Wall clock time and date at job start Sat Mar 6 2021 15:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 117.00346 * 2 1 4 4 O 1.20828 * 119.99577 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00172 * 179.97438 * 3 2 1 6 6 H 1.09004 * 112.84479 * 48.80723 * 5 3 2 7 7 C 1.53778 * 113.61086 * 179.97438 * 5 3 2 8 8 C 1.53787 * 87.08035 * 140.06661 * 7 5 3 9 9 H 1.09004 * 113.61202 * 89.11582 * 8 7 5 10 10 N 1.46496 * 113.61566 * 220.01945 * 8 7 5 11 11 C 1.34776 * 120.00015 * 205.00016 * 10 8 7 12 12 O 1.21599 * 120.00075 * 359.97438 * 11 10 8 13 13 C 1.47558 * 120.00182 * 180.02562 * 11 10 8 14 14 C 1.39832 * 120.00151 * 359.72537 * 13 11 10 15 15 C 1.36556 * 119.99727 * 179.73821 * 14 13 11 16 16 C 1.39817 * 120.00544 * 0.53451 * 15 14 13 17 17 C 1.47560 * 120.00250 * 179.69312 * 16 15 14 18 18 C 1.34981 * 125.27857 * 0.02562 * 17 16 15 19 19 C 1.37799 * 114.70444 * 179.97438 * 18 17 16 20 20 C 1.33742 * 115.07755 * 359.97438 * 19 18 17 21 21 C 1.50696 * 125.11358 * 179.97438 * 20 19 18 22 22 O 1.42904 * 109.47720 * 300.00201 * 21 20 19 23 23 Si 1.86301 * 109.47001 * 180.02562 * 21 20 19 24 24 S 1.75861 * 109.76515 * 359.75853 * 20 19 18 25 25 C 1.39828 * 119.99801 * 359.71876 * 16 15 14 26 26 C 1.36559 * 119.99958 * 0.02562 * 25 16 15 27 27 C 1.53778 * 113.69101 * 277.53681 * 5 3 2 28 28 H 1.08998 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46670 * 299.99840 * 1 2 3 30 30 H 1.08996 * 109.47063 * 59.99778 * 1 2 3 31 31 H 1.08998 * 113.61879 * 25.52144 * 7 5 3 32 32 H 1.08997 * 113.69304 * 254.62230 * 7 5 3 33 33 H 0.96998 * 120.00377 * 24.99850 * 10 8 7 34 34 H 1.08004 * 119.99962 * 359.97438 * 14 13 11 35 35 H 1.08005 * 119.99989 * 180.25263 * 15 14 13 36 36 H 1.08005 * 122.64451 * 359.95631 * 18 17 16 37 37 H 1.07999 * 122.45553 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47387 * 60.00108 * 21 20 19 39 39 H 0.96701 * 113.99510 * 300.00506 * 22 21 20 40 40 H 1.48499 * 109.99997 * 180.02562 * 23 21 20 41 41 H 1.48500 * 110.00176 * 301.31941 * 23 21 20 42 42 H 1.08006 * 119.99689 * 179.97438 * 25 16 15 43 43 H 1.08005 * 119.99725 * 179.97438 * 26 25 16 44 44 H 1.08993 * 113.61229 * 105.46294 * 27 5 3 45 45 H 1.09000 * 113.61263 * 334.55944 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0239 0.6361 -0.7550 7 6 4.1078 2.7141 -0.0001 8 6 5.1821 2.2269 0.9865 9 1 6.0814 1.8482 0.5008 10 7 5.4722 3.1832 2.0577 11 6 6.6707 3.1619 2.6737 12 8 7.5112 2.3487 2.3406 13 6 6.9628 4.1248 3.7530 14 6 5.9981 5.0631 4.1329 15 6 6.2664 5.9506 5.1354 16 6 7.5098 5.9286 5.7744 17 6 7.8022 6.8921 6.8531 18 6 6.9510 7.8363 7.3069 19 6 7.4500 8.6206 8.3241 20 6 8.6977 8.3273 8.7061 21 6 9.4612 9.0387 9.7932 22 8 9.5923 10.4214 9.4569 23 14 11.1535 8.2784 9.9629 24 16 9.3108 6.9826 7.7530 25 6 8.4765 4.9938 5.3910 26 6 8.2063 4.1028 4.3921 27 6 4.1926 1.1230 1.3969 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.4178 3.4404 0.4294 32 1 4.5101 3.0303 -0.9625 33 1 4.8017 3.8317 2.3237 34 1 5.0393 5.0833 3.6360 35 1 5.5198 6.6727 5.4316 36 1 5.9574 7.9670 6.9042 37 1 6.8753 9.4133 8.7799 38 1 8.9236 8.9438 10.7366 39 1 10.0619 10.5814 8.6268 40 1 11.9164 8.9707 11.0324 41 1 11.0314 6.8330 10.2812 42 1 9.4371 4.9771 5.8844 43 1 8.9531 3.3811 4.0956 44 1 4.6631 0.1537 1.5613 45 1 3.5257 1.4140 2.2084 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_13308390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:35:30 Heat of formation + Delta-G solvation = -57.688728 kcal Electronic energy + Delta-G solvation = -29297.159760 eV Core-core repulsion = 24953.122919 eV Total energy + Delta-G solvation = -4344.036842 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.107 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.03919 -41.31006 -40.13583 -39.28945 -38.79130 -37.44444 -37.35056 -34.86461 -33.36636 -32.22785 -30.52621 -29.36534 -27.57993 -26.83282 -26.56792 -24.72759 -23.96575 -23.46925 -22.47577 -21.66688 -20.77073 -20.24779 -19.18833 -18.90689 -18.56438 -18.02698 -17.58771 -17.43847 -16.91483 -16.57901 -16.33270 -16.22034 -16.13346 -15.96219 -15.78807 -15.48106 -15.00203 -14.63340 -14.52407 -14.42391 -14.33505 -14.17195 -13.89646 -13.66055 -13.61090 -13.54885 -13.26671 -13.10818 -13.00531 -12.59880 -12.52718 -12.33178 -12.28178 -12.06331 -11.85560 -11.81555 -11.57468 -11.43571 -11.09984 -10.81443 -10.53595 -10.18865 -10.16392 -9.55260 -9.03366 -5.16060 -0.89307 0.24949 0.34271 0.38137 0.75922 1.05530 1.21848 1.51994 1.58473 1.64754 1.84913 1.95030 2.13642 2.82319 3.23573 3.31703 3.39836 3.45019 3.64412 3.67647 3.71428 3.75047 3.76779 3.84923 4.02639 4.20249 4.25681 4.28371 4.31497 4.36654 4.46466 4.48743 4.55135 4.58201 4.62662 4.63792 4.68537 4.82753 4.92481 4.92672 5.01059 5.05045 5.11353 5.22480 5.28917 5.32204 5.32882 5.45229 5.47969 5.73565 6.42004 6.64304 6.66137 7.09181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.105 4.105 6 H 0.151 0.849 7 C -0.118 4.118 8 C 0.124 3.876 9 H 0.118 0.882 10 N -0.703 5.703 11 C 0.560 3.440 12 O -0.575 6.575 13 C -0.151 4.151 14 C -0.069 4.069 15 C -0.110 4.110 16 C 0.006 3.994 17 C -0.160 4.160 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.222 4.222 21 C -0.025 4.025 22 O -0.547 6.547 23 Si 0.718 3.282 24 S 0.125 5.875 25 C -0.128 4.128 26 C -0.062 4.062 27 C -0.130 4.130 28 H 0.127 0.873 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.415 0.585 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.153 0.847 38 H 0.122 0.878 39 H 0.397 0.603 40 H -0.269 1.269 41 H -0.268 1.268 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.092 0.908 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 1.163 -1.537 2.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.125 4.125 6 H 0.169 0.831 7 C -0.156 4.156 8 C 0.019 3.981 9 H 0.136 0.864 10 N -0.354 5.354 11 C 0.350 3.650 12 O -0.456 6.456 13 C -0.155 4.155 14 C -0.088 4.088 15 C -0.130 4.130 16 C 0.004 3.996 17 C -0.276 4.276 18 C -0.148 4.148 19 C -0.140 4.140 20 C -0.339 4.339 21 C -0.139 4.139 22 O -0.355 6.355 23 Si 0.621 3.379 24 S 0.392 5.608 25 C -0.147 4.147 26 C -0.081 4.081 27 C -0.169 4.169 28 H 0.145 0.855 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.253 0.747 34 H 0.177 0.823 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.171 0.829 38 H 0.139 0.861 39 H 0.247 0.753 40 H -0.194 1.194 41 H -0.194 1.194 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.111 0.889 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.261 -0.259 -0.704 0.794 hybrid contribution -2.348 0.940 0.402 2.561 sum -2.610 0.681 -0.301 2.714 Atomic orbital electron populations 1.23526 0.75030 1.05574 1.02490 1.86525 1.24778 1.33269 1.83473 1.23974 0.92473 0.81004 0.70970 1.90665 1.67849 1.37296 1.46711 1.22426 0.85963 1.01716 1.02366 0.83105 1.23337 0.96424 0.94657 1.01228 1.22467 0.97777 0.89738 0.88132 0.86417 1.45777 1.15703 1.36975 1.36972 1.18460 0.81891 0.83046 0.81651 1.90785 1.47881 1.40685 1.66244 1.20030 0.96726 0.99303 0.99407 1.21247 0.98986 0.92638 0.95878 1.21179 0.96015 0.99939 0.95843 1.18461 0.94723 0.93203 0.93178 1.23174 0.98941 1.02733 1.02792 1.20633 1.01707 0.94872 0.97567 1.20177 0.94597 1.01267 0.98005 1.25169 1.00232 1.03150 1.05365 1.24415 1.07707 0.85530 0.96220 1.86492 1.81072 1.21153 1.46776 0.94177 0.77127 0.77662 0.88924 1.84171 1.15767 1.31132 1.29723 1.21046 0.99759 0.95673 0.98225 1.20961 0.95945 0.97357 0.93810 1.23435 0.97635 1.01209 0.94582 0.85505 0.91978 0.91955 0.88191 0.88157 0.74698 0.82292 0.82417 0.81734 0.82923 0.86052 0.75320 1.19406 1.19355 0.84717 0.85019 0.88918 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.74 10.57 -51.44 -0.54 -1.28 16 3 C 0.47 1.11 7.49 71.24 0.53 1.65 16 4 O -0.54 -4.21 15.65 21.96 0.34 -3.87 16 5 C -0.11 0.39 4.25 -11.02 -0.05 0.34 16 6 H 0.15 -1.13 8.14 -2.38 -0.02 -1.15 16 7 C -0.12 0.56 7.16 31.12 0.22 0.78 16 8 C 0.12 -0.35 4.24 45.53 0.19 -0.16 16 9 H 0.12 -0.07 7.47 -2.39 -0.02 -0.08 16 10 N -0.70 1.65 5.30 -443.09 -2.35 -0.70 16 11 C 0.56 2.31 7.76 86.70 0.67 2.98 16 12 O -0.58 -6.97 15.93 -4.03 -0.06 -7.03 16 13 C -0.15 -0.24 5.88 -20.05 -0.12 -0.36 16 14 C -0.07 0.27 9.48 22.26 0.21 0.48 16 15 C -0.11 0.40 9.48 22.26 0.21 0.61 16 16 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 17 C -0.16 0.01 6.37 23.98 0.15 0.16 16 18 C -0.12 0.24 9.64 21.42 0.21 0.45 16 19 C -0.11 0.13 10.00 21.14 0.21 0.34 16 20 C -0.22 0.16 5.73 24.66 0.14 0.30 16 21 C -0.03 0.03 2.96 71.23 0.21 0.25 16 22 O -0.55 0.60 12.86 -148.98 -1.92 -1.31 16 23 Si 0.72 -1.08 30.96 68.60 2.12 1.05 16 24 S 0.12 -0.04 19.46 -56.49 -1.10 -1.14 16 25 C -0.13 -0.18 9.54 22.26 0.21 0.03 16 26 C -0.06 -0.20 9.53 22.26 0.21 0.01 16 27 C -0.13 0.46 7.43 31.13 0.23 0.69 16 28 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 29 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 30 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 31 H 0.10 -0.36 7.41 -2.39 -0.02 -0.38 16 32 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.41 -3.18 6.74 -92.71 -0.62 -3.81 16 34 H 0.16 -1.69 6.38 -2.91 -0.02 -1.70 16 35 H 0.16 -1.38 6.74 -2.91 -0.02 -1.40 16 36 H 0.17 -1.13 6.88 -2.91 -0.02 -1.15 16 37 H 0.15 -0.44 8.06 -2.91 -0.02 -0.46 16 38 H 0.12 -0.13 7.96 -2.39 -0.02 -0.15 16 39 H 0.40 -3.43 8.70 -74.06 -0.64 -4.08 16 40 H -0.27 -1.18 7.11 99.48 0.71 -0.48 16 41 H -0.27 -0.90 7.11 99.48 0.71 -0.19 16 42 H 0.14 -0.07 7.26 -2.91 -0.02 -0.09 16 43 H 0.13 0.58 7.64 -2.91 -0.02 0.56 16 44 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.09 -0.29 8.10 -2.39 -0.02 -0.31 16 Total: 0.00 -22.58 396.48 0.86 -21.72 By element: Atomic # 1 Polarization: -16.85 SS G_CDS: -0.17 Total: -17.02 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 4.54 Total: 9.58 kcal Atomic # 7 Polarization: 1.65 SS G_CDS: -2.35 Total: -0.70 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -2.18 Total: -13.49 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: 2.12 Total: 1.05 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.10 Total: -1.14 kcal Total: -22.58 0.86 -21.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_13308390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.967 kcal (2) G-P(sol) polarization free energy of solvation -22.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds