Wall clock time and date at job start Sat Mar 6 2021 15:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00572 * 2 1 4 4 O 1.20835 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00487 * 180.02562 * 3 2 1 6 6 H 1.08997 * 112.85021 * 311.18935 * 5 3 2 7 7 C 1.53781 * 113.61886 * 82.49953 * 5 3 2 8 8 C 1.53778 * 87.08214 * 139.98186 * 7 5 3 9 9 H 1.09001 * 113.69018 * 89.12635 * 8 7 5 10 10 N 1.46501 * 113.61393 * 220.01919 * 8 7 5 11 11 C 1.34777 * 119.99982 * 252.49833 * 10 8 7 12 12 O 1.21284 * 119.99729 * 359.97438 * 11 10 8 13 13 C 1.50700 * 119.99963 * 180.02562 * 11 10 8 14 14 O 1.42897 * 109.46917 * 180.02562 * 13 11 10 15 15 C 1.35906 * 117.00191 * 180.02562 * 14 13 11 16 16 C 1.38734 * 120.04952 * 359.72485 * 15 14 13 17 17 C 1.38147 * 119.94087 * 179.70241 * 16 15 14 18 18 C 1.38270 * 120.05253 * 0.59170 * 17 16 15 19 19 C 1.50700 * 119.94442 * 179.70136 * 18 17 16 20 20 O 1.42901 * 109.47298 * 244.98095 * 19 18 17 21 21 Si 1.86306 * 109.46818 * 4.98197 * 19 18 17 22 22 C 1.38264 * 120.11318 * 359.68327 * 18 17 16 23 23 C 1.38141 * 120.05697 * 0.02562 * 22 18 17 24 24 C 1.53777 * 87.08292 * 334.56929 * 8 7 5 25 25 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46782 * 60.00258 * 1 2 3 27 27 H 1.09004 * 109.47085 * 300.00378 * 1 2 3 28 28 H 1.08999 * 113.60871 * 254.53185 * 7 5 3 29 29 H 1.09001 * 113.61041 * 25.43090 * 7 5 3 30 30 H 0.96997 * 120.00419 * 72.49720 * 10 8 7 31 31 H 1.09000 * 109.47155 * 299.99624 * 13 11 10 32 32 H 1.08997 * 109.46949 * 60.00195 * 13 11 10 33 33 H 1.08001 * 120.03104 * 359.97438 * 16 15 14 34 34 H 1.07990 * 119.97247 * 180.27247 * 17 16 15 35 35 H 1.09000 * 109.47050 * 124.97218 * 19 18 17 36 36 H 0.96694 * 114.00101 * 60.00036 * 20 19 18 37 37 H 1.48497 * 109.99870 * 180.02562 * 21 19 18 38 38 H 1.48507 * 109.99872 * 301.31358 * 21 19 18 39 39 H 1.08006 * 119.97353 * 180.02562 * 22 18 17 40 40 H 1.07999 * 120.03191 * 180.02562 * 23 22 18 41 41 H 1.09004 * 113.61263 * 270.88749 * 24 8 7 42 42 H 1.09000 * 113.69244 * 139.99244 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0239 0.6362 0.7550 7 6 4.1907 1.1236 -1.3978 8 6 5.1808 2.2268 -0.9886 9 1 6.0813 1.8494 -0.5041 10 7 5.4695 3.1832 -2.0601 11 6 6.6673 3.1619 -2.6777 12 8 7.5062 2.3513 -2.3460 13 6 6.9645 4.1461 -3.7796 14 8 8.2873 3.9242 -4.2723 15 6 8.7157 4.7340 -5.2762 16 6 7.8779 5.7181 -5.7805 17 6 8.3178 6.5440 -6.7967 18 6 9.5876 6.3825 -7.3195 19 6 10.0627 7.2804 -8.4327 20 8 10.2742 6.5041 -9.6136 21 14 8.7764 8.5854 -8.7695 22 6 10.4225 5.3987 -6.8225 23 6 9.9894 4.5742 -5.8023 24 6 4.1079 2.7141 -0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 4.6610 0.1543 -1.5633 29 1 3.5227 1.4150 -2.2083 30 1 4.7987 3.8317 -2.3252 31 1 6.2480 4.0115 -4.5899 32 1 6.8867 5.1613 -3.3906 33 1 6.8841 5.8413 -5.3759 34 1 7.6676 7.3131 -7.1866 35 1 10.9973 7.7587 -8.1399 36 1 9.4827 6.0490 -9.9322 37 1 9.2326 9.4772 -9.8658 38 1 7.4882 7.9454 -9.1389 39 1 11.4141 5.2748 -7.2323 40 1 10.6420 3.8062 -5.4141 41 1 3.4173 3.4404 -0.4291 42 1 4.5100 3.0293 0.9623 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_2989410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:36:05 Heat of formation + Delta-G solvation = -126.953855 kcal Electronic energy + Delta-G solvation = -25782.116558 eV Core-core repulsion = 21695.683898 eV Total energy + Delta-G solvation = -4086.432661 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.03182 -41.49479 -40.70859 -39.43622 -38.77206 -37.44687 -37.21756 -34.71705 -32.38633 -31.75431 -30.07518 -29.08123 -26.83655 -26.76972 -26.11972 -24.08294 -22.80533 -22.21718 -21.71597 -20.69131 -19.52995 -18.98891 -18.43220 -18.12274 -17.97627 -17.48352 -17.39285 -16.98954 -16.66076 -16.26863 -16.17381 -15.96210 -15.56423 -15.51953 -15.03118 -14.64645 -14.47785 -14.35966 -14.28617 -13.73322 -13.71426 -13.57545 -13.50323 -13.35094 -13.01642 -12.55611 -12.34991 -12.28679 -12.11594 -12.05990 -11.86108 -11.82339 -11.60105 -11.43932 -10.99613 -10.57274 -10.19859 -10.03168 -9.23739 -4.90158 0.27835 0.31581 1.04707 1.34234 1.40708 1.42918 1.60889 1.76896 1.98693 2.61809 2.65256 3.22819 3.30799 3.45711 3.52704 3.63518 3.73734 3.75468 3.83221 3.94557 4.01637 4.05042 4.10566 4.25181 4.27948 4.31327 4.43066 4.49121 4.55820 4.57190 4.62965 4.68123 4.70707 4.82041 4.92433 4.98043 5.04589 5.16439 5.26198 5.32309 5.43062 5.50379 5.70222 6.25886 6.44368 6.51289 6.63755 7.09176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.107 4.107 6 H 0.149 0.851 7 C -0.130 4.130 8 C 0.126 3.874 9 H 0.114 0.886 10 N -0.701 5.701 11 C 0.516 3.484 12 O -0.569 6.569 13 C 0.035 3.965 14 O -0.319 6.319 15 C 0.122 3.878 16 C -0.201 4.201 17 C -0.078 4.078 18 C -0.158 4.158 19 C -0.082 4.082 20 O -0.551 6.551 21 Si 0.771 3.229 22 C -0.060 4.060 23 C -0.166 4.166 24 C -0.117 4.117 25 H 0.126 0.874 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.421 0.579 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.121 0.879 36 H 0.385 0.615 37 H -0.308 1.308 38 H -0.277 1.277 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 2.429 1.880 6.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.127 4.127 6 H 0.167 0.833 7 C -0.169 4.169 8 C 0.021 3.979 9 H 0.132 0.868 10 N -0.354 5.354 11 C 0.303 3.697 12 O -0.447 6.447 13 C -0.043 4.043 14 O -0.232 6.232 15 C 0.076 3.924 16 C -0.219 4.219 17 C -0.095 4.095 18 C -0.159 4.159 19 C -0.191 4.191 20 O -0.360 6.360 21 Si 0.677 3.323 22 C -0.078 4.078 23 C -0.184 4.184 24 C -0.155 4.155 25 H 0.145 0.855 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.259 0.741 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.181 0.819 34 H 0.168 0.832 35 H 0.139 0.861 36 H 0.235 0.765 37 H -0.237 1.237 38 H -0.204 1.204 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.121 0.879 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.926 2.538 1.715 5.801 hybrid contribution -0.658 -0.872 -0.778 1.341 sum -5.584 1.666 0.937 5.902 Atomic orbital electron populations 1.23527 0.75015 1.05572 1.02506 1.86523 1.24793 1.33319 1.83467 1.23971 0.92470 0.80990 0.70969 1.90667 1.67856 1.37267 1.46720 1.22436 0.85970 1.01882 1.02393 0.83301 1.23434 0.97665 1.01167 0.94613 1.22411 0.97637 0.89747 0.88125 0.86765 1.45660 1.15520 1.37287 1.36952 1.20545 0.82072 0.84236 0.82894 1.90768 1.47787 1.40500 1.65606 1.22764 0.84176 1.00367 0.96999 1.86127 1.32099 1.55524 1.49450 1.19214 0.94014 0.90770 0.88353 1.21494 1.01648 0.97717 1.01046 1.21094 0.94863 0.98199 0.95346 1.20273 0.95458 0.99770 1.00357 1.25229 1.11005 0.99015 0.83804 1.86573 1.39699 1.66469 1.43221 0.94100 0.74208 0.77894 0.86105 1.20928 0.99933 0.93172 0.93758 1.20627 0.94978 1.03037 0.99800 1.23333 0.96389 0.94568 1.01173 0.85536 0.91929 0.91963 0.89145 0.88813 0.74080 0.85825 0.85377 0.81887 0.83173 0.86107 0.76544 1.23664 1.20366 0.84805 0.85476 0.87924 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.13 16 2 O -0.37 -0.55 10.56 -51.36 -0.54 -1.09 16 3 C 0.47 0.76 7.48 71.23 0.53 1.29 16 4 O -0.54 -3.77 15.65 21.94 0.34 -3.42 16 5 C -0.11 0.49 4.26 -11.01 -0.05 0.44 16 6 H 0.15 -1.18 8.14 -2.39 -0.02 -1.20 16 7 C -0.13 0.62 7.43 31.12 0.23 0.86 16 8 C 0.13 -0.57 4.24 45.51 0.19 -0.37 16 9 H 0.11 -0.16 7.46 -2.39 -0.02 -0.18 16 10 N -0.70 4.10 5.35 -440.04 -2.36 1.74 16 11 C 0.52 0.42 7.91 87.66 0.69 1.11 16 12 O -0.57 -6.87 16.10 15.99 0.26 -6.61 16 13 C 0.03 -0.16 5.22 71.24 0.37 0.21 16 14 O -0.32 -1.52 9.67 -73.46 -0.71 -2.23 16 15 C 0.12 0.32 6.69 22.51 0.15 0.47 16 16 C -0.20 0.63 9.04 22.37 0.20 0.83 16 17 C -0.08 0.24 8.66 22.26 0.19 0.44 16 18 C -0.16 0.04 5.35 -19.85 -0.11 -0.06 16 19 C -0.08 0.08 2.80 71.24 0.20 0.28 16 20 O -0.55 -1.51 12.83 -148.98 -1.91 -3.42 16 21 Si 0.77 -2.50 29.88 68.60 2.05 -0.45 16 22 C -0.06 -0.13 9.68 22.25 0.22 0.08 16 23 C -0.17 -0.69 9.99 22.36 0.22 -0.46 16 24 C -0.12 0.71 7.16 31.12 0.22 0.93 16 25 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 26 H 0.06 -0.13 8.13 -2.39 -0.02 -0.15 16 27 H 0.06 -0.11 8.13 -2.38 -0.02 -0.13 16 28 H 0.09 -0.39 8.14 -2.39 -0.02 -0.40 16 29 H 0.09 -0.46 8.09 -2.39 -0.02 -0.48 16 30 H 0.42 -5.23 8.73 -92.71 -0.81 -6.04 16 31 H 0.12 -1.31 7.65 -2.39 -0.02 -1.33 16 32 H 0.13 -1.42 7.67 -2.39 -0.02 -1.44 16 33 H 0.16 -1.68 6.30 -2.91 -0.02 -1.70 16 34 H 0.15 -1.15 4.83 -2.92 -0.01 -1.17 16 35 H 0.12 -0.25 7.96 -2.39 -0.02 -0.27 16 36 H 0.39 -1.14 8.70 -74.06 -0.64 -1.79 16 37 H -0.31 -1.62 7.11 99.48 0.71 -0.92 16 38 H -0.28 0.16 7.01 99.48 0.70 0.86 16 39 H 0.13 0.16 8.06 -2.91 -0.02 0.14 16 40 H 0.13 0.58 8.06 -2.91 -0.02 0.56 16 41 H 0.10 -0.55 7.41 -2.38 -0.02 -0.57 16 42 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 Total: 0.00 -27.48 360.38 1.25 -26.23 By element: Atomic # 1 Polarization: -17.57 SS G_CDS: -0.36 Total: -17.93 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 4.47 Total: 7.17 kcal Atomic # 7 Polarization: 4.10 SS G_CDS: -2.36 Total: 1.74 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -2.56 Total: -16.77 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: 2.05 Total: -0.45 kcal Total: -27.48 1.25 -26.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_2989410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.724 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds