Wall clock time and date at job start Sat Mar 6 2021 15:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34222 * 116.99862 * 2 1 4 4 O 1.20830 * 120.00447 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99856 * 179.97438 * 3 2 1 6 6 H 1.08999 * 112.84851 * 311.19816 * 5 3 2 7 7 C 1.53781 * 113.61320 * 82.50219 * 5 3 2 8 8 C 1.53786 * 87.07924 * 139.98068 * 7 5 3 9 9 H 1.09005 * 113.68847 * 89.12750 * 8 7 5 10 10 N 1.46498 * 113.61702 * 220.01549 * 8 7 5 11 11 C 1.34768 * 120.00297 * 252.50143 * 10 8 7 12 12 O 1.21586 * 120.00323 * 0.02562 * 11 10 8 13 13 C 1.47538 * 119.99927 * 179.97438 * 11 10 8 14 14 C 1.40139 * 120.19043 * 180.25573 * 13 11 10 15 15 O 1.35650 * 120.15564 * 0.02562 * 14 13 11 16 16 C 1.38716 * 119.69630 * 180.27785 * 14 13 11 17 17 C 1.50702 * 119.95512 * 179.72151 * 16 14 13 18 18 O 1.42903 * 109.47022 * 285.01986 * 17 16 14 19 19 Si 1.86300 * 109.47076 * 165.02131 * 17 16 14 20 20 C 1.38051 * 120.08681 * 359.74230 * 16 14 13 21 21 C 1.38548 * 120.38806 * 359.97438 * 20 16 14 22 22 C 1.50703 * 119.85025 * 179.97438 * 21 20 16 23 23 C 1.37790 * 120.30332 * 359.97438 * 21 20 16 24 24 C 1.53780 * 113.61494 * 180.02562 * 5 3 2 25 25 H 1.09000 * 109.47174 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47339 * 300.00060 * 1 2 3 27 27 H 1.09002 * 109.46940 * 59.99620 * 1 2 3 28 28 H 1.09004 * 113.61412 * 25.43884 * 7 5 3 29 29 H 1.08999 * 113.61603 * 254.53101 * 7 5 3 30 30 H 0.97006 * 119.99442 * 72.50048 * 10 8 7 31 31 H 0.96699 * 114.00170 * 270.26367 * 15 14 13 32 32 H 1.08993 * 109.47300 * 45.02055 * 17 16 14 33 33 H 0.96697 * 113.99833 * 179.97438 * 18 17 16 34 34 H 1.48507 * 109.99915 * 59.99853 * 19 17 16 35 35 H 1.48501 * 110.00257 * 181.31676 * 19 17 16 36 36 H 1.07999 * 119.80984 * 180.02562 * 20 16 14 37 37 H 1.09000 * 109.47205 * 269.98161 * 22 21 20 38 38 H 1.09001 * 109.47112 * 29.98063 * 22 21 20 39 39 H 1.08996 * 109.47240 * 149.97924 * 22 21 20 40 40 H 1.08002 * 120.04466 * 180.02562 * 23 21 20 41 41 H 1.09002 * 113.61535 * 105.47398 * 24 5 3 42 42 H 1.09000 * 113.69062 * 334.57500 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0233 0.6364 0.7567 7 6 4.1916 1.1232 -1.3961 8 6 5.1814 2.2266 -0.9865 9 1 6.0816 1.8493 -0.5013 10 7 5.4710 3.1826 -2.0582 11 6 6.6691 3.1612 -2.6748 12 8 7.5097 2.3481 -2.3421 13 6 6.9605 4.1236 -3.7544 14 6 8.2031 4.1014 -4.4020 15 8 9.1442 3.1942 -4.0396 16 6 8.4682 5.0148 -5.4117 17 6 9.8048 5.0002 -6.1077 18 8 10.7960 5.5653 -5.2474 19 14 9.6995 6.0011 -7.6755 20 6 7.5094 5.9374 -5.7796 21 6 6.2776 5.9587 -5.1458 22 6 5.2401 6.9715 -5.5567 23 6 5.9968 5.0581 -4.1415 24 6 4.1078 2.7141 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.5243 1.4144 -2.2073 29 1 4.6621 0.1538 -1.5610 30 1 4.8002 3.8311 -2.3239 31 1 9.7346 3.4992 -3.3371 32 1 10.0770 3.9730 -6.3501 33 1 11.6833 5.5879 -5.6312 34 1 9.3290 7.4039 -7.3585 35 1 11.0024 5.9684 -8.3874 36 1 7.7205 6.6462 -6.5667 37 1 5.3589 7.8760 -4.9601 38 1 5.3662 7.2132 -6.6121 39 1 4.2446 6.5580 -5.3952 40 1 5.0350 5.0782 -3.6505 41 1 4.5105 3.0288 0.9639 42 1 3.4184 3.4416 -0.4275 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_13422088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:35:36 Heat of formation + Delta-G solvation = -136.935359 kcal Electronic energy + Delta-G solvation = -27007.717335 eV Core-core repulsion = 22920.851844 eV Total energy + Delta-G solvation = -4086.865491 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.08257 -41.60594 -40.35212 -39.01197 -38.05248 -37.72021 -37.41722 -34.77720 -33.18290 -32.65022 -29.38523 -27.57740 -27.10272 -26.84127 -26.73194 -24.97392 -22.51435 -21.84327 -21.54305 -20.65682 -19.52054 -18.96374 -18.62460 -18.25331 -18.03872 -17.50549 -17.35930 -16.81305 -16.41424 -16.16662 -15.99144 -15.82444 -15.37384 -15.14692 -14.88820 -14.47673 -14.40126 -14.26987 -14.09187 -13.78010 -13.64085 -13.52841 -13.17767 -13.02172 -12.96822 -12.55551 -12.52906 -12.45090 -12.34679 -11.86854 -11.85439 -11.81758 -11.72894 -11.43543 -10.92244 -10.48796 -10.27699 -10.02651 -9.51178 -4.95551 -0.36008 0.05581 1.05142 1.24187 1.55892 1.64183 1.68108 1.87968 2.12649 2.50859 3.16950 3.22546 3.27992 3.30993 3.54356 3.64453 3.68007 3.74654 3.81821 4.00998 4.10537 4.15113 4.25673 4.28379 4.31349 4.48724 4.54165 4.56728 4.60620 4.62208 4.68524 4.80149 4.83185 4.87727 4.91269 4.96506 5.05694 5.18397 5.22543 5.32394 5.41166 5.45260 5.65878 6.42204 6.52604 6.64053 6.67770 7.11956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.105 4.105 6 H 0.151 0.849 7 C -0.130 4.130 8 C 0.125 3.875 9 H 0.116 0.884 10 N -0.705 5.705 11 C 0.560 3.440 12 O -0.559 6.559 13 C -0.180 4.180 14 C 0.163 3.837 15 O -0.489 6.489 16 C -0.117 4.117 17 C -0.087 4.087 18 O -0.556 6.556 19 Si 0.773 3.227 20 C -0.080 4.080 21 C -0.095 4.095 22 C -0.118 4.118 23 C -0.062 4.062 24 C -0.118 4.118 25 H 0.127 0.873 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.413 0.587 31 H 0.402 0.598 32 H 0.080 0.920 33 H 0.395 0.605 34 H -0.280 1.280 35 H -0.286 1.286 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.160 0.840 41 H 0.099 0.901 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 1.633 -2.455 4.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.124 4.124 6 H 0.169 0.831 7 C -0.168 4.168 8 C 0.020 3.980 9 H 0.134 0.866 10 N -0.357 5.357 11 C 0.348 3.652 12 O -0.438 6.438 13 C -0.184 4.184 14 C 0.117 3.883 15 O -0.301 6.301 16 C -0.118 4.118 17 C -0.194 4.194 18 O -0.366 6.366 19 Si 0.676 3.324 20 C -0.098 4.098 21 C -0.095 4.095 22 C -0.174 4.174 23 C -0.080 4.080 24 C -0.156 4.156 25 H 0.145 0.855 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.251 0.749 31 H 0.261 0.739 32 H 0.098 0.902 33 H 0.245 0.755 34 H -0.206 1.206 35 H -0.213 1.213 36 H 0.167 0.833 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.177 0.823 41 H 0.118 0.882 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.911 1.706 -2.670 5.033 hybrid contribution 1.009 0.363 0.994 1.462 sum -2.902 2.069 -1.676 3.938 Atomic orbital electron populations 1.23530 0.75002 1.05582 1.02506 1.86525 1.24802 1.33224 1.83458 1.23945 0.92423 0.81021 0.70968 1.90663 1.67839 1.37288 1.46725 1.22420 0.86042 1.01657 1.02297 0.83126 1.23425 0.97642 1.01168 0.94607 1.22443 0.97715 0.89744 0.88086 0.86594 1.45764 1.15661 1.37141 1.37105 1.18261 0.82180 0.83114 0.81598 1.90801 1.47548 1.39818 1.65592 1.20408 0.96967 1.00736 1.00254 1.18501 0.88524 0.88243 0.93066 1.84635 1.45805 1.40294 1.59401 1.19738 0.96121 0.96559 0.99373 1.25007 0.87080 1.04604 1.02749 1.86499 1.21582 1.84358 1.44160 0.93920 0.84385 0.77815 0.76232 1.21359 0.92738 0.96349 0.99351 1.20102 0.95618 0.97870 0.95917 1.20923 0.96696 0.96793 1.02983 1.21424 0.98659 0.92205 0.95741 1.23341 0.96425 0.94688 1.01151 0.85495 0.91951 0.91947 0.89086 0.89031 0.74895 0.73938 0.90206 0.75450 1.20649 1.21289 0.83331 0.90165 0.89931 0.89553 0.82294 0.88211 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.90 10.57 -51.34 -0.54 -1.44 16 3 C 0.47 1.38 7.48 71.24 0.53 1.92 16 4 O -0.54 -4.47 15.65 21.95 0.34 -4.13 16 5 C -0.10 0.30 4.26 -11.01 -0.05 0.25 16 6 H 0.15 -1.00 8.14 -2.39 -0.02 -1.02 16 7 C -0.13 0.31 7.43 31.12 0.23 0.54 16 8 C 0.13 -0.19 4.24 45.53 0.19 0.00 16 9 H 0.12 0.11 7.46 -2.38 -0.02 0.09 16 10 N -0.70 0.43 5.31 -443.14 -2.35 -1.92 16 11 C 0.56 3.65 7.76 86.70 0.67 4.32 16 12 O -0.56 -7.89 14.76 16.93 0.25 -7.64 16 13 C -0.18 -0.83 5.89 -20.01 -0.12 -0.95 16 14 C 0.16 1.20 6.69 22.85 0.15 1.35 16 15 O -0.49 -4.78 10.91 -68.73 -0.75 -5.53 16 16 C -0.12 -0.47 5.30 -19.79 -0.10 -0.57 16 17 C -0.09 -0.14 2.37 71.24 0.17 0.02 16 18 O -0.56 -1.70 12.86 -148.98 -1.92 -3.62 16 19 Si 0.77 -1.72 30.19 68.60 2.07 0.35 16 20 C -0.08 -0.01 8.30 22.30 0.19 0.18 16 21 C -0.09 0.22 5.87 -19.90 -0.12 0.10 16 22 C -0.12 0.90 10.00 71.24 0.71 1.61 16 23 C -0.06 0.11 9.18 22.52 0.21 0.31 16 24 C -0.12 0.44 7.16 31.13 0.22 0.66 16 25 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 27 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 28 H 0.09 -0.19 8.09 -2.38 -0.02 -0.21 16 29 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.41 -2.44 6.76 -92.70 -0.63 -3.07 16 31 H 0.40 2.23 9.06 -74.06 -0.67 1.55 16 32 H 0.08 0.12 7.83 -2.39 -0.02 0.10 16 33 H 0.40 -1.82 8.74 -74.06 -0.65 -2.47 16 34 H -0.28 -0.58 6.75 99.48 0.67 0.09 16 35 H -0.29 -0.62 7.11 99.48 0.71 0.08 16 36 H 0.15 -0.48 4.87 -2.91 -0.01 -0.49 16 37 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.08 -0.75 8.08 -2.39 -0.02 -0.77 16 39 H 0.09 -0.87 8.08 -2.39 -0.02 -0.88 16 40 H 0.16 -1.33 6.40 -2.91 -0.02 -1.35 16 41 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.10 -0.27 7.42 -2.39 -0.02 -0.29 16 Total: 0.00 -24.51 356.36 0.35 -24.16 By element: Atomic # 1 Polarization: -10.29 SS G_CDS: -0.85 Total: -11.14 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 4.09 Total: 10.90 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -2.35 Total: -1.92 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -2.61 Total: -22.35 kcal Atomic # 14 Polarization: -1.72 SS G_CDS: 2.07 Total: 0.35 kcal Total: -24.51 0.35 -24.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_13422088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.771 kcal (2) G-P(sol) polarization free energy of solvation -24.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds