 0.00 -23.70 400.92 1.75 -21.96 By element: Atomic # 1 Polarization: -15.78 SS G_CDS: -0.21 Total: -15.99 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 4.43 Total: 10.49 kcal Atomic # 7 Polarization: 1.25 SS G_CDS: -2.35 Total: -1.10 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -2.17 Total: -15.45 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.05 Total: 0.10 kcal Total: -23.70 1.75 -21.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_13158362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.218 kcal (2) G-P(sol) polarization free energy of solvation -23.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds