Wall clock time and date at job start Sat Mar 6 2021 15:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 116.99972 * 2 1 4 4 O 1.20829 * 120.00243 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00120 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.85047 * 50.33376 * 5 3 2 7 7 C 1.53781 * 113.61772 * 181.53091 * 5 3 2 8 8 C 1.53777 * 87.08336 * 140.06093 * 7 5 3 9 9 H 1.09003 * 113.60961 * 89.20081 * 8 7 5 10 10 N 1.46500 * 113.61534 * 220.01705 * 8 7 5 11 11 C 1.34779 * 119.99895 * 204.99945 * 10 8 7 12 12 O 1.21276 * 120.00229 * 0.02562 * 11 10 8 13 13 C 1.50701 * 119.99810 * 180.02562 * 11 10 8 14 14 C 1.53001 * 109.46866 * 179.97438 * 13 11 10 15 15 O 1.42899 * 109.46701 * 179.97438 * 14 13 11 16 16 C 1.35906 * 116.99998 * 180.02562 * 15 14 13 17 17 C 1.38708 * 120.05786 * 179.72925 * 16 15 14 18 18 C 1.38164 * 119.94328 * 179.72774 * 17 16 15 19 19 C 1.50702 * 119.97253 * 180.27576 * 18 17 16 20 20 O 1.42896 * 109.47188 * 300.29752 * 19 18 17 21 21 Si 1.86300 * 109.46954 * 180.29526 * 19 18 17 22 22 C 1.38248 * 120.05639 * 0.56931 * 18 17 16 23 23 C 1.38289 * 120.10912 * 359.68298 * 22 18 17 24 24 C 1.38125 * 120.05372 * 0.04596 * 23 22 18 25 25 C 1.53775 * 87.07992 * 334.56762 * 8 7 5 26 26 H 1.08997 * 109.47241 * 299.99853 * 1 2 3 27 27 H 1.09000 * 109.47033 * 60.00173 * 1 2 3 28 28 H 1.09000 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.08997 * 113.61673 * 254.61641 * 7 5 3 30 30 H 1.09005 * 113.61396 * 25.51470 * 7 5 3 31 31 H 0.97002 * 120.00084 * 25.00713 * 10 8 7 32 32 H 1.08995 * 109.47452 * 300.00609 * 13 11 10 33 33 H 1.09002 * 109.47008 * 59.99988 * 13 11 10 34 34 H 1.08991 * 109.47523 * 300.00019 * 14 13 11 35 35 H 1.09003 * 109.46822 * 60.01003 * 14 13 11 36 36 H 1.08004 * 120.03003 * 359.97438 * 17 16 15 37 37 H 1.09000 * 109.47163 * 60.29458 * 19 18 17 38 38 H 0.96705 * 113.99471 * 299.99877 * 20 19 18 39 39 H 1.48507 * 109.99989 * 179.97438 * 21 19 18 40 40 H 1.48505 * 110.00247 * 301.31613 * 21 19 18 41 41 H 1.07997 * 119.94498 * 179.70350 * 22 18 17 42 42 H 1.08002 * 119.97180 * 180.02562 * 23 22 18 43 43 H 1.08001 * 120.02277 * 180.02562 * 24 23 22 44 44 H 1.08993 * 113.61636 * 270.87622 * 25 8 7 45 45 H 1.09008 * 113.61006 * 139.97865 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0223 0.6569 -0.7741 7 6 4.1078 2.7137 0.0371 8 6 5.1841 2.1995 1.0077 9 1 6.0830 1.8357 0.5098 10 7 5.4766 3.1261 2.1041 11 6 6.6765 3.0879 2.7167 12 8 7.5143 2.2869 2.3600 13 6 6.9771 4.0407 3.8449 14 6 8.3954 3.7890 4.3607 15 8 8.6807 4.6929 5.4301 16 6 9.9091 4.6015 6.0042 17 6 10.2552 5.4519 7.0439 18 6 11.5027 5.3532 7.6295 19 6 11.8771 6.2727 8.7633 20 8 11.8038 7.6293 8.3204 21 14 13.6137 5.8946 9.3218 22 6 12.4100 4.4156 7.1722 23 6 12.0693 3.5701 6.1323 24 6 10.8214 3.6611 5.5473 25 6 4.1954 1.0854 1.3898 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.5078 3.0549 -0.9177 30 1 3.4187 3.4279 0.4880 31 1 4.8066 3.7670 2.3892 32 1 6.8976 5.0665 3.4852 33 1 6.2635 3.8830 4.6536 34 1 8.4745 2.7633 4.7206 35 1 9.1093 3.9466 3.5522 36 1 9.5486 6.1880 7.3980 37 1 11.1876 6.1241 9.5944 38 1 12.3924 7.8338 7.5808 39 1 13.9952 6.7951 10.4394 40 1 13.7107 4.4774 9.7551 41 1 13.3863 4.3432 7.6281 42 1 12.7797 2.8383 5.7772 43 1 10.5557 3.0003 4.7354 44 1 3.5304 1.3544 2.2104 45 1 4.6664 0.1120 1.5269 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_4549614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:36:11 Heat of formation + Delta-G solvation = -136.261997 kcal Electronic energy + Delta-G solvation = -27390.295957 eV Core-core repulsion = 23147.922046 eV Total energy + Delta-G solvation = -4242.373911 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.02138 -41.38108 -40.85485 -39.38937 -38.96200 -37.46370 -37.25855 -34.66794 -33.20626 -32.45335 -30.86118 -29.39087 -27.31054 -26.83972 -26.81439 -25.19873 -23.67158 -22.64395 -21.96754 -21.53399 -20.62725 -19.34096 -18.99390 -18.14743 -18.03642 -17.65418 -17.50992 -17.44540 -17.12179 -16.87707 -16.46496 -16.28733 -16.12252 -15.89742 -15.40185 -14.94825 -14.79834 -14.54401 -14.44849 -14.22421 -14.20784 -14.07102 -13.62027 -13.51026 -13.23468 -13.03389 -12.90668 -12.83795 -12.53344 -12.36570 -12.34768 -11.99334 -11.87337 -11.83192 -11.80431 -11.62571 -11.44636 -11.04790 -10.50439 -10.15421 -9.92486 -9.27519 -4.97736 0.19652 0.38816 1.03887 1.30467 1.48111 1.57982 1.65801 1.81356 1.97883 2.51588 2.66724 3.22743 3.30960 3.50695 3.55953 3.63790 3.66259 3.73908 3.84545 3.89492 3.94212 4.03621 4.09979 4.23223 4.24249 4.26704 4.28282 4.38279 4.49174 4.51533 4.56765 4.61443 4.62927 4.67000 4.67322 4.75866 4.81840 4.91287 4.97765 5.07797 5.25788 5.31293 5.37760 5.43733 5.45639 5.70266 6.32616 6.42699 6.62603 6.76007 7.11189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.537 6.537 5 C -0.107 4.107 6 H 0.151 0.849 7 C -0.119 4.119 8 C 0.125 3.875 9 H 0.118 0.882 10 N -0.707 5.707 11 C 0.524 3.476 12 O -0.578 6.578 13 C -0.135 4.135 14 C 0.074 3.926 15 O -0.326 6.326 16 C 0.117 3.883 17 C -0.142 4.142 18 C -0.085 4.085 19 C -0.078 4.078 20 O -0.555 6.555 21 Si 0.786 3.214 22 C -0.158 4.158 23 C -0.075 4.075 24 C -0.211 4.211 25 C -0.130 4.130 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.127 0.873 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.418 0.582 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.396 0.604 39 H -0.299 1.299 40 H -0.284 1.284 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.138 0.862 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -1.432 -2.879 3.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.426 6.426 5 C -0.126 4.126 6 H 0.169 0.831 7 C -0.158 4.158 8 C 0.020 3.980 9 H 0.136 0.864 10 N -0.359 5.359 11 C 0.312 3.688 12 O -0.458 6.458 13 C -0.175 4.175 14 C -0.001 4.001 15 O -0.240 6.240 16 C 0.072 3.928 17 C -0.161 4.161 18 C -0.085 4.085 19 C -0.188 4.188 20 O -0.363 6.363 21 Si 0.692 3.308 22 C -0.175 4.175 23 C -0.093 4.093 24 C -0.229 4.229 25 C -0.168 4.168 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.255 0.745 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.124 0.876 38 H 0.246 0.754 39 H -0.227 1.227 40 H -0.211 1.211 41 H 0.165 0.835 42 H 0.171 0.829 43 H 0.156 0.844 44 H 0.108 0.892 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.579 -1.799 -1.975 2.733 hybrid contribution -1.548 0.012 0.056 1.549 sum -0.969 -1.786 -1.919 2.795 Atomic orbital electron populations 1.23525 0.75040 1.05592 1.02469 1.86523 1.24770 1.33262 1.83471 1.24013 0.92543 0.80988 0.70949 1.90670 1.67897 1.37340 1.46743 1.22448 0.85858 1.01715 1.02574 0.83114 1.23332 0.96545 0.94561 1.01313 1.22412 0.97590 0.90124 0.87872 0.86405 1.45849 1.15971 1.38589 1.35469 1.20581 0.81666 0.83525 0.83049 1.90734 1.47789 1.40833 1.66417 1.21455 0.96890 1.01467 0.97671 1.22452 0.97018 0.92591 0.88082 1.85956 1.30590 1.58260 1.49166 1.19144 0.84647 0.95437 0.93612 1.20306 0.97721 1.00793 0.97272 1.20244 0.93545 0.97254 0.97465 1.25305 1.13300 0.83297 0.96876 1.86468 1.68903 1.24806 1.56164 0.93526 0.77390 0.76587 0.83328 1.21178 0.99909 0.97342 0.99085 1.21259 0.95653 0.98011 0.94327 1.21558 0.95684 1.01495 1.04193 1.23421 0.97661 1.01222 0.94539 0.92012 0.91984 0.85455 0.88315 0.88389 0.74474 0.85583 0.85819 0.91648 0.91383 0.85608 0.87633 0.75433 1.22684 1.21085 0.83468 0.82859 0.84423 0.89173 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.71 10.56 -51.38 -0.54 -1.25 16 3 C 0.47 1.10 7.49 71.24 0.53 1.63 16 4 O -0.54 -4.37 15.66 21.95 0.34 -4.03 16 5 C -0.11 0.44 4.26 -11.01 -0.05 0.39 16 6 H 0.15 -1.19 8.14 -2.39 -0.02 -1.21 16 7 C -0.12 0.62 7.15 31.12 0.22 0.84 16 8 C 0.13 -0.55 4.24 45.51 0.19 -0.36 16 9 H 0.12 -0.27 7.46 -2.39 -0.02 -0.28 16 10 N -0.71 3.59 5.35 -440.05 -2.36 1.23 16 11 C 0.52 -0.29 7.83 87.66 0.69 0.39 16 12 O -0.58 -4.40 15.58 -3.02 -0.05 -4.45 16 13 C -0.14 0.58 6.07 29.85 0.18 0.76 16 14 C 0.07 0.06 4.03 71.98 0.29 0.35 16 15 O -0.33 -1.48 10.14 -92.49 -0.94 -2.41 16 16 C 0.12 0.62 6.69 22.50 0.15 0.77 16 17 C -0.14 -0.74 9.55 22.36 0.21 -0.53 16 18 C -0.08 -0.18 5.39 -19.88 -0.11 -0.29 16 19 C -0.08 -0.07 2.82 71.24 0.20 0.13 16 20 O -0.56 -0.89 12.76 -148.98 -1.90 -2.79 16 21 Si 0.79 -1.48 29.79 68.60 2.04 0.56 16 22 C -0.16 0.05 8.67 22.28 0.19 0.24 16 23 C -0.07 0.00 10.04 22.25 0.22 0.23 16 24 C -0.21 -0.58 9.04 22.37 0.20 -0.37 16 25 C -0.13 0.59 7.43 31.12 0.23 0.82 16 26 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 27 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 28 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.10 -0.35 7.43 -2.38 -0.02 -0.37 16 31 H 0.42 -4.12 8.73 -92.71 -0.81 -4.93 16 32 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 33 H 0.12 -0.91 8.14 -2.39 -0.02 -0.93 16 34 H 0.07 0.13 7.62 -2.39 -0.02 0.11 16 35 H 0.07 0.11 7.62 -2.39 -0.02 0.09 16 36 H 0.13 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.11 0.24 7.96 -2.39 -0.02 0.22 16 38 H 0.40 -2.61 8.70 -74.05 -0.64 -3.25 16 39 H -0.30 -1.63 7.11 99.48 0.71 -0.92 16 40 H -0.28 -0.70 7.11 99.48 0.71 0.00 16 41 H 0.15 -0.72 4.87 -2.91 -0.01 -0.73 16 42 H 0.15 -0.79 8.06 -2.91 -0.02 -0.81 16 43 H 0.14 0.14 6.30 -2.91 -0.02 0.12 16 44 H 0.09 -0.36 8.10 -2.39 -0.02 -0.38 16 45 H 0.09 -0.43 8.14 -2.38 -0.02 -0.45 16 Total: 0.00 -23.55 381.32 0.78 -22.77 By element: Atomic # 1 Polarization: -15.42 SS G_CDS: -0.38 Total: -15.80 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.56 Total: 6.17 kcal Atomic # 7 Polarization: 3.59 SS G_CDS: -2.36 Total: 1.23 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -3.08 Total: -14.93 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: 2.04 Total: 0.56 kcal Total: -23.55 0.78 -22.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_4549614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.494 kcal (2) G-P(sol) polarization free energy of solvation -23.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds