Wall clock time and date at job start Sat Mar 6 2021 15:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00149 * 2 1 4 4 O 1.20830 * 119.99570 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00177 * 179.97438 * 3 2 1 6 6 H 1.09005 * 112.85054 * 48.79834 * 5 3 2 7 7 C 1.53783 * 113.61480 * 179.97438 * 5 3 2 8 8 C 1.53781 * 87.07895 * 139.98156 * 7 5 3 9 9 H 1.09001 * 113.61318 * 89.20623 * 8 7 5 10 10 N 1.46510 * 113.61053 * 220.01666 * 8 7 5 11 11 C 1.34775 * 119.99497 * 203.46857 * 10 8 7 12 12 O 1.21581 * 120.00525 * 0.02562 * 11 10 8 13 13 C 1.47609 * 119.99545 * 180.02562 * 11 10 8 14 14 C 1.39720 * 120.08578 * 0.02562 * 13 11 10 15 15 C 1.37720 * 119.90563 * 179.97438 * 14 13 11 16 16 C 1.50705 * 119.95114 * 179.97438 * 15 14 13 17 17 C 1.38970 * 120.09156 * 359.97438 * 15 14 13 18 18 O 1.35717 * 119.90963 * 179.97438 * 17 15 14 19 19 C 1.39017 * 120.17716 * 0.02562 * 17 15 14 20 20 C 1.50701 * 119.95543 * 180.02562 * 19 17 15 21 21 O 1.42905 * 109.46937 * 285.00025 * 20 19 17 22 22 Si 1.86301 * 109.47149 * 164.99954 * 20 19 17 23 23 C 1.37680 * 120.08608 * 0.27349 * 19 17 15 24 24 C 1.53778 * 87.17519 * 334.61044 * 8 7 5 25 25 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47217 * 300.00431 * 1 2 3 27 27 H 1.08998 * 109.46965 * 60.00525 * 1 2 3 28 28 H 1.08993 * 113.61652 * 25.43089 * 7 5 3 29 29 H 1.09004 * 113.61117 * 254.53005 * 7 5 3 30 30 H 0.97001 * 119.99737 * 23.47277 * 10 8 7 31 31 H 1.07999 * 120.04459 * 0.02562 * 14 13 11 32 32 H 1.08990 * 109.47041 * 270.02019 * 16 15 14 33 33 H 1.08998 * 109.46960 * 30.02481 * 16 15 14 34 34 H 1.09009 * 109.47026 * 150.01522 * 16 15 14 35 35 H 0.96697 * 114.00031 * 270.02240 * 18 17 15 36 36 H 1.09001 * 109.46927 * 44.99769 * 20 19 17 37 37 H 0.96691 * 114.00079 * 59.99815 * 21 20 19 38 38 H 1.48493 * 109.99964 * 178.68005 * 22 20 19 39 39 H 1.48498 * 110.00005 * 299.99971 * 22 20 19 40 40 H 1.08001 * 120.04316 * 179.70410 * 23 19 17 41 41 H 1.08996 * 113.61822 * 139.94073 * 24 8 7 42 42 H 1.09000 * 113.61350 * 270.84503 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0240 0.6361 -0.7549 7 6 4.1078 2.7142 -0.0001 8 6 5.1806 2.2274 0.9882 9 1 6.0812 1.8498 0.5040 10 7 5.4692 3.1844 2.0593 11 6 6.6554 3.1435 2.6979 12 8 7.4861 2.3127 2.3849 13 6 6.9460 4.1073 3.7775 14 6 5.9925 5.0624 4.1390 15 6 6.2673 5.9596 5.1471 16 6 5.2398 6.9906 5.5376 17 6 7.4907 5.9154 5.8048 18 8 7.7579 6.8017 6.7974 19 6 8.4421 4.9666 5.4480 20 6 9.7669 4.9229 6.1649 21 8 10.5858 6.0058 5.7190 22 14 10.6190 3.3075 5.7970 23 6 8.1774 4.0702 4.4371 24 6 4.1926 1.1228 1.3987 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 3.4172 3.4407 0.4280 29 1 4.5112 3.0284 -0.9628 30 1 4.8066 3.8474 2.3088 31 1 5.0410 5.0966 3.6292 32 1 5.3857 7.8922 4.9428 33 1 4.2406 6.5941 5.3574 34 1 5.3500 7.2311 6.5951 35 1 8.1736 7.6198 6.4927 36 1 9.6019 5.0103 7.2388 37 1 10.2036 6.8795 5.8787 38 1 11.9408 3.2652 6.4724 39 1 9.7775 2.1733 6.2560 40 1 8.9188 3.3364 4.1572 41 1 4.6644 0.1542 1.5639 42 1 3.5252 1.4134 2.2100 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_13287732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:35:19 Heat of formation + Delta-G solvation = -145.008744 kcal Electronic energy + Delta-G solvation = -26859.461531 eV Core-core repulsion = 22772.245952 eV Total energy + Delta-G solvation = -4087.215579 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06513 -41.63712 -40.61996 -39.17506 -37.75679 -37.61917 -37.40913 -34.78927 -33.97253 -31.82158 -29.36230 -28.02495 -27.19968 -26.82006 -26.68982 -24.75218 -22.54790 -22.09457 -21.58704 -20.64160 -19.51732 -18.99187 -18.81572 -18.10990 -18.00646 -17.52016 -17.38269 -16.81713 -16.40310 -16.21571 -16.10409 -15.93075 -15.37984 -15.07276 -14.65599 -14.48705 -14.33603 -14.24283 -14.15179 -13.80913 -13.63049 -13.53440 -13.35369 -13.02147 -12.94470 -12.77140 -12.50353 -12.34078 -12.30642 -12.14934 -11.85204 -11.79601 -11.42680 -11.36908 -11.21390 -11.01692 -10.21636 -9.96706 -9.68842 -4.95657 -0.43949 0.06129 1.06208 1.27430 1.50489 1.61622 1.65191 1.82601 2.11673 2.52938 3.04792 3.25282 3.32327 3.38586 3.55520 3.61342 3.67458 3.76950 3.79612 3.99368 4.03642 4.08478 4.25562 4.28325 4.31533 4.36880 4.53188 4.58700 4.60380 4.64375 4.68337 4.69443 4.79099 4.84768 4.94385 5.00179 5.04394 5.11473 5.18055 5.28035 5.33470 5.45309 5.57531 6.41254 6.51492 6.64950 6.70600 7.08616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.106 4.106 6 H 0.152 0.848 7 C -0.118 4.118 8 C 0.125 3.875 9 H 0.121 0.879 10 N -0.703 5.703 11 C 0.562 3.438 12 O -0.567 6.567 13 C -0.149 4.149 14 C -0.059 4.059 15 C -0.118 4.118 16 C -0.112 4.112 17 C 0.145 3.855 18 O -0.498 6.498 19 C -0.154 4.154 20 C -0.068 4.068 21 O -0.541 6.541 22 Si 0.782 3.218 23 C -0.056 4.056 24 C -0.131 4.131 25 H 0.126 0.874 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.414 0.586 31 H 0.161 0.839 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.414 0.586 36 H 0.080 0.920 37 H 0.377 0.623 38 H -0.285 1.285 39 H -0.277 1.277 40 H 0.140 0.860 41 H 0.092 0.908 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 3.043 -1.896 5.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.125 4.125 6 H 0.170 0.830 7 C -0.156 4.156 8 C 0.020 3.980 9 H 0.139 0.861 10 N -0.354 5.354 11 C 0.351 3.649 12 O -0.447 6.447 13 C -0.152 4.152 14 C -0.077 4.077 15 C -0.118 4.118 16 C -0.169 4.169 17 C 0.100 3.900 18 O -0.312 6.312 19 C -0.155 4.155 20 C -0.177 4.177 21 O -0.348 6.348 22 Si 0.685 3.315 23 C -0.074 4.074 24 C -0.170 4.170 25 H 0.144 0.856 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.252 0.748 31 H 0.178 0.822 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.275 0.725 36 H 0.098 0.902 37 H 0.226 0.774 38 H -0.212 1.212 39 H -0.203 1.203 40 H 0.158 0.842 41 H 0.111 0.889 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.168 1.126 -1.614 3.729 hybrid contribution -1.120 1.559 1.037 2.182 sum -4.288 2.685 -0.577 5.092 Atomic orbital electron populations 1.23520 0.75078 1.05539 1.02469 1.86526 1.24735 1.33298 1.83470 1.23998 0.92521 0.80984 0.70942 1.90664 1.67870 1.37308 1.46750 1.22470 0.85884 1.01802 1.02353 0.83035 1.23330 0.96400 0.94584 1.01256 1.22480 0.97895 0.89599 0.87997 0.86118 1.45774 1.16868 1.36152 1.36648 1.18317 0.81909 0.83206 0.81513 1.90792 1.47829 1.39385 1.66705 1.19858 0.96304 0.99389 0.99649 1.21383 0.98982 0.91938 0.95414 1.20423 0.96070 0.99383 0.95955 1.20772 0.96579 0.96830 1.02677 1.18411 0.92062 0.91650 0.87910 1.84696 1.83194 1.31649 1.31703 1.20559 0.97271 0.99012 0.98652 1.25203 0.91693 1.01910 0.98936 1.86782 1.46169 1.16932 1.84904 0.92104 0.76674 0.71671 0.91080 1.21010 0.96167 0.97006 0.93247 1.23465 0.97693 1.01300 0.94521 0.85551 0.92026 0.91941 0.88254 0.87990 0.74785 0.82164 0.89423 0.89947 0.91057 0.72479 0.90241 0.77421 1.21236 1.20275 0.84235 0.88890 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.68 10.57 -51.40 -0.54 -1.22 16 3 C 0.47 1.00 7.49 71.23 0.53 1.53 16 4 O -0.54 -4.10 15.65 21.95 0.34 -3.75 16 5 C -0.11 0.44 4.26 -10.96 -0.05 0.39 16 6 H 0.15 -1.22 8.14 -2.38 -0.02 -1.24 16 7 C -0.12 0.64 7.16 31.12 0.22 0.86 16 8 C 0.13 -0.46 4.21 45.51 0.19 -0.27 16 9 H 0.12 -0.22 7.50 -2.39 -0.02 -0.24 16 10 N -0.70 2.13 5.31 -443.12 -2.35 -0.22 16 11 C 0.56 1.91 7.76 86.72 0.67 2.58 16 12 O -0.57 -6.08 15.96 -3.97 -0.06 -6.14 16 13 C -0.15 -0.23 5.88 -20.08 -0.12 -0.35 16 14 C -0.06 0.21 9.18 22.51 0.21 0.42 16 15 C -0.12 0.35 5.89 -19.81 -0.12 0.23 16 16 C -0.11 0.77 9.78 71.24 0.70 1.47 16 17 C 0.15 -0.12 6.62 22.63 0.15 0.03 16 18 O -0.50 1.97 11.52 -90.39 -1.04 0.93 16 19 C -0.15 -0.30 5.27 -19.81 -0.10 -0.41 16 20 C -0.07 -0.15 2.33 71.24 0.17 0.01 16 21 O -0.54 -0.55 12.65 -148.98 -1.89 -2.43 16 22 Si 0.78 3.36 30.17 68.60 2.07 5.43 16 23 C -0.06 -0.21 8.20 22.50 0.18 -0.02 16 24 C -0.13 0.51 7.44 31.18 0.23 0.74 16 25 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H 0.06 -0.09 8.13 -2.38 -0.02 -0.11 16 27 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 28 H 0.10 -0.42 7.40 -2.39 -0.02 -0.43 16 29 H 0.10 -0.74 8.14 -2.38 -0.02 -0.76 16 30 H 0.41 -3.39 6.73 -92.71 -0.62 -4.01 16 31 H 0.16 -1.61 6.39 -2.91 -0.02 -1.63 16 32 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 33 H 0.08 -0.71 8.08 -2.39 -0.02 -0.73 16 34 H 0.07 -0.36 7.52 -2.38 -0.02 -0.38 16 35 H 0.41 -5.60 8.56 -74.06 -0.63 -6.23 16 36 H 0.08 0.19 7.82 -2.39 -0.02 0.17 16 37 H 0.38 -2.66 8.19 -74.06 -0.61 -3.26 16 38 H -0.29 -2.75 7.11 99.48 0.71 -2.04 16 39 H -0.28 -2.36 7.11 99.48 0.71 -1.66 16 40 H 0.14 0.59 4.71 -2.91 -0.01 0.58 16 41 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.09 -0.29 8.10 -2.39 -0.02 -0.31 16 Total: 0.00 -23.45 356.04 -0.13 -23.58 By element: Atomic # 1 Polarization: -23.79 SS G_CDS: -0.73 Total: -24.52 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 4.07 Total: 8.36 kcal Atomic # 7 Polarization: 2.13 SS G_CDS: -2.35 Total: -0.22 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -3.19 Total: -12.63 kcal Atomic # 14 Polarization: 3.36 SS G_CDS: 2.07 Total: 5.43 kcal Total: -23.45 -0.13 -23.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_13287732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.425 kcal (2) G-P(sol) polarization free energy of solvation -23.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds