Wall clock time and date at job start Sat Mar 6 2021 15:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00112 * 2 1 4 4 O 1.20819 * 120.00352 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99786 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.85023 * 311.20124 * 5 3 2 7 7 C 1.53780 * 113.61551 * 82.50457 * 5 3 2 8 8 C 1.53774 * 87.08247 * 139.97949 * 7 5 3 9 9 H 1.09002 * 113.69023 * 89.12634 * 8 7 5 10 10 N 1.46497 * 113.61737 * 220.01988 * 8 7 5 11 11 C 1.34780 * 120.00042 * 252.50187 * 10 8 7 12 12 O 1.21645 * 120.00265 * 359.97438 * 11 10 8 13 13 C 1.47057 * 120.00073 * 179.97438 * 11 10 8 14 14 C 1.35863 * 125.43089 * 180.02562 * 13 11 10 15 15 C 1.41593 * 107.73352 * 179.97438 * 14 13 11 16 16 C 1.40057 * 133.37988 * 179.97438 * 15 14 13 17 17 C 1.36480 * 119.83105 * 180.02562 * 16 15 14 18 18 C 1.38903 * 120.61116 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.67293 * 179.97438 * 18 17 16 20 20 O 1.42892 * 109.47249 * 120.00388 * 19 18 17 21 21 Si 1.86298 * 109.47032 * 359.97438 * 19 18 17 22 22 C 1.37707 * 120.64763 * 0.24011 * 18 17 16 23 23 C 1.39189 * 119.81444 * 359.48873 * 22 18 17 24 24 N 1.37479 * 133.19384 * 180.14281 * 23 22 18 25 25 C 1.53780 * 87.08417 * 334.56914 * 8 7 5 26 26 H 1.08998 * 109.47132 * 300.00032 * 1 2 3 27 27 H 1.09002 * 109.46493 * 59.99624 * 1 2 3 28 28 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.09001 * 113.61202 * 25.43142 * 7 5 3 30 30 H 1.09002 * 113.61641 * 254.53267 * 7 5 3 31 31 H 0.96999 * 120.00314 * 72.49215 * 10 8 7 32 32 H 1.08003 * 126.13351 * 359.97438 * 14 13 11 33 33 H 1.08003 * 120.08636 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.69425 * 179.97438 * 17 16 15 35 35 H 1.09004 * 109.46453 * 240.00456 * 19 18 17 36 36 H 0.96703 * 114.00176 * 299.99748 * 20 19 18 37 37 H 1.48506 * 109.99834 * 58.68765 * 21 19 18 38 38 H 1.48502 * 110.00011 * 180.02562 * 21 19 18 39 39 H 1.08001 * 120.09491 * 179.72123 * 22 18 17 40 40 H 0.97004 * 125.60753 * 0.32432 * 24 23 22 41 41 H 1.08996 * 113.61390 * 139.97903 * 25 8 7 42 42 H 1.08997 * 113.61293 * 270.89004 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0234 0.6363 0.7566 7 6 4.1917 1.1231 -1.3961 8 6 5.1815 2.2264 -0.9866 9 1 6.0817 1.8492 -0.5013 10 7 5.4710 3.1825 -2.0581 11 6 6.6693 3.1610 -2.6749 12 8 7.5105 2.3480 -2.3414 13 6 6.9597 4.1203 -3.7509 14 6 8.1253 4.1964 -4.4448 15 6 7.9988 5.2462 -5.3866 16 6 8.8590 5.7782 -6.3554 17 6 8.4435 6.8191 -7.1342 18 6 7.1733 7.3583 -6.9753 19 6 6.7365 8.5079 -7.8463 20 8 5.5823 8.1253 -8.5967 21 14 8.1154 8.9609 -9.0143 22 6 6.3112 6.8562 -6.0260 23 6 6.7098 5.7911 -5.2235 24 7 6.0908 5.0877 -4.2175 25 6 4.1079 2.7141 0.0006 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5244 1.4144 -2.2072 30 1 4.6621 0.1537 -1.5611 31 1 4.8004 3.8309 -2.3239 32 1 8.9928 3.5688 -4.3035 33 1 9.8489 5.3663 -6.4853 34 1 9.1087 7.2279 -7.8803 35 1 6.4945 9.3666 -7.2200 36 1 5.7249 7.3654 -9.1776 37 1 8.4769 7.7891 -9.8520 38 1 7.6974 10.0939 -9.8784 39 1 5.3272 7.2852 -5.9071 40 1 5.1916 5.2448 -3.8891 41 1 4.5107 3.0291 0.9632 42 1 3.4176 3.4402 -0.4288 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_13158378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:35:00 Heat of formation + Delta-G solvation = -59.598560 kcal Electronic energy + Delta-G solvation = -26921.425611 eV Core-core repulsion = 22834.717696 eV Total energy + Delta-G solvation = -4086.707916 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.73434 -41.99811 -40.79830 -39.36982 -38.85550 -37.48073 -36.98789 -34.81065 -33.27898 -31.20001 -30.40911 -29.44691 -27.57779 -26.88246 -26.37693 -24.47662 -23.28288 -22.38659 -21.95101 -21.43912 -20.73767 -19.45291 -19.03158 -18.50348 -18.10836 -17.75665 -17.48502 -16.88682 -16.64290 -16.52988 -16.25831 -16.09476 -15.63688 -15.53442 -15.17452 -14.91666 -14.71347 -14.52451 -14.49286 -14.32667 -14.02355 -13.69182 -13.58097 -13.18312 -13.05645 -12.60364 -12.56636 -12.51464 -12.40279 -12.10563 -11.89352 -11.86896 -11.56993 -11.49825 -11.37881 -10.98213 -10.60421 -10.32194 -9.34428 -8.83698 -4.86436 -0.38661 0.52393 0.91818 1.02331 1.34436 1.56944 1.65901 1.77917 1.99542 2.03472 2.13925 2.76223 3.18321 3.26252 3.41593 3.54378 3.60323 3.65812 3.71084 3.73596 3.98473 4.04290 4.22498 4.24461 4.25283 4.29163 4.41686 4.48263 4.50930 4.54667 4.57112 4.65355 4.66473 4.78478 4.88306 4.88496 4.95303 4.99179 5.24955 5.30394 5.38491 5.40874 5.53106 5.57804 5.97668 6.20745 6.39447 6.50194 6.60556 6.89353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.537 6.537 5 C -0.105 4.105 6 H 0.154 0.846 7 C -0.130 4.130 8 C 0.126 3.874 9 H 0.125 0.875 10 N -0.705 5.705 11 C 0.590 3.410 12 O -0.554 6.554 13 C 0.008 3.992 14 C -0.115 4.115 15 C -0.134 4.134 16 C -0.057 4.057 17 C -0.148 4.148 18 C -0.086 4.086 19 C -0.081 4.081 20 O -0.549 6.549 21 Si 0.770 3.230 22 C -0.111 4.111 23 C 0.106 3.894 24 N -0.566 5.566 25 C -0.120 4.120 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.410 0.590 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.127 0.873 36 H 0.386 0.614 37 H -0.283 1.283 38 H -0.306 1.306 39 H 0.133 0.867 40 H 0.430 0.570 41 H 0.102 0.898 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.066 -0.073 1.235 1.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.427 6.427 5 C -0.124 4.124 6 H 0.172 0.828 7 C -0.169 4.169 8 C 0.021 3.979 9 H 0.142 0.858 10 N -0.355 5.355 11 C 0.377 3.623 12 O -0.432 6.432 13 C -0.102 4.102 14 C -0.142 4.142 15 C -0.139 4.139 16 C -0.076 4.076 17 C -0.166 4.166 18 C -0.088 4.088 19 C -0.190 4.190 20 O -0.357 6.357 21 Si 0.675 3.325 22 C -0.132 4.132 23 C -0.004 4.004 24 N -0.172 5.172 25 C -0.158 4.158 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.146 0.854 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.247 0.753 32 H 0.176 0.824 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.145 0.855 36 H 0.235 0.765 37 H -0.209 1.209 38 H -0.235 1.235 39 H 0.151 0.849 40 H 0.270 0.730 41 H 0.120 0.880 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.125 0.152 1.108 1.125 hybrid contribution -2.084 -0.451 -0.360 2.163 sum -1.959 -0.299 0.747 2.118 Atomic orbital electron populations 1.23528 0.75030 1.05613 1.02452 1.86524 1.24768 1.33231 1.83443 1.23996 0.92531 0.81000 0.70946 1.90665 1.67903 1.37343 1.46768 1.22437 0.85916 1.01665 1.02412 0.82835 1.23431 0.97566 1.01339 0.94536 1.22531 0.98095 0.89500 0.87783 0.85756 1.45755 1.15333 1.37149 1.37269 1.17271 0.82279 0.82226 0.80532 1.90859 1.47640 1.39424 1.65230 1.20011 0.92911 0.95988 1.01272 1.21121 0.97783 0.99195 0.96113 1.18451 0.95088 0.99560 1.00791 1.20642 0.99503 0.94888 0.92540 1.20695 0.95912 0.98127 1.01855 1.20086 0.94302 0.97722 0.96703 1.25233 0.97008 0.97726 0.99010 1.86567 1.35230 1.53978 1.59904 0.93924 0.81758 0.77513 0.79269 1.19988 1.01040 0.95969 0.96190 1.18456 0.93245 0.96148 0.92571 1.41813 1.15813 1.28467 1.31122 1.23347 0.96394 0.94716 1.01300 0.91947 0.92068 0.85434 0.89312 0.88553 0.75319 0.82442 0.83347 0.83561 0.85501 0.76451 1.20907 1.23462 0.84882 0.72951 0.87973 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.64 10.57 -51.39 -0.54 -1.18 16 3 C 0.47 0.97 7.48 71.24 0.53 1.50 16 4 O -0.54 -4.19 15.65 21.98 0.34 -3.85 16 5 C -0.11 0.46 4.26 -11.01 -0.05 0.42 16 6 H 0.15 -1.30 8.14 -2.39 -0.02 -1.32 16 7 C -0.13 0.58 7.43 31.12 0.23 0.82 16 8 C 0.13 -0.51 4.24 45.52 0.19 -0.32 16 9 H 0.12 -0.30 7.46 -2.39 -0.02 -0.32 16 10 N -0.70 2.35 5.35 -443.66 -2.37 -0.02 16 11 C 0.59 1.88 7.80 86.56 0.68 2.55 16 12 O -0.55 -5.80 16.44 -4.17 -0.07 -5.86 16 13 C 0.01 0.02 6.97 39.91 0.28 0.30 16 14 C -0.11 -0.46 10.53 22.55 0.24 -0.23 16 15 C -0.13 -0.41 6.16 -21.36 -0.13 -0.54 16 16 C -0.06 0.01 10.06 22.30 0.22 0.23 16 17 C -0.15 0.26 8.59 22.02 0.19 0.45 16 18 C -0.09 0.07 5.39 -19.83 -0.11 -0.04 16 19 C -0.08 0.15 2.81 71.24 0.20 0.35 16 20 O -0.55 -0.73 12.76 -148.98 -1.90 -2.63 16 21 Si 0.77 -2.18 29.75 68.60 2.04 -0.14 16 22 C -0.11 -0.03 9.62 22.37 0.22 0.19 16 23 C 0.11 0.17 7.25 39.14 0.28 0.45 16 24 N -0.57 0.95 6.07 -177.18 -1.08 -0.12 16 25 C -0.12 0.65 7.16 31.12 0.22 0.87 16 26 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 27 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 28 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16 29 H 0.09 -0.33 8.09 -2.39 -0.02 -0.35 16 30 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.41 -3.36 7.78 -92.71 -0.72 -4.09 16 32 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 33 H 0.15 -0.64 8.06 -2.91 -0.02 -0.66 16 34 H 0.15 -0.86 4.82 -2.91 -0.01 -0.88 16 35 H 0.13 -0.46 7.96 -2.38 -0.02 -0.48 16 36 H 0.39 -1.50 8.70 -74.06 -0.64 -2.14 16 37 H -0.28 -0.29 7.11 99.48 0.71 0.42 16 38 H -0.31 -1.60 7.11 99.48 0.71 -0.89 16 39 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 40 H 0.43 -3.38 8.12 -92.71 -0.75 -4.13 16 41 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H 0.10 -0.38 7.41 -2.39 -0.02 -0.40 16 Total: 0.00 -22.87 360.46 -0.16 -23.03 By element: Atomic # 1 Polarization: -16.39 SS G_CDS: -0.98 Total: -17.37 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 4.39 Total: 8.15 kcal Atomic # 7 Polarization: 3.30 SS G_CDS: -3.45 Total: -0.15 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -2.17 Total: -13.52 kcal Atomic # 14 Polarization: -2.18 SS G_CDS: 2.04 Total: -0.14 kcal Total: -22.87 -0.16 -23.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_13158378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.564 kcal (2) G-P(sol) polarization free energy of solvation -22.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds