Wall clock time and date at job start Sat Mar 6 2021 15:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 117.00291 * 2 1 4 4 O 1.20825 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00275 * 180.02562 * 3 2 1 6 6 H 1.09003 * 112.90393 * 311.24768 * 5 3 2 7 7 C 1.53954 * 113.66945 * 82.43602 * 5 3 2 8 8 C 1.53781 * 87.01947 * 139.93656 * 7 5 3 9 9 H 1.08998 * 113.61382 * 89.22624 * 8 7 5 10 10 N 1.46494 * 113.61338 * 220.05029 * 8 7 5 11 11 C 1.34784 * 119.99863 * 254.13278 * 10 8 7 12 12 O 1.21585 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.47538 * 119.99579 * 180.02562 * 11 10 8 14 14 C 1.40143 * 120.18566 * 180.27666 * 13 11 10 15 15 O 1.35657 * 120.15367 * 0.02562 * 14 13 11 16 16 C 1.38708 * 119.69903 * 180.29237 * 14 13 11 17 17 C 1.38056 * 120.08200 * 359.42763 * 16 14 13 18 18 C 1.50701 * 119.80548 * 180.25436 * 17 16 14 19 19 O 1.42896 * 109.47079 * 65.00495 * 18 17 16 20 20 Si 1.86298 * 109.47020 * 185.00250 * 18 17 16 21 21 C 1.38555 * 120.39120 * 0.27853 * 17 16 14 22 22 C 1.37790 * 120.29638 * 0.02562 * 21 17 16 23 23 C 1.53779 * 113.61879 * 180.02562 * 5 3 2 24 24 H 1.09000 * 109.47549 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47042 * 299.99857 * 1 2 3 26 26 H 1.09001 * 109.47486 * 60.00144 * 1 2 3 27 27 H 1.08995 * 113.61287 * 25.41690 * 7 5 3 28 28 H 1.08999 * 113.66475 * 254.46120 * 7 5 3 29 29 H 0.96997 * 120.00228 * 74.13168 * 10 8 7 30 30 H 0.96701 * 113.99398 * 270.27108 * 15 14 13 31 31 H 1.08002 * 119.96289 * 179.71080 * 16 14 13 32 32 H 1.08994 * 109.46963 * 305.00251 * 18 17 16 33 33 H 0.96701 * 113.99798 * 180.02562 * 19 18 17 34 34 H 1.48502 * 109.99888 * 178.67847 * 20 18 17 35 35 H 1.48500 * 110.00324 * 299.99870 * 20 18 17 36 36 H 1.07997 * 119.85142 * 179.97438 * 21 17 16 37 37 H 1.08002 * 120.04333 * 179.97438 * 22 21 17 38 38 H 1.08999 * 113.61978 * 105.45875 * 23 5 3 39 39 H 1.09007 * 113.61066 * 334.56373 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0249 0.6357 0.7540 7 6 4.1927 1.1221 -1.3986 8 6 5.1808 2.2268 -0.9886 9 1 6.0812 1.8494 -0.5041 10 7 5.4695 3.1832 -2.0600 11 6 6.6557 3.1420 -2.6986 12 8 7.4861 2.3108 -2.3856 13 6 6.9466 4.1055 -3.7773 14 6 8.1765 4.0626 -4.4477 15 8 9.1056 3.1342 -4.1083 16 6 8.4418 4.9772 -5.4562 17 6 7.4929 5.9174 -5.8048 18 6 7.7854 6.9045 -6.9054 19 8 7.9250 6.2080 -8.1452 20 14 6.3840 8.1253 -7.0333 21 6 6.2734 5.9592 -5.1485 22 6 5.9956 5.0623 -4.1401 23 6 4.1079 2.7141 0.0001 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.5254 1.4123 -2.2101 28 1 4.6646 0.1534 -1.5632 29 1 4.8069 3.8460 -2.3100 30 1 9.7147 3.4226 -3.4148 31 1 9.3900 4.9510 -5.9725 32 1 8.7104 7.4355 -6.6807 33 1 8.1152 6.7822 -8.8997 34 1 6.6750 9.1233 -8.0937 35 1 5.1169 7.4139 -7.3393 36 1 5.5375 6.6987 -5.4281 37 1 5.0438 5.0988 -3.6310 38 1 4.5112 3.0285 0.9627 39 1 3.4172 3.4406 -0.4281 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_13422076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:35:33 Heat of formation + Delta-G solvation = -133.033000 kcal Electronic energy + Delta-G solvation = -24767.345421 eV Core-core repulsion = 20836.186768 eV Total energy + Delta-G solvation = -3931.158653 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.05319 -41.51674 -40.25212 -39.02093 -38.34213 -37.42284 -37.29600 -34.73387 -32.72521 -31.10861 -29.41668 -27.82944 -26.82922 -26.52522 -23.86929 -23.66584 -22.38119 -21.57181 -20.78622 -19.28401 -18.94597 -18.66886 -18.53366 -18.03383 -17.47249 -17.32819 -16.78940 -16.39620 -16.16647 -16.13358 -15.74971 -15.56125 -15.27105 -14.72867 -14.42906 -14.22993 -14.06405 -13.97858 -13.65095 -13.53663 -13.33409 -13.06244 -12.99961 -12.52182 -12.42442 -12.34486 -12.11903 -11.85538 -11.79902 -11.63194 -11.43043 -10.89215 -10.57443 -10.22911 -10.00148 -9.77925 -4.91787 -0.41964 0.15271 1.05620 1.26784 1.61708 1.65081 1.68775 1.96235 2.13716 2.54981 3.09128 3.24790 3.30162 3.34273 3.58560 3.65795 3.73245 3.76532 3.80022 4.02259 4.10776 4.25231 4.27198 4.28134 4.32371 4.49587 4.57444 4.62729 4.63668 4.68054 4.76654 4.83534 4.93429 5.01587 5.05468 5.15093 5.26406 5.32980 5.47342 5.59351 6.44863 6.54938 6.64441 6.73904 7.14152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.471 3.529 4 O -0.535 6.535 5 C -0.105 4.105 6 H 0.151 0.849 7 C -0.133 4.133 8 C 0.127 3.873 9 H 0.118 0.882 10 N -0.705 5.705 11 C 0.560 3.440 12 O -0.558 6.558 13 C -0.181 4.181 14 C 0.155 3.845 15 O -0.497 6.497 16 C -0.140 4.140 17 C -0.035 4.035 18 C -0.096 4.096 19 O -0.559 6.559 20 Si 0.776 3.224 21 C -0.136 4.136 22 C -0.054 4.054 23 C -0.116 4.116 24 H 0.126 0.874 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.414 0.586 30 H 0.409 0.591 31 H 0.137 0.863 32 H 0.101 0.899 33 H 0.397 0.603 34 H -0.289 1.289 35 H -0.292 1.292 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.103 0.897 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 5.088 2.128 5.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.125 4.125 6 H 0.169 0.831 7 C -0.172 4.172 8 C 0.022 3.978 9 H 0.136 0.864 10 N -0.357 5.357 11 C 0.348 3.652 12 O -0.437 6.437 13 C -0.185 4.185 14 C 0.109 3.891 15 O -0.310 6.310 16 C -0.159 4.159 17 C -0.036 4.036 18 C -0.204 4.204 19 O -0.370 6.370 20 Si 0.680 3.320 21 C -0.153 4.153 22 C -0.072 4.072 23 C -0.154 4.154 24 H 0.144 0.856 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.252 0.748 30 H 0.269 0.731 31 H 0.155 0.845 32 H 0.119 0.881 33 H 0.248 0.752 34 H -0.216 1.216 35 H -0.219 1.219 36 H 0.174 0.826 37 H 0.184 0.816 38 H 0.121 0.879 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.212 4.264 1.830 5.141 hybrid contribution 0.329 0.034 -1.044 1.096 sum -1.883 4.298 0.785 4.758 Atomic orbital electron populations 1.23521 0.75048 1.05545 1.02496 1.86524 1.24770 1.33313 1.83476 1.23974 0.92481 0.80997 0.70966 1.90661 1.67844 1.37266 1.46711 1.22464 0.85939 1.01888 1.02187 0.83093 1.23470 0.97798 1.01260 0.94632 1.22433 0.97735 0.89617 0.88054 0.86443 1.45774 1.16925 1.36281 1.36724 1.18264 0.82063 0.83308 0.81531 1.90804 1.47804 1.38837 1.66305 1.20453 0.97402 1.00368 1.00247 1.18714 0.89001 0.87855 0.93565 1.84725 1.45661 1.39837 1.60753 1.21366 1.01592 0.94633 0.98307 1.19606 0.93639 0.95413 0.94921 1.25204 1.11739 0.99520 0.83953 1.86555 1.93969 1.38428 1.18021 0.94064 0.73967 0.75952 0.88006 1.21215 0.96248 1.00551 0.97293 1.21455 0.98667 0.91613 0.95509 1.23329 0.96327 0.94508 1.01209 0.85560 0.91871 0.92036 0.89351 0.89220 0.74794 0.73123 0.84508 0.88119 0.75175 1.21593 1.21927 0.82562 0.81561 0.87892 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.96 10.56 -51.37 -0.54 -1.50 16 3 C 0.47 1.36 7.49 71.24 0.53 1.89 16 4 O -0.54 -4.40 15.65 21.97 0.34 -4.05 16 5 C -0.11 0.34 4.26 -10.96 -0.05 0.29 16 6 H 0.15 -1.07 8.14 -2.39 -0.02 -1.09 16 7 C -0.13 0.31 7.44 31.18 0.23 0.54 16 8 C 0.13 -0.30 4.21 45.53 0.19 -0.11 16 9 H 0.12 -0.04 7.50 -2.39 -0.02 -0.06 16 10 N -0.70 1.23 5.31 -443.14 -2.35 -1.12 16 11 C 0.56 2.89 7.76 86.69 0.67 3.57 16 12 O -0.56 -7.15 14.78 16.94 0.25 -6.90 16 13 C -0.18 -0.57 5.89 -20.01 -0.12 -0.69 16 14 C 0.15 0.89 6.72 22.84 0.15 1.05 16 15 O -0.50 -3.91 11.58 -68.81 -0.80 -4.70 16 16 C -0.14 -0.48 9.60 22.34 0.21 -0.26 16 17 C -0.04 -0.01 5.39 -19.83 -0.11 -0.12 16 18 C -0.10 0.27 2.78 71.24 0.20 0.46 16 19 O -0.56 -0.61 12.81 -148.98 -1.91 -2.52 16 20 Si 0.78 -3.92 29.83 68.60 2.05 -1.87 16 21 C -0.14 0.38 8.64 22.24 0.19 0.57 16 22 C -0.05 0.17 9.53 22.52 0.21 0.38 16 23 C -0.12 0.54 7.16 31.13 0.22 0.77 16 24 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 25 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 26 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 27 H 0.09 -0.14 8.10 -2.39 -0.02 -0.16 16 28 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.41 -2.99 6.74 -92.71 -0.63 -3.62 16 30 H 0.41 0.03 9.06 -74.06 -0.67 -0.64 16 31 H 0.14 0.38 8.06 -2.91 -0.02 0.36 16 32 H 0.10 -0.69 7.96 -2.39 -0.02 -0.71 16 33 H 0.40 -2.80 8.74 -74.06 -0.65 -3.44 16 34 H -0.29 0.06 7.11 99.48 0.71 0.77 16 35 H -0.29 -0.42 7.04 99.48 0.70 0.28 16 36 H 0.16 -1.16 4.83 -2.91 -0.01 -1.17 16 37 H 0.17 -1.73 6.40 -2.91 -0.02 -1.75 16 38 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H 0.10 -0.37 7.41 -2.38 -0.02 -0.39 16 Total: 0.00 -26.71 335.75 0.01 -26.70 By element: Atomic # 1 Polarization: -12.74 SS G_CDS: -0.78 Total: -13.52 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 3.75 Total: 9.49 kcal Atomic # 7 Polarization: 1.23 SS G_CDS: -2.35 Total: -1.12 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -2.65 Total: -19.68 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: 2.05 Total: -1.87 kcal Total: -26.71 0.01 -26.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_13422076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.334 kcal (2) G-P(sol) polarization free energy of solvation -26.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds