Wall clock time and date at job start Sat Mar 6 2021 15:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99330 * 2 1 4 4 O 1.20823 * 120.00389 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99567 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.90791 * 311.25185 * 5 3 2 7 7 C 1.53779 * 113.61429 * 82.50513 * 5 3 2 8 8 C 1.53779 * 87.08402 * 139.98140 * 7 5 3 9 9 H 1.08998 * 113.69354 * 89.12517 * 8 7 5 10 10 N 1.46501 * 113.61719 * 220.02087 * 8 7 5 11 11 C 1.34772 * 120.00042 * 252.49461 * 10 8 7 12 12 O 1.21691 * 119.99956 * 0.02562 * 11 10 8 13 13 C 1.46675 * 120.00161 * 179.97438 * 11 10 8 14 14 C 1.37868 * 126.23669 * 179.97438 * 13 11 10 15 15 C 1.50706 * 126.45667 * 359.93510 * 14 13 11 16 16 C 1.39838 * 107.08745 * 179.97438 * 14 13 11 17 17 C 1.35451 * 107.86290 * 0.02562 * 16 14 13 18 18 C 1.50696 * 125.56196 * 180.02562 * 17 16 14 19 19 O 1.42897 * 109.47637 * 244.97952 * 18 17 16 20 20 Si 1.86308 * 109.47387 * 4.97656 * 18 17 16 21 21 N 1.35530 * 108.87235 * 359.76948 * 17 16 14 22 22 C 1.53784 * 113.61308 * 180.02562 * 5 3 2 23 23 H 1.08995 * 109.47577 * 299.99697 * 1 2 3 24 24 H 1.08999 * 109.47611 * 59.99846 * 1 2 3 25 25 H 1.09008 * 109.47278 * 179.97438 * 1 2 3 26 26 H 1.09006 * 113.61307 * 25.43343 * 7 5 3 27 27 H 1.09007 * 113.61642 * 254.53100 * 7 5 3 28 28 H 0.97005 * 120.00129 * 72.49260 * 10 8 7 29 29 H 1.08998 * 109.47069 * 89.99911 * 15 14 13 30 30 H 1.09003 * 109.47092 * 209.99850 * 15 14 13 31 31 H 1.08998 * 109.46766 * 329.99893 * 15 14 13 32 32 H 1.08002 * 126.06391 * 180.02562 * 16 14 13 33 33 H 1.09003 * 109.47185 * 124.97213 * 18 17 16 34 34 H 0.96695 * 113.99985 * 59.99561 * 19 18 17 35 35 H 1.48510 * 109.99643 * 58.67832 * 20 18 17 36 36 H 1.48497 * 110.00180 * 179.97438 * 20 18 17 37 37 H 0.96997 * 125.67629 * 180.26554 * 21 17 16 38 38 H 1.09004 * 113.61451 * 105.47354 * 22 5 3 39 39 H 1.08994 * 113.61477 * 334.56656 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 1 4.0243 0.6363 0.7558 7 6 4.1915 1.1235 -1.3961 8 6 5.1813 2.2269 -0.9866 9 1 6.0815 1.8497 -0.5013 10 7 5.4707 3.1830 -2.0582 11 6 6.6689 3.1616 -2.6748 12 8 7.5102 2.3479 -2.3418 13 6 6.9585 4.1185 -3.7481 14 6 8.1344 4.2113 -4.4618 15 6 9.3596 3.3519 -4.2847 16 6 7.9763 5.2537 -5.3804 17 6 6.7344 5.7685 -5.2151 18 6 6.1473 6.9112 -6.0028 19 8 5.9151 8.0203 -5.1322 20 14 7.3356 7.4146 -7.3464 21 7 6.1040 5.0844 -4.2295 22 6 4.1075 2.7144 0.0011 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.5241 1.4147 -2.2073 27 1 4.6620 0.1541 -1.5611 28 1 4.7999 3.8314 -2.3239 29 1 9.2879 2.4789 -4.9334 30 1 10.2478 3.9270 -4.5465 31 1 9.4293 3.0282 -3.2463 32 1 8.7137 5.5888 -6.0949 33 1 5.2044 6.5972 -6.4506 34 1 6.7124 8.3530 -4.6980 35 1 7.6101 6.2608 -8.2402 36 1 6.7679 8.5404 -8.1309 37 1 5.2013 5.2489 -3.9148 38 1 4.5103 3.0291 0.9639 39 1 3.4172 3.4407 -0.4278 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_13940406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:35:50 Heat of formation + Delta-G solvation = -84.160541 kcal Electronic energy + Delta-G solvation = -23463.730115 eV Core-core repulsion = 19760.635534 eV Total energy + Delta-G solvation = -3703.094582 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.62937 -41.97797 -40.59036 -39.08273 -37.69801 -37.47982 -34.90380 -33.43294 -31.64884 -29.46144 -28.21128 -27.52902 -26.88875 -26.19526 -23.26067 -22.10946 -21.51559 -21.13695 -20.21732 -19.45549 -19.01270 -18.04554 -18.04243 -17.49195 -16.88007 -16.59639 -16.29492 -16.20246 -15.81749 -15.36340 -15.11789 -14.81478 -14.46334 -14.41017 -14.25662 -13.93826 -13.68096 -13.62304 -13.53683 -13.52312 -13.05746 -12.96338 -12.56121 -12.39968 -12.18534 -11.99900 -11.90176 -11.86420 -11.48401 -11.11641 -10.65844 -10.27945 -9.82513 -9.20813 -4.91842 0.28549 1.00673 1.22821 1.52181 1.59566 1.72594 1.91905 2.07251 2.22172 2.22351 3.18284 3.26676 3.46610 3.57104 3.60022 3.69415 3.77881 3.98460 4.14588 4.21204 4.21937 4.24266 4.40558 4.47103 4.51195 4.56206 4.64464 4.72524 4.77041 4.82806 4.87041 4.91775 4.99245 5.17934 5.27703 5.33407 5.40519 5.63327 5.85942 6.27326 6.43659 6.59489 6.67472 7.02474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.537 6.537 5 C -0.104 4.104 6 H 0.154 0.846 7 C -0.130 4.130 8 C 0.127 3.873 9 H 0.123 0.877 10 N -0.711 5.711 11 C 0.591 3.409 12 O -0.556 6.556 13 C -0.073 4.073 14 C -0.084 4.084 15 C -0.090 4.090 16 C -0.206 4.206 17 C 0.032 3.968 18 C -0.056 4.056 19 O -0.555 6.555 20 Si 0.806 3.194 21 N -0.516 5.516 22 C -0.120 4.120 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.128 0.872 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.407 0.593 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.170 0.830 33 H 0.114 0.886 34 H 0.399 0.601 35 H -0.286 1.286 36 H -0.295 1.295 37 H 0.426 0.574 38 H 0.101 0.899 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 1.105 0.201 1.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.124 4.124 6 H 0.172 0.828 7 C -0.169 4.169 8 C 0.023 3.977 9 H 0.141 0.859 10 N -0.362 5.362 11 C 0.380 3.620 12 O -0.435 6.435 13 C -0.186 4.186 14 C -0.093 4.093 15 C -0.147 4.147 16 C -0.231 4.231 17 C -0.087 4.087 18 C -0.166 4.166 19 O -0.363 6.363 20 Si 0.710 3.290 21 N -0.113 5.113 22 C -0.158 4.158 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.146 0.854 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.242 0.758 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.187 0.813 33 H 0.132 0.868 34 H 0.250 0.750 35 H -0.212 1.212 36 H -0.223 1.223 37 H 0.265 0.735 38 H 0.120 0.880 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.042 0.795 -0.488 0.933 hybrid contribution -1.864 -0.057 0.265 1.883 sum -1.822 0.738 -0.223 1.978 Atomic orbital electron populations 1.23527 0.75032 1.05612 1.02448 1.86526 1.24768 1.33174 1.83439 1.23991 0.92514 0.81010 0.70931 1.90665 1.67891 1.37370 1.46789 1.22434 0.85928 1.01621 1.02374 0.82820 1.23422 0.97610 1.01356 0.94476 1.22475 0.97900 0.89503 0.87855 0.85944 1.45761 1.15538 1.37260 1.37595 1.17195 0.82024 0.82329 0.80485 1.90816 1.47374 1.39585 1.65680 1.20183 0.94162 0.99437 1.04802 1.20195 0.94720 0.98231 0.96111 1.20349 0.93808 0.98025 1.02559 1.20856 0.97147 1.00571 1.04477 1.21309 0.94215 0.98441 0.94708 1.25063 1.08053 0.84014 0.99444 1.86477 1.39372 1.47044 1.63371 0.92970 0.83638 0.77812 0.74604 1.41853 1.14872 1.25772 1.28842 1.23347 0.96455 0.94680 1.01295 0.91928 0.92100 0.85415 0.89546 0.88660 0.75757 0.91667 0.89875 0.91818 0.81312 0.86841 0.75037 1.21243 1.22294 0.73495 0.88037 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.89 10.57 -51.44 -0.54 -1.43 16 3 C 0.47 1.41 7.48 71.24 0.53 1.94 16 4 O -0.54 -4.72 15.65 21.97 0.34 -4.37 16 5 C -0.10 0.34 4.26 -11.01 -0.05 0.29 16 6 H 0.15 -1.14 8.14 -2.39 -0.02 -1.16 16 7 C -0.13 0.40 7.43 31.12 0.23 0.63 16 8 C 0.13 -0.31 4.24 45.53 0.19 -0.12 16 9 H 0.12 -0.09 7.46 -2.39 -0.02 -0.11 16 10 N -0.71 1.00 5.35 -443.94 -2.38 -1.38 16 11 C 0.59 2.92 7.79 86.45 0.67 3.59 16 12 O -0.56 -6.39 14.40 -4.32 -0.06 -6.46 16 13 C -0.07 -0.25 7.06 40.35 0.28 0.04 16 14 C -0.08 -0.34 6.21 -19.56 -0.12 -0.46 16 15 C -0.09 -0.33 9.83 71.24 0.70 0.37 16 16 C -0.21 0.06 9.27 22.01 0.20 0.26 16 17 C 0.03 -0.05 6.47 41.34 0.27 0.21 16 18 C -0.06 0.22 3.08 71.23 0.22 0.44 16 19 O -0.55 2.01 12.88 -148.98 -1.92 0.09 16 20 Si 0.81 -3.89 30.56 68.60 2.10 -1.79 16 21 N -0.52 0.83 5.99 -171.94 -1.03 -0.20 16 22 C -0.12 0.48 7.16 31.14 0.22 0.70 16 23 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 24 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 25 H 0.13 -0.85 8.14 -2.38 -0.02 -0.87 16 26 H 0.09 -0.18 8.09 -2.38 -0.02 -0.20 16 27 H 0.09 -0.32 8.14 -2.38 -0.02 -0.34 16 28 H 0.41 -2.38 7.86 -92.70 -0.73 -3.10 16 29 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 0.48 6.49 -2.39 -0.02 0.46 16 32 H 0.17 -0.84 6.19 -2.91 -0.02 -0.86 16 33 H 0.11 -0.43 7.96 -2.39 -0.02 -0.45 16 34 H 0.40 -4.33 8.70 -74.06 -0.64 -4.98 16 35 H -0.29 -0.24 7.11 99.48 0.71 0.47 16 36 H -0.30 -0.68 7.11 99.48 0.71 0.03 16 37 H 0.43 -2.62 8.19 -92.71 -0.76 -3.38 16 38 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.10 -0.21 7.41 -2.39 -0.02 -0.23 16 Total: 0.00 -21.86 333.90 0.09 -21.77 By element: Atomic # 1 Polarization: -14.31 SS G_CDS: -0.98 Total: -15.29 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 4.56 Total: 9.05 kcal Atomic # 7 Polarization: 1.83 SS G_CDS: -3.41 Total: -1.57 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -2.18 Total: -12.17 kcal Atomic # 14 Polarization: -3.89 SS G_CDS: 2.10 Total: -1.79 kcal Total: -21.86 0.09 -21.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_13940406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.386 kcal (2) G-P(sol) polarization free energy of solvation -21.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds