Wall clock time and date at job start Sat Mar 6 2021 15:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34232 * 116.99772 * 2 1 4 4 O 1.20819 * 119.99731 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99497 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.84630 * 48.80850 * 5 3 2 7 7 C 1.53786 * 113.61366 * 179.97438 * 5 3 2 8 8 C 1.53780 * 87.07930 * 140.06696 * 7 5 3 9 9 H 1.08998 * 113.61138 * 89.20767 * 8 7 5 10 10 N 1.46499 * 113.61171 * 220.01974 * 8 7 5 11 11 C 1.34771 * 119.99941 * 203.46908 * 10 8 7 12 12 O 1.21626 * 119.99894 * 0.02562 * 11 10 8 13 13 C 1.47265 * 120.00326 * 179.97438 * 11 10 8 14 14 C 1.36336 * 126.97200 * 180.02562 * 13 11 10 15 15 C 1.51001 * 126.78974 * 0.03100 * 14 13 11 16 16 C 1.53390 * 108.25245 * 164.33673 * 15 14 13 17 17 C 1.53161 * 109.05001 * 48.45742 * 16 15 14 18 18 C 1.53140 * 109.52117 * 290.42655 * 17 16 15 19 19 N 1.35217 * 108.66084 * 179.76766 * 14 13 11 20 20 C 1.36421 * 109.89563 * 0.40542 * 19 14 13 21 21 C 1.50701 * 125.48910 * 179.85357 * 20 19 14 22 22 O 1.42896 * 109.47417 * 29.71780 * 21 20 19 23 23 Si 1.86301 * 109.47149 * 149.71796 * 21 20 19 24 24 C 1.34497 * 109.01709 * 359.58717 * 20 19 14 25 25 C 1.53783 * 87.17386 * 334.60983 * 8 7 5 26 26 H 1.09001 * 109.47061 * 59.99962 * 1 2 3 27 27 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47043 * 300.00117 * 1 2 3 29 29 H 1.09007 * 113.60857 * 25.52253 * 7 5 3 30 30 H 1.08995 * 113.61627 * 254.62360 * 7 5 3 31 31 H 0.96996 * 120.00167 * 23.47996 * 10 8 7 32 32 H 1.09001 * 109.70710 * 284.02571 * 15 14 13 33 33 H 1.09001 * 109.70888 * 44.64584 * 15 14 13 34 34 H 1.09004 * 109.54392 * 168.32784 * 16 15 14 35 35 H 1.09003 * 109.54402 * 288.58835 * 16 15 14 36 36 H 1.08997 * 109.46042 * 50.43706 * 17 16 15 37 37 H 1.08997 * 109.46452 * 170.41029 * 17 16 15 38 38 H 1.09000 * 109.56326 * 170.82746 * 18 17 16 39 39 H 1.08998 * 109.56516 * 291.06134 * 18 17 16 40 40 H 1.09002 * 109.47060 * 269.71806 * 21 20 19 41 41 H 0.96708 * 114.00101 * 59.99427 * 22 21 20 42 42 H 1.48493 * 110.00101 * 179.97438 * 23 21 20 43 43 H 1.48502 * 109.99925 * 301.31801 * 23 21 20 44 44 H 1.07995 * 126.81850 * 180.23400 * 24 20 19 45 45 H 1.08999 * 113.60958 * 139.93715 * 25 8 7 46 46 H 1.08995 * 113.62017 * 270.83934 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0239 0.6362 -0.7550 7 6 4.1078 2.7142 -0.0001 8 6 5.1821 2.2269 0.9865 9 1 6.0820 1.8496 0.5008 10 7 5.4722 3.1832 2.0576 11 6 6.6591 3.1420 2.6946 12 8 7.4897 2.3110 2.3798 13 6 6.9511 4.1036 3.7710 14 6 8.0969 4.1902 4.5048 15 6 9.3222 3.3173 4.3746 16 6 10.4829 4.0072 5.1023 17 6 10.0118 4.4450 6.4923 18 6 9.0077 5.5930 6.3542 19 7 7.9698 5.2068 5.3871 20 6 6.7441 5.7899 5.2502 21 6 6.2333 6.9532 6.0607 22 8 7.3321 7.7750 6.4597 23 14 5.0500 7.9566 5.0293 24 6 6.0674 5.1630 4.2715 25 6 4.1945 1.1221 1.3978 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.4177 3.4405 0.4295 30 1 4.5098 3.0290 -0.9631 31 1 4.8099 3.8460 2.3086 32 1 9.1304 2.3447 4.8277 33 1 9.5725 3.1899 3.3214 34 1 11.3159 3.3111 5.2022 35 1 10.8022 4.8806 4.5337 36 1 9.5350 3.6041 6.9958 37 1 10.8684 4.7801 7.0772 38 1 8.5505 5.7965 7.3226 39 1 9.5210 6.4861 5.9979 40 1 5.7179 6.5808 6.9460 41 1 7.8376 8.1417 5.7213 42 1 4.5385 9.1066 5.8174 43 1 5.7319 8.4436 3.8033 44 1 5.0715 5.3934 3.9232 45 1 4.6667 0.1534 1.5617 46 1 3.5283 1.4122 2.2102 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_16915396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:36:00 Heat of formation + Delta-G solvation = -83.993890 kcal Electronic energy + Delta-G solvation = -29245.614911 eV Core-core repulsion = 25103.226178 eV Total energy + Delta-G solvation = -4142.388734 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.78442 -41.89110 -40.50017 -38.93419 -38.06223 -37.37373 -36.87254 -34.40100 -33.46053 -31.16726 -29.78759 -29.10127 -27.04585 -26.75925 -26.35140 -24.63676 -24.06063 -22.23274 -21.72515 -21.19207 -20.60397 -19.60952 -18.92149 -18.78660 -17.92560 -17.39211 -17.31019 -17.03365 -16.67118 -16.30513 -16.15577 -15.77946 -15.63026 -15.32325 -15.24598 -15.11500 -14.71484 -14.70296 -14.37837 -14.31985 -14.13308 -13.89379 -13.54097 -13.42975 -13.19667 -12.95605 -12.74688 -12.42822 -12.39949 -12.27243 -12.15167 -12.01211 -11.85152 -11.81080 -11.75847 -11.72543 -11.36815 -10.90347 -10.84706 -10.04460 -9.55701 -9.03818 -4.90888 0.72865 1.05675 1.10984 1.44158 1.66243 1.70792 1.80790 2.04288 2.49750 2.54572 3.21371 3.31611 3.39858 3.47379 3.57314 3.68264 3.75754 3.78689 3.81904 3.82581 4.04975 4.19603 4.29566 4.30104 4.32106 4.34809 4.40509 4.51970 4.57985 4.63191 4.65867 4.70732 4.72136 4.75711 4.78637 4.82040 4.89784 4.95597 4.98663 5.01833 5.13315 5.20169 5.24208 5.37591 5.61760 5.74569 6.03373 6.21851 6.35265 6.68174 6.70758 7.37833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.105 4.105 6 H 0.150 0.850 7 C -0.118 4.118 8 C 0.128 3.872 9 H 0.114 0.886 10 N -0.706 5.706 11 C 0.592 3.408 12 O -0.585 6.585 13 C -0.257 4.257 14 C 0.103 3.897 15 C -0.053 4.053 16 C -0.124 4.124 17 C -0.135 4.135 18 C 0.105 3.895 19 N -0.429 5.429 20 C -0.018 4.018 21 C -0.053 4.053 22 O -0.544 6.544 23 Si 0.795 3.205 24 C -0.162 4.162 25 C -0.129 4.129 26 H 0.061 0.939 27 H 0.126 0.874 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.413 0.587 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.385 0.615 42 H -0.296 1.296 43 H -0.291 1.291 44 H 0.181 0.819 45 H 0.090 0.910 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.812 -0.044 1.397 1.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.125 4.125 6 H 0.167 0.833 7 C -0.156 4.156 8 C 0.022 3.978 9 H 0.132 0.868 10 N -0.356 5.356 11 C 0.382 3.618 12 O -0.467 6.467 13 C -0.267 4.267 14 C -0.015 4.015 15 C -0.091 4.091 16 C -0.161 4.161 17 C -0.172 4.172 18 C -0.015 4.015 19 N -0.105 5.105 20 C -0.127 4.127 21 C -0.162 4.162 22 O -0.352 6.352 23 Si 0.699 3.301 24 C -0.185 4.185 25 C -0.167 4.167 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.250 0.750 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.148 0.852 41 H 0.234 0.766 42 H -0.224 1.224 43 H -0.218 1.218 44 H 0.198 0.802 45 H 0.108 0.892 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.617 0.427 1.680 1.840 hybrid contribution 0.481 0.616 0.024 0.782 sum -0.136 1.043 1.704 2.002 Atomic orbital electron populations 1.23519 0.75083 1.05513 1.02495 1.86527 1.24740 1.33289 1.83511 1.23963 0.92445 0.80995 0.70963 1.90659 1.67818 1.37288 1.46685 1.22456 0.85951 1.01704 1.02370 0.83278 1.23328 0.96549 0.94619 1.01129 1.22361 0.97453 0.89766 0.88197 0.86839 1.45615 1.17057 1.36222 1.36747 1.17543 0.81413 0.82220 0.80583 1.90736 1.48221 1.40120 1.67650 1.19998 0.97380 1.04464 1.04822 1.20588 0.97138 0.91572 0.92205 1.20441 0.89757 0.96581 1.02328 1.21698 0.97706 1.01286 0.95455 1.21931 0.99392 0.97774 0.98118 1.22251 0.88000 0.98914 0.92370 1.44036 1.13620 1.24767 1.28103 1.20965 0.87251 1.01478 1.02983 1.24989 0.94989 0.90861 1.05328 1.86565 1.44087 1.67189 1.37334 0.93517 0.82553 0.79360 0.74698 1.22004 1.00626 0.97320 0.98563 1.23446 0.97695 1.01157 0.94450 0.91993 0.85568 0.91938 0.88158 0.88390 0.74960 0.90101 0.89919 0.89238 0.91376 0.91282 0.87483 0.88421 0.88964 0.85205 0.76620 1.22366 1.21769 0.80166 0.89162 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.36 -1.01 10.57 -51.44 -0.54 -1.56 16 3 C 0.47 1.57 7.49 71.23 0.53 2.11 16 4 O -0.53 -4.68 15.65 21.98 0.34 -4.33 16 5 C -0.11 0.25 4.26 -10.95 -0.05 0.20 16 6 H 0.15 -0.92 8.14 -2.39 -0.02 -0.94 16 7 C -0.12 0.36 7.15 31.12 0.22 0.58 16 8 C 0.13 -0.11 4.21 45.52 0.19 0.08 16 9 H 0.11 0.16 7.50 -2.39 -0.02 0.14 16 10 N -0.71 -0.37 5.36 -443.46 -2.38 -2.75 16 11 C 0.59 4.20 7.81 86.62 0.68 4.87 16 12 O -0.59 -7.97 14.95 -4.11 -0.06 -8.03 16 13 C -0.26 -1.36 6.28 -19.12 -0.12 -1.48 16 14 C 0.10 0.53 6.57 41.69 0.27 0.80 16 15 C -0.05 -0.20 5.32 30.07 0.16 -0.04 16 16 C -0.12 0.23 5.98 30.78 0.18 0.41 16 17 C -0.13 0.53 5.92 30.69 0.18 0.72 16 18 C 0.10 -0.28 5.32 86.33 0.46 0.18 16 19 N -0.43 -0.67 3.11 -493.58 -1.54 -2.21 16 20 C -0.02 0.00 6.15 40.99 0.25 0.25 16 21 C -0.05 0.16 2.99 71.24 0.21 0.37 16 22 O -0.54 0.85 10.68 -148.98 -1.59 -0.74 16 23 Si 0.80 -3.14 31.11 68.60 2.13 -1.01 16 24 C -0.16 0.04 9.09 23.64 0.21 0.26 16 25 C -0.13 0.24 7.45 31.18 0.23 0.47 16 26 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 27 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 28 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 29 H 0.10 -0.20 7.41 -2.38 -0.02 -0.21 16 30 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.41 -1.77 7.84 -92.71 -0.73 -2.49 16 32 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.57 7.40 -2.39 -0.02 0.55 16 34 H 0.09 -0.34 8.14 -2.38 -0.02 -0.36 16 35 H 0.07 -0.11 8.12 -2.39 -0.02 -0.13 16 36 H 0.07 -0.16 8.11 -2.39 -0.02 -0.18 16 37 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 38 H 0.10 -0.27 7.70 -2.39 -0.02 -0.28 16 39 H 0.09 -0.44 7.94 -2.39 -0.02 -0.46 16 40 H 0.13 -0.62 7.96 -2.39 -0.02 -0.63 16 41 H 0.38 -2.20 8.64 -74.05 -0.64 -2.84 16 42 H -0.30 -0.92 7.11 99.48 0.71 -0.21 16 43 H -0.29 -0.56 7.11 99.48 0.71 0.14 16 44 H 0.18 -1.35 6.52 -2.91 -0.02 -1.37 16 45 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.09 -0.12 8.10 -2.39 -0.02 -0.14 16 Total: 0.00 -22.08 374.69 0.88 -21.20 By element: Atomic # 1 Polarization: -11.22 SS G_CDS: -0.31 Total: -11.54 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 4.83 Total: 10.95 kcal Atomic # 7 Polarization: -1.04 SS G_CDS: -3.91 Total: -4.96 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -1.85 Total: -14.65 kcal Atomic # 14 Polarization: -3.14 SS G_CDS: 2.13 Total: -1.01 kcal Total: -22.08 0.88 -21.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_16915396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.796 kcal (2) G-P(sol) polarization free energy of solvation -22.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds