Wall clock time and date at job start Sat Mar 6 2021 15:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99592 * 2 1 4 4 O 1.20821 * 120.00511 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99633 * 180.02562 * 3 2 1 6 6 H 1.08999 * 112.85420 * 48.79685 * 5 3 2 7 7 C 1.53784 * 113.61424 * 179.97438 * 5 3 2 8 8 C 1.53778 * 87.08328 * 139.97741 * 7 5 3 9 9 H 1.09004 * 113.61390 * 89.19495 * 8 7 5 10 10 N 1.46495 * 113.61725 * 220.02015 * 8 7 5 11 11 C 1.34772 * 120.00277 * 203.47071 * 10 8 7 12 12 O 1.21581 * 120.00141 * 359.97438 * 11 10 8 13 13 C 1.47660 * 120.00353 * 179.97438 * 11 10 8 14 14 C 1.40162 * 119.97023 * 0.02562 * 13 11 10 15 15 C 1.36357 * 120.66881 * 180.02562 * 14 13 11 16 16 C 1.39326 * 120.23221 * 0.23681 * 15 14 13 17 17 N 1.37408 * 133.24521 * 180.45293 * 16 15 14 18 18 C 1.36860 * 109.98020 * 179.55869 * 17 16 15 19 19 C 1.34194 * 109.96939 * 359.74398 * 18 17 16 20 20 C 1.50696 * 126.53922 * 180.02562 * 19 18 17 21 21 O 1.42901 * 109.46850 * 254.96825 * 20 19 18 22 22 Si 1.86299 * 109.47266 * 14.97016 * 20 19 18 23 23 C 1.40911 * 119.64436 * 359.51441 * 16 15 14 24 24 C 1.39189 * 119.97539 * 180.02562 * 13 11 10 25 25 C 1.53783 * 87.17457 * 334.60982 * 8 7 5 26 26 H 1.09001 * 109.46472 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47147 * 300.00254 * 1 2 3 28 28 H 1.08998 * 109.46569 * 60.00298 * 1 2 3 29 29 H 1.08996 * 113.61463 * 25.42614 * 7 5 3 30 30 H 1.08997 * 113.61140 * 254.52716 * 7 5 3 31 31 H 0.97001 * 119.99823 * 23.46607 * 10 8 7 32 32 H 1.08002 * 119.67002 * 359.97438 * 14 13 11 33 33 H 1.08002 * 119.88034 * 179.97438 * 15 14 13 34 34 H 0.96998 * 125.00512 * 359.29423 * 17 16 15 35 35 H 1.07997 * 125.01750 * 179.75859 * 18 17 16 36 36 H 1.09005 * 109.47154 * 134.97418 * 20 19 18 37 37 H 0.96706 * 113.99475 * 180.02562 * 21 20 19 38 38 H 1.48504 * 109.99975 * 178.67908 * 22 20 19 39 39 H 1.48498 * 110.00192 * 299.99842 * 22 20 19 40 40 H 1.08002 * 120.30092 * 0.02562 * 24 13 11 41 41 H 1.08993 * 113.61535 * 139.93753 * 25 8 7 42 42 H 1.09000 * 113.61715 * 270.84288 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0234 0.6365 -0.7566 7 6 4.1077 2.7143 -0.0011 8 6 5.1814 2.2272 0.9862 9 1 6.0816 1.8497 0.5012 10 7 5.4708 3.1837 2.0574 11 6 6.6573 3.1427 2.6952 12 8 7.4875 2.3115 2.3818 13 6 6.9493 4.1071 3.7745 14 6 5.9916 5.0647 4.1358 15 6 6.2464 5.9624 5.1300 16 6 7.4689 5.9412 5.7980 17 7 7.9966 6.6934 6.8197 18 6 9.2572 6.2540 7.1211 19 6 9.5842 5.2214 6.3289 20 6 10.8820 4.4555 6.3430 21 8 11.6726 4.8375 5.2156 22 14 11.8115 4.8377 7.9116 23 6 8.4379 4.9800 5.4478 24 6 8.1751 4.0645 4.4324 25 6 4.1937 1.1224 1.3971 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 3.4174 3.4406 0.4277 30 1 4.5105 3.0289 -0.9639 31 1 4.8083 3.8466 2.3077 32 1 5.0426 5.0924 3.6209 33 1 5.4995 6.6951 5.3977 34 1 7.5439 7.4299 7.2596 35 1 9.8946 6.6758 7.8840 36 1 10.6737 3.3866 6.2953 37 1 12.5243 4.3826 5.1603 38 1 13.0785 4.0641 7.9525 39 1 12.1017 6.2920 7.9886 40 1 8.9161 3.3286 4.1570 41 1 4.6657 0.1539 1.5615 42 1 3.5269 1.4127 2.2090 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_13287722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:35:11 Heat of formation + Delta-G solvation = -60.002425 kcal Electronic energy + Delta-G solvation = -27115.782965 eV Core-core repulsion = 23029.057537 eV Total energy + Delta-G solvation = -4086.725429 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46144 -41.97349 -40.90173 -39.25264 -37.95492 -37.51883 -37.38244 -34.65644 -33.37694 -30.95562 -30.55837 -29.29732 -26.98244 -26.82928 -26.44068 -24.76192 -23.47370 -22.47332 -21.59873 -20.87025 -20.40938 -19.07224 -18.98683 -18.50619 -18.35139 -18.02518 -17.44890 -17.19296 -16.84505 -16.31453 -15.95876 -15.86257 -15.56790 -15.33990 -15.01938 -14.86465 -14.79381 -14.47479 -14.31568 -14.09418 -13.79965 -13.63697 -13.51944 -13.45482 -13.01174 -12.78570 -12.59482 -12.51625 -12.32120 -12.14832 -11.85016 -11.82260 -11.79956 -11.42869 -11.05775 -10.79378 -10.36883 -10.16946 -9.33405 -8.81652 -4.87887 -0.15562 0.20033 1.05925 1.34162 1.48533 1.64388 1.65698 1.82141 1.97714 2.09765 2.18770 2.86927 3.24416 3.32331 3.53482 3.62436 3.67505 3.72207 3.76862 3.80807 4.02091 4.03970 4.13269 4.26294 4.27102 4.29028 4.41317 4.48168 4.54470 4.58763 4.61837 4.63922 4.68967 4.79174 4.83748 4.92647 5.00373 5.08375 5.27314 5.32505 5.33918 5.44960 5.52610 5.57173 5.97800 6.48044 6.57504 6.64484 6.64841 7.15893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.105 4.105 6 H 0.151 0.849 7 C -0.118 4.118 8 C 0.123 3.877 9 H 0.114 0.886 10 N -0.703 5.703 11 C 0.565 3.435 12 O -0.583 6.583 13 C -0.180 4.180 14 C -0.067 4.067 15 C -0.126 4.126 16 C 0.111 3.889 17 N -0.572 5.572 18 C 0.078 3.922 19 C -0.181 4.181 20 C -0.064 4.064 21 O -0.564 6.564 22 Si 0.784 3.216 23 C -0.129 4.129 24 C -0.018 4.018 25 C -0.129 4.129 26 H 0.127 0.873 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.414 0.586 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.439 0.561 35 H 0.205 0.795 36 H 0.071 0.929 37 H 0.390 0.610 38 H -0.293 1.293 39 H -0.279 1.279 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 1.812 5.116 6.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.124 4.124 6 H 0.169 0.831 7 C -0.156 4.156 8 C 0.018 3.982 9 H 0.132 0.868 10 N -0.355 5.355 11 C 0.354 3.646 12 O -0.464 6.464 13 C -0.184 4.184 14 C -0.087 4.087 15 C -0.146 4.146 16 C 0.001 3.999 17 N -0.175 5.175 18 C -0.049 4.049 19 C -0.188 4.188 20 C -0.172 4.172 21 O -0.373 6.373 22 Si 0.687 3.313 23 C -0.134 4.134 24 C -0.037 4.037 25 C -0.168 4.168 26 H 0.145 0.855 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.253 0.747 32 H 0.176 0.824 33 H 0.178 0.822 34 H 0.280 0.720 35 H 0.222 0.778 36 H 0.089 0.911 37 H 0.240 0.760 38 H -0.220 1.220 39 H -0.205 1.205 40 H 0.130 0.870 41 H 0.110 0.890 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.127 2.323 5.205 6.502 hybrid contribution 0.171 0.136 -1.028 1.051 sum -2.957 2.458 4.177 5.677 Atomic orbital electron populations 1.23531 0.75009 1.05590 1.02499 1.86527 1.24802 1.33224 1.83474 1.23938 0.92408 0.81017 0.70963 1.90660 1.67831 1.37293 1.46719 1.22454 0.86034 1.01638 1.02318 0.83142 1.23326 0.96392 0.94718 1.01127 1.22440 0.97678 0.89865 0.88198 0.86796 1.45734 1.16872 1.36214 1.36658 1.18438 0.81616 0.83021 0.81489 1.90757 1.48268 1.40087 1.67283 1.19582 0.96860 1.00994 1.00976 1.20882 0.98729 0.92794 0.96291 1.20054 0.94727 1.02216 0.97627 1.18650 0.95506 0.93449 0.92263 1.41731 1.14283 1.30964 1.30537 1.22083 0.86725 0.95192 1.00908 1.19818 0.94939 1.02401 1.01620 1.24538 0.92924 0.99983 0.99743 1.86588 1.34372 1.69549 1.46805 0.94125 0.79553 0.77764 0.79899 1.19207 0.95708 0.98787 0.99697 1.20590 0.95255 0.95817 0.92082 1.23454 0.97603 1.01136 0.94580 0.85471 0.91958 0.91954 0.88110 0.88218 0.74715 0.82366 0.82172 0.71984 0.77843 0.91079 0.76048 1.21959 1.20507 0.86969 0.88991 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.36 -1.04 10.57 -51.41 -0.54 -1.59 16 3 C 0.47 1.61 7.49 71.24 0.53 2.15 16 4 O -0.54 -4.73 15.65 21.98 0.34 -4.38 16 5 C -0.11 0.23 4.26 -10.95 -0.05 0.19 16 6 H 0.15 -0.91 8.14 -2.39 -0.02 -0.93 16 7 C -0.12 0.34 7.15 31.12 0.22 0.56 16 8 C 0.12 -0.06 4.21 45.52 0.19 0.14 16 9 H 0.11 0.25 7.50 -2.38 -0.02 0.23 16 10 N -0.70 -0.43 5.31 -443.09 -2.35 -2.78 16 11 C 0.56 4.62 7.76 86.73 0.67 5.29 16 12 O -0.58 -9.59 15.95 -3.97 -0.06 -9.65 16 13 C -0.18 -1.15 5.87 -20.09 -0.12 -1.27 16 14 C -0.07 0.05 9.46 22.30 0.21 0.26 16 15 C -0.13 0.23 10.00 22.09 0.22 0.45 16 16 C 0.11 0.21 7.27 39.19 0.28 0.49 16 17 N -0.57 2.05 6.05 -187.48 -1.13 0.91 16 18 C 0.08 -0.14 10.43 82.99 0.87 0.73 16 19 C -0.18 -0.80 5.61 -18.61 -0.10 -0.91 16 20 C -0.06 -0.18 3.05 71.23 0.22 0.03 16 21 O -0.56 -3.74 12.86 -148.98 -1.92 -5.65 16 22 Si 0.78 -2.08 30.80 68.60 2.11 0.04 16 23 C -0.13 -0.97 6.34 -20.21 -0.13 -1.10 16 24 C -0.02 -0.18 9.64 22.73 0.22 0.04 16 25 C -0.13 0.22 7.44 31.18 0.23 0.45 16 26 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 27 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 28 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 29 H 0.10 -0.20 7.40 -2.39 -0.02 -0.22 16 30 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.41 -2.07 6.71 -92.71 -0.62 -2.69 16 32 H 0.16 -1.23 6.36 -2.91 -0.02 -1.25 16 33 H 0.16 -1.37 8.06 -2.91 -0.02 -1.39 16 34 H 0.44 -4.78 8.96 -92.71 -0.83 -5.61 16 35 H 0.21 -1.69 6.30 -2.91 -0.02 -1.71 16 36 H 0.07 0.15 7.96 -2.38 -0.02 0.13 16 37 H 0.39 -0.55 8.74 -74.05 -0.65 -1.19 16 38 H -0.29 -0.77 7.11 99.48 0.71 -0.06 16 39 H -0.28 -0.35 7.04 99.48 0.70 0.35 16 40 H 0.11 1.53 7.64 -2.91 -0.02 1.50 16 41 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.09 -0.13 8.10 -2.39 -0.02 -0.15 16 Total: 0.00 -29.23 360.47 0.15 -29.08 By element: Atomic # 1 Polarization: -13.68 SS G_CDS: -0.97 Total: -14.65 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 4.67 Total: 8.68 kcal Atomic # 7 Polarization: 1.62 SS G_CDS: -3.49 Total: -1.87 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -2.18 Total: -21.27 kcal Atomic # 14 Polarization: -2.08 SS G_CDS: 2.11 Total: 0.04 kcal Total: -29.23 0.15 -29.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_13287722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.923 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds