Wall clock time and date at job start Sat Mar 6 2021 15:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 116.99867 * 2 1 4 4 O 1.20830 * 120.00323 * 359.72425 * 3 2 1 5 5 C 1.50706 * 120.00024 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.84306 * 310.92373 * 5 3 2 7 7 C 1.53774 * 113.61363 * 82.22530 * 5 3 2 8 8 C 1.53776 * 87.08297 * 139.98346 * 7 5 3 9 9 H 1.09007 * 113.61708 * 89.11220 * 8 7 5 10 10 N 1.46494 * 113.69559 * 220.00744 * 8 7 5 11 11 C 1.34781 * 120.00360 * 252.53495 * 10 8 7 12 12 O 1.21611 * 119.99938 * 359.97438 * 11 10 8 13 13 C 1.47378 * 119.99971 * 179.97438 * 11 10 8 14 14 C 1.36411 * 127.18630 * 179.70651 * 13 11 10 15 15 C 1.50699 * 125.80529 * 0.02562 * 14 13 11 16 16 O 1.33658 * 108.39551 * 179.89933 * 14 13 11 17 17 C 1.34211 * 110.90436 * 0.38715 * 16 14 13 18 18 C 1.50708 * 125.43690 * 179.76170 * 17 16 14 19 19 O 1.42897 * 109.47153 * 245.00489 * 18 17 16 20 20 Si 1.86297 * 109.46860 * 5.00299 * 18 17 16 21 21 C 1.34170 * 109.12829 * 359.76513 * 17 16 14 22 22 C 1.53779 * 113.61440 * 179.72523 * 5 3 2 23 23 H 1.09001 * 109.47271 * 60.00074 * 1 2 3 24 24 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46864 * 300.00062 * 1 2 3 26 26 H 1.09006 * 113.61632 * 254.53278 * 7 5 3 27 27 H 1.08998 * 113.61806 * 25.43216 * 7 5 3 28 28 H 0.96998 * 120.00123 * 72.53045 * 10 8 7 29 29 H 1.09007 * 109.47263 * 90.00241 * 15 14 13 30 30 H 1.09004 * 109.47288 * 209.99790 * 15 14 13 31 31 H 1.08998 * 109.47392 * 329.99520 * 15 14 13 32 32 H 1.08997 * 109.46804 * 124.99675 * 18 17 16 33 33 H 0.96700 * 114.00377 * 59.99472 * 19 18 17 34 34 H 1.48501 * 110.00168 * 179.97438 * 20 18 17 35 35 H 1.48505 * 110.00308 * 301.31574 * 20 18 17 36 36 H 1.07999 * 127.02815 * 179.97438 * 21 17 16 37 37 H 1.08997 * 113.61503 * 334.56521 * 22 5 3 38 38 H 1.09003 * 113.61665 * 105.47378 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 1 4.0237 0.6397 0.7581 7 6 4.1909 1.1170 -1.3969 8 6 5.1809 2.2222 -0.9928 9 1 6.0808 1.8458 -0.5063 10 7 5.4712 3.1743 -2.0676 11 6 6.6694 3.1497 -2.6844 12 8 7.5097 2.3373 -2.3482 13 6 6.9612 4.1072 -3.7660 14 6 8.1178 4.2159 -4.4811 15 6 9.3475 3.3630 -4.3038 16 8 7.9740 5.2057 -5.3678 17 6 6.7605 5.7693 -5.2637 18 6 6.2549 6.9160 -6.1009 19 8 6.0372 8.0553 -5.2663 20 14 7.5158 7.3346 -7.4067 21 6 6.0692 5.1490 -4.2954 22 6 4.1077 2.7142 -0.0073 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 4.6612 0.1469 -1.5578 27 1 3.5231 1.4046 -2.2090 28 1 4.8012 3.8224 -2.3356 29 1 9.2800 2.4889 -4.9515 30 1 10.2326 3.9424 -4.5666 31 1 9.4195 3.0409 -3.2650 32 1 5.3176 6.6312 -6.5789 33 1 6.8305 8.3646 -4.8080 34 1 7.0290 8.4636 -8.2395 35 1 8.8078 7.6938 -6.7687 36 1 5.0631 5.3701 -3.9709 37 1 3.4172 3.4384 -0.4394 38 1 4.5110 3.0335 0.9538 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_13308374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:35:28 Heat of formation + Delta-G solvation = -107.352578 kcal Electronic energy + Delta-G solvation = -23528.640690 eV Core-core repulsion = 19726.821764 eV Total energy + Delta-G solvation = -3801.818926 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.77651 -41.98760 -40.72129 -39.10428 -38.15809 -37.44704 -34.81134 -33.93036 -33.08079 -29.66108 -29.21258 -27.14866 -26.83935 -25.69835 -24.30492 -22.77387 -21.79562 -21.24897 -20.27010 -18.98828 -18.94123 -18.08580 -17.89797 -17.71466 -17.45337 -16.83313 -16.53574 -16.24931 -15.96334 -15.79021 -15.62029 -14.89368 -14.49113 -14.36342 -14.24366 -14.11326 -13.91177 -13.82321 -13.62683 -13.50983 -13.02155 -12.95059 -12.83867 -12.51175 -12.34933 -12.17724 -11.86532 -11.81585 -11.44069 -11.15334 -10.95445 -10.73425 -10.15147 -9.59483 -4.94501 0.22160 0.81216 1.04761 1.16596 1.41966 1.64762 1.71064 1.91361 2.20846 2.21815 3.16943 3.23085 3.31393 3.38398 3.64339 3.71520 3.74926 3.77756 4.01781 4.11661 4.25050 4.27395 4.37840 4.44530 4.51113 4.56433 4.61705 4.62137 4.66766 4.67780 4.79043 4.82459 4.91080 5.06306 5.15860 5.21997 5.31864 5.47138 5.88418 6.32709 6.44679 6.63441 7.12212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.538 6.538 5 C -0.104 4.104 6 H 0.154 0.846 7 C -0.128 4.128 8 C 0.127 3.873 9 H 0.121 0.879 10 N -0.704 5.704 11 C 0.592 3.408 12 O -0.569 6.569 13 C -0.270 4.270 14 C 0.088 3.912 15 C -0.085 4.085 16 O -0.173 6.173 17 C -0.058 4.058 18 C -0.034 4.034 19 O -0.535 6.535 20 Si 0.771 3.229 21 C -0.148 4.148 22 C -0.121 4.121 23 H 0.061 0.939 24 H 0.128 0.872 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.412 0.588 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.390 0.610 34 H -0.283 1.283 35 H -0.294 1.294 36 H 0.175 0.825 37 H 0.095 0.905 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 -2.155 -1.495 2.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.315 3.685 4 O -0.427 6.427 5 C -0.124 4.124 6 H 0.171 0.829 7 C -0.167 4.167 8 C 0.022 3.978 9 H 0.139 0.861 10 N -0.354 5.354 11 C 0.382 3.618 12 O -0.450 6.450 13 C -0.275 4.275 14 C 0.034 3.966 15 C -0.141 4.141 16 O -0.070 6.070 17 C -0.106 4.106 18 C -0.143 4.143 19 O -0.343 6.343 20 Si 0.675 3.325 21 C -0.167 4.167 22 C -0.159 4.159 23 H 0.079 0.921 24 H 0.146 0.854 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.248 0.752 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.174 0.826 33 H 0.240 0.760 34 H -0.210 1.210 35 H -0.220 1.220 36 H 0.192 0.808 37 H 0.113 0.887 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.054 -1.797 -2.003 2.691 hybrid contribution -0.764 0.995 1.150 1.702 sum -0.710 -0.801 -0.852 1.368 Atomic orbital electron populations 1.23528 0.75053 1.05597 1.02444 1.86522 1.24750 1.33166 1.83454 1.23999 0.92521 0.81004 0.70927 1.90668 1.67902 1.37389 1.46785 1.22432 0.85916 1.01531 1.02475 0.82878 1.23413 0.97595 1.01285 0.94411 1.22452 0.97792 0.89678 0.87905 0.86094 1.45675 1.15694 1.37189 1.36864 1.17348 0.81907 0.82029 0.80558 1.90754 1.47490 1.40284 1.66454 1.21218 0.97000 1.04358 1.04904 1.23259 0.97480 0.88353 0.87503 1.20724 0.90696 0.97363 1.05292 1.83686 1.33785 1.39976 1.49569 1.22810 0.83937 1.00931 1.02935 1.24529 1.10604 0.81816 0.97356 1.86641 1.39286 1.45078 1.63318 0.93525 0.73602 0.85754 0.79590 1.22795 1.01274 0.95187 0.97431 1.23341 0.96590 0.94735 1.01234 0.92050 0.85406 0.92004 0.88587 0.89419 0.75171 0.87895 0.88569 0.88377 0.82561 0.76002 1.20978 1.22027 0.80772 0.88667 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.90 10.57 -51.34 -0.54 -1.44 16 3 C 0.47 1.51 7.48 71.24 0.53 2.05 16 4 O -0.54 -4.93 15.65 21.95 0.34 -4.58 16 5 C -0.10 0.31 4.26 -11.01 -0.05 0.27 16 6 H 0.15 -1.12 8.14 -2.39 -0.02 -1.14 16 7 C -0.13 0.38 7.43 31.12 0.23 0.61 16 8 C 0.13 -0.26 4.24 45.52 0.19 -0.07 16 9 H 0.12 -0.07 7.46 -2.38 -0.02 -0.09 16 10 N -0.70 0.33 5.35 -443.34 -2.37 -2.04 16 11 C 0.59 2.92 7.81 86.65 0.68 3.59 16 12 O -0.57 -5.85 14.45 -4.07 -0.06 -5.91 16 13 C -0.27 -0.94 6.31 -18.99 -0.12 -1.05 16 14 C 0.09 0.26 7.37 25.26 0.19 0.45 16 15 C -0.08 0.04 9.89 71.24 0.70 0.75 16 16 O -0.17 -0.35 8.90 4.45 0.04 -0.31 16 17 C -0.06 0.00 6.18 24.76 0.15 0.15 16 18 C -0.03 0.10 2.97 71.24 0.21 0.31 16 19 O -0.53 0.27 12.88 -148.98 -1.92 -1.65 16 20 Si 0.77 -1.90 32.09 68.60 2.20 0.30 16 21 C -0.15 -0.01 10.48 23.65 0.25 0.24 16 22 C -0.12 0.40 7.16 31.12 0.22 0.62 16 23 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 24 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 25 H 0.06 -0.05 8.14 -2.38 -0.02 -0.07 16 26 H 0.10 -0.35 8.14 -2.38 -0.02 -0.37 16 27 H 0.09 -0.17 8.09 -2.39 -0.02 -0.19 16 28 H 0.41 -1.67 7.90 -92.71 -0.73 -2.40 16 29 H 0.10 -0.26 8.14 -2.38 -0.02 -0.28 16 30 H 0.10 -0.37 8.14 -2.38 -0.02 -0.39 16 31 H 0.10 0.25 6.49 -2.39 -0.02 0.23 16 32 H 0.16 -1.07 7.96 -2.39 -0.02 -1.09 16 33 H 0.39 -2.06 8.70 -74.06 -0.64 -2.70 16 34 H -0.28 -0.92 7.11 99.48 0.71 -0.22 16 35 H -0.29 -1.13 7.11 99.48 0.71 -0.42 16 36 H 0.17 -0.73 7.74 -2.91 -0.02 -0.75 16 37 H 0.09 -0.12 7.41 -2.39 -0.02 -0.14 16 38 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 Total: 0.00 -19.90 333.12 1.85 -18.05 By element: Atomic # 1 Polarization: -11.26 SS G_CDS: -0.23 Total: -11.49 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 4.39 Total: 9.08 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -2.37 Total: -2.04 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -2.14 Total: -13.90 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: 2.20 Total: 0.30 kcal Total: -19.90 1.85 -18.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_13308374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.305 kcal (2) G-P(sol) polarization free energy of solvation -19.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds