Wall clock time and date at job start Sat Mar 6 2021 15:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99829 * 2 1 4 4 O 1.20825 * 120.00394 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99955 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.90682 * 48.74678 * 5 3 2 7 7 C 1.53778 * 113.61273 * 180.02562 * 5 3 2 8 8 C 1.53782 * 87.17054 * 140.02508 * 7 5 3 9 9 H 1.09000 * 113.61769 * 89.15826 * 8 7 5 10 10 N 1.46500 * 113.61040 * 219.97464 * 8 7 5 11 11 C 1.34781 * 119.99692 * 204.99476 * 10 8 7 12 12 O 1.21273 * 120.00487 * 0.02562 * 11 10 8 13 13 C 1.50706 * 119.99671 * 180.02562 * 11 10 8 14 14 C 1.50703 * 109.46924 * 185.82867 * 13 11 10 15 15 C 1.39314 * 120.05931 * 80.04166 * 14 13 11 16 16 C 1.48387 * 120.12308 * 0.02562 * 15 14 13 17 17 C 1.39338 * 120.11877 * 236.22236 * 16 15 14 18 18 C 1.38020 * 119.87610 * 179.76403 * 17 16 15 19 19 C 1.38322 * 120.11919 * 0.48821 * 18 17 16 20 20 C 1.50701 * 119.87522 * 179.74602 * 19 18 17 21 21 O 1.42897 * 109.47356 * 120.02574 * 20 19 18 22 22 Si 1.86301 * 109.47296 * 0.02562 * 20 19 18 23 23 C 1.38316 * 120.24555 * 359.76826 * 19 18 17 24 24 C 1.38019 * 120.12295 * 359.97438 * 23 19 18 25 25 C 1.39370 * 119.75528 * 179.74875 * 15 14 13 26 26 C 1.37996 * 119.87631 * 0.52959 * 25 15 14 27 27 C 1.38348 * 120.12181 * 359.72316 * 26 25 15 28 28 C 1.38039 * 120.06183 * 260.31901 * 14 13 11 29 29 C 1.53775 * 87.08061 * 334.52441 * 8 7 5 30 30 H 1.09007 * 109.46863 * 299.99998 * 1 2 3 31 31 H 1.08996 * 109.47055 * 59.99686 * 1 2 3 32 32 H 1.08993 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.08993 * 113.62072 * 25.43084 * 7 5 3 34 34 H 1.09003 * 113.61414 * 254.61100 * 7 5 3 35 35 H 0.97001 * 120.00369 * 25.00332 * 10 8 7 36 36 H 1.08995 * 109.47048 * 305.82589 * 13 11 10 37 37 H 1.09000 * 109.47063 * 65.82904 * 13 11 10 38 38 H 1.08003 * 120.06143 * 359.97438 * 17 16 15 39 39 H 1.08003 * 119.93975 * 180.23822 * 18 17 16 40 40 H 1.09000 * 109.46868 * 240.02376 * 20 19 18 41 41 H 0.96700 * 113.99938 * 179.97438 * 21 20 19 42 42 H 1.48503 * 109.99708 * 60.00751 * 22 20 19 43 43 H 1.48497 * 110.00107 * 181.31761 * 22 20 19 44 44 H 1.08003 * 119.93987 * 179.97438 * 23 19 18 45 45 H 1.07997 * 120.06126 * 179.97438 * 24 23 19 46 46 H 1.08000 * 120.05927 * 180.27292 * 25 15 14 47 47 H 1.07996 * 119.93901 * 179.74474 * 26 25 15 48 48 H 1.07994 * 119.87896 * 180.02562 * 27 26 25 49 49 H 1.08005 * 119.93555 * 359.97438 * 28 14 13 50 50 H 1.08998 * 113.61607 * 139.98814 * 29 8 7 51 51 H 1.09007 * 113.61708 * 270.80251 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0244 0.6361 -0.7558 7 6 4.1077 2.7143 0.0001 8 6 5.1831 2.2282 0.9861 9 1 6.0829 1.8513 0.5000 10 7 5.4732 3.1853 2.0566 11 6 6.6723 3.1652 2.6718 12 8 7.5112 2.3552 2.3389 13 6 6.9705 4.1495 3.7734 14 6 8.4119 4.0135 4.1918 15 6 9.4175 4.6110 3.4350 16 6 9.0728 5.3831 2.2156 17 6 9.6406 5.0437 0.9893 18 6 9.3127 5.7622 -0.1426 19 6 8.4299 6.8239 -0.0593 20 6 8.0801 7.6082 -1.2976 21 8 6.6727 7.5270 -1.5313 22 14 8.9940 6.9015 -2.7592 23 6 7.8674 7.1685 1.1564 24 6 8.1841 6.4535 2.2937 25 6 10.7480 4.4857 3.8306 26 6 11.0633 3.7621 4.9625 27 6 10.0611 3.1664 5.7074 28 6 8.7387 3.2920 5.3223 29 6 4.1947 1.1244 1.3978 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.4175 3.4402 0.4297 34 1 4.5091 3.0303 -0.9628 35 1 4.8024 3.8335 2.3228 36 1 6.7905 5.1626 3.4140 37 1 6.3238 3.9464 4.6270 38 1 10.3335 4.2178 0.9240 39 1 9.7493 5.4976 -1.0943 40 1 8.3660 8.6510 -1.1600 41 1 6.3755 8.0104 -2.3142 42 1 8.6127 5.4800 -2.9575 43 1 8.6822 7.6860 -3.9809 44 1 7.1790 7.9985 1.2159 45 1 7.7446 6.7237 3.2425 46 1 11.5311 4.9505 3.2500 47 1 12.0943 3.6609 5.2677 48 1 10.3123 2.6014 6.5928 49 1 7.9602 2.8251 5.9074 50 1 4.6661 0.1556 1.5629 51 1 3.5291 1.4152 2.2106 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_13158394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:35:03 Heat of formation + Delta-G solvation = -65.835828 kcal Electronic energy + Delta-G solvation = -35183.275287 eV Core-core repulsion = 30594.195295 eV Total energy + Delta-G solvation = -4589.079992 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.166 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.05100 -41.43872 -40.55251 -39.68448 -38.95756 -37.68146 -37.47575 -34.63554 -34.24540 -33.40384 -31.97236 -30.77425 -29.63190 -28.74463 -26.88385 -26.79513 -26.41707 -24.01793 -23.43982 -23.09707 -22.24203 -21.69487 -21.37540 -20.63697 -19.02330 -18.55724 -18.26704 -18.11691 -17.92263 -17.49666 -17.06510 -16.93012 -16.63723 -16.53890 -16.20782 -16.09712 -15.58384 -15.50273 -15.27405 -14.96346 -14.62779 -14.49396 -14.42230 -14.28465 -14.06438 -13.98263 -13.80422 -13.69757 -13.60038 -13.42415 -13.22823 -13.07936 -12.91754 -12.61937 -12.48245 -12.39206 -12.20943 -12.03158 -11.89672 -11.85200 -11.80780 -11.65540 -11.47745 -10.95986 -10.55596 -10.11915 -10.08643 -9.92534 -9.71440 -9.19590 -4.96147 -0.07872 0.40044 0.43406 0.63167 1.00228 1.27676 1.55689 1.60230 1.63353 1.91430 2.23690 2.60756 2.89872 3.18953 3.26612 3.36578 3.55564 3.60731 3.69715 3.70918 3.84706 3.89088 3.93002 3.95870 4.02150 4.06563 4.20578 4.22427 4.24962 4.32704 4.36561 4.43812 4.45610 4.51824 4.53925 4.56348 4.57988 4.64056 4.64956 4.71727 4.76811 4.85120 4.88247 4.99079 5.03218 5.06548 5.13943 5.27686 5.35848 5.43048 5.47763 5.50317 5.55334 5.61046 5.67972 5.94409 6.07875 6.50364 6.57261 6.59708 7.23159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.106 4.106 6 H 0.148 0.852 7 C -0.120 4.120 8 C 0.128 3.872 9 H 0.108 0.892 10 N -0.712 5.712 11 C 0.519 3.481 12 O -0.568 6.568 13 C -0.111 4.111 14 C -0.065 4.065 15 C -0.050 4.050 16 C -0.042 4.042 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.083 4.083 20 C -0.078 4.078 21 O -0.554 6.554 22 Si 0.748 3.252 23 C -0.094 4.094 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.118 4.118 29 C -0.124 4.124 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.414 0.586 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.098 0.902 41 H 0.394 0.606 42 H -0.304 1.304 43 H -0.284 1.284 44 H 0.136 0.864 45 H 0.143 0.857 46 H 0.132 0.868 47 H 0.141 0.859 48 H 0.140 0.860 49 H 0.137 0.863 50 H 0.092 0.908 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 2.153 1.612 2.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.125 4.125 6 H 0.166 0.834 7 C -0.158 4.158 8 C 0.022 3.978 9 H 0.126 0.874 10 N -0.364 5.364 11 C 0.307 3.693 12 O -0.446 6.446 13 C -0.150 4.150 14 C -0.065 4.065 15 C -0.050 4.050 16 C -0.043 4.043 17 C -0.125 4.125 18 C -0.136 4.136 19 C -0.083 4.083 20 C -0.188 4.188 21 O -0.364 6.364 22 Si 0.655 3.345 23 C -0.112 4.112 24 C -0.132 4.132 25 C -0.135 4.135 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.136 4.136 29 C -0.163 4.163 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.251 0.749 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.116 0.884 41 H 0.245 0.755 42 H -0.232 1.232 43 H -0.211 1.211 44 H 0.154 0.846 45 H 0.161 0.839 46 H 0.150 0.850 47 H 0.159 0.841 48 H 0.158 0.842 49 H 0.155 0.845 50 H 0.111 0.889 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.541 1.152 1.123 1.698 hybrid contribution -1.733 0.538 -0.443 1.868 sum -1.192 1.690 0.680 2.178 Atomic orbital electron populations 1.23537 0.74950 1.05635 1.02500 1.86525 1.24841 1.33081 1.83455 1.23900 0.92329 0.81058 0.70986 1.90664 1.67813 1.37344 1.46720 1.22455 0.86173 1.01345 1.02557 0.83439 1.23295 0.96776 0.94800 1.00931 1.22279 0.97144 0.89965 0.88408 0.87438 1.45870 1.16285 1.37056 1.37179 1.20866 0.81280 0.84269 0.82877 1.90710 1.47419 1.40704 1.65786 1.20935 0.94752 1.00738 0.98559 1.19433 0.93811 0.98148 0.95130 1.18723 0.93588 0.98564 0.94097 1.18858 0.97458 0.95525 0.92410 1.21217 1.00019 0.99458 0.91780 1.21015 0.98749 0.95168 0.98689 1.19490 0.97827 0.96394 0.94622 1.24878 0.86611 1.04021 1.03262 1.86536 1.21326 1.77394 1.51152 0.94248 0.89525 0.76225 0.74543 1.21063 0.98774 0.99922 0.91401 1.21381 0.97704 0.94861 0.99254 1.21384 0.95260 0.99362 0.97504 1.21380 1.00506 0.97320 0.95106 1.21479 0.92769 0.99536 1.00508 1.21214 0.97463 0.98302 0.96594 1.23436 0.97498 1.01065 0.94320 0.91916 0.92022 0.85367 0.88344 0.89412 0.74930 0.86161 0.85254 0.85728 0.84687 0.88373 0.75534 1.23151 1.21063 0.84566 0.83931 0.85008 0.84150 0.84212 0.84491 0.88944 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -1.31 10.57 -51.43 -0.54 -1.86 16 3 C 0.47 2.20 7.49 71.24 0.53 2.73 16 4 O -0.54 -5.51 15.65 21.97 0.34 -5.17 16 5 C -0.11 0.07 4.27 -10.92 -0.05 0.02 16 6 H 0.15 -0.61 8.14 -2.39 -0.02 -0.63 16 7 C -0.12 0.03 7.15 31.12 0.22 0.25 16 8 C 0.13 0.07 4.24 45.52 0.19 0.27 16 9 H 0.11 0.44 7.46 -2.39 -0.02 0.42 16 10 N -0.71 0.09 5.35 -440.04 -2.36 -2.27 16 11 C 0.52 2.32 7.60 87.66 0.67 2.98 16 12 O -0.57 -7.41 15.64 -3.01 -0.05 -7.45 16 13 C -0.11 0.06 5.31 29.10 0.15 0.22 16 14 C -0.06 -0.25 4.39 -19.65 -0.09 -0.33 16 15 C -0.05 -0.26 5.38 -20.04 -0.11 -0.37 16 16 C -0.04 -0.19 4.73 -20.04 -0.09 -0.28 16 17 C -0.11 -0.55 9.62 22.48 0.22 -0.34 16 18 C -0.12 -0.42 8.65 22.24 0.19 -0.23 16 19 C -0.08 -0.23 5.43 -19.83 -0.11 -0.34 16 20 C -0.08 0.03 2.81 71.24 0.20 0.23 16 21 O -0.55 -0.93 12.74 -148.98 -1.90 -2.83 16 22 Si 0.75 -0.38 29.78 68.60 2.04 1.67 16 23 C -0.09 -0.17 9.59 22.24 0.21 0.04 16 24 C -0.11 -0.17 7.84 22.48 0.18 0.00 16 25 C -0.12 -0.48 9.63 22.48 0.22 -0.27 16 26 C -0.13 -0.32 10.03 22.24 0.22 -0.10 16 27 C -0.13 -0.28 10.04 22.31 0.22 -0.06 16 28 C -0.12 -0.33 9.66 22.24 0.21 -0.12 16 29 C -0.12 0.15 7.44 31.21 0.23 0.39 16 30 H 0.06 -0.02 8.13 -2.38 -0.02 -0.04 16 31 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 32 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H 0.10 0.10 7.41 -2.39 -0.02 0.08 16 34 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.41 -2.06 8.73 -92.71 -0.81 -2.87 16 36 H 0.12 -0.40 4.85 -2.39 -0.01 -0.41 16 37 H 0.13 -0.78 8.01 -2.39 -0.02 -0.79 16 38 H 0.12 0.61 8.06 -2.91 -0.02 0.59 16 39 H 0.14 0.08 4.86 -2.91 -0.01 0.07 16 40 H 0.10 -0.45 7.96 -2.39 -0.02 -0.47 16 41 H 0.39 -2.35 8.74 -74.06 -0.65 -2.99 16 42 H -0.30 -2.31 7.11 99.48 0.71 -1.61 16 43 H -0.28 -0.89 7.11 99.48 0.71 -0.18 16 44 H 0.14 -0.09 8.06 -2.91 -0.02 -0.11 16 45 H 0.14 -0.34 7.07 -2.91 -0.02 -0.36 16 46 H 0.13 0.20 8.06 -2.91 -0.02 0.17 16 47 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 48 H 0.14 -0.27 8.06 -2.91 -0.02 -0.29 16 49 H 0.14 -0.16 8.04 -2.91 -0.02 -0.18 16 50 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 51 H 0.09 -0.13 8.10 -2.38 -0.02 -0.15 16 Total: 0.00 -24.81 426.16 1.73 -23.07 By element: Atomic # 1 Polarization: -10.59 SS G_CDS: -0.44 Total: -11.03 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 4.63 Total: 5.88 kcal Atomic # 7 Polarization: 0.09 SS G_CDS: -2.36 Total: -2.27 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -2.14 Total: -17.31 kcal Atomic # 14 Polarization: -0.38 SS G_CDS: 2.04 Total: 1.67 kcal Total: -24.81 1.73 -23.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_13158394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.762 kcal (2) G-P(sol) polarization free energy of solvation -24.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds