Wall clock time and date at job start Sat Mar 6 2021 15:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99810 * 2 1 4 4 O 1.20832 * 120.00534 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00137 * 179.97438 * 3 2 1 6 6 H 1.09005 * 112.85029 * 311.20253 * 5 3 2 7 7 C 1.53789 * 113.61410 * 82.50222 * 5 3 2 8 8 C 1.53779 * 87.07940 * 139.98234 * 7 5 3 9 9 H 1.09002 * 113.68981 * 89.12779 * 8 7 5 10 10 N 1.46496 * 113.61716 * 220.01745 * 8 7 5 11 11 C 1.34777 * 120.00258 * 252.50494 * 10 8 7 12 12 O 1.21279 * 120.00166 * 359.97438 * 11 10 8 13 13 C 1.50706 * 119.99762 * 179.97438 * 11 10 8 14 14 C 1.53002 * 109.46925 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47340 * 180.02562 * 14 13 11 16 16 O 1.42897 * 109.47253 * 180.02562 * 15 14 13 17 17 C 1.35904 * 117.00077 * 179.97438 * 16 15 14 18 18 C 1.38709 * 120.05812 * 179.72463 * 17 16 15 19 19 C 1.38166 * 119.94369 * 179.76982 * 18 17 16 20 20 C 1.50698 * 119.97088 * 180.23258 * 19 18 17 21 21 O 1.42906 * 109.47264 * 300.25171 * 20 19 18 22 22 Si 1.86296 * 109.47164 * 180.25335 * 20 19 18 23 23 C 1.38240 * 120.05542 * 0.47962 * 19 18 17 24 24 C 1.38292 * 120.11135 * 359.77309 * 23 19 18 25 25 C 1.38120 * 120.05478 * 359.97438 * 24 23 19 26 26 C 1.53781 * 87.08570 * 334.56897 * 8 7 5 27 27 H 1.09000 * 109.47265 * 299.99879 * 1 2 3 28 28 H 1.09008 * 109.47163 * 59.99606 * 1 2 3 29 29 H 1.09001 * 109.46996 * 179.97438 * 1 2 3 30 30 H 1.09000 * 113.61119 * 25.44095 * 7 5 3 31 31 H 1.08994 * 113.61563 * 254.53731 * 7 5 3 32 32 H 0.96999 * 119.99694 * 72.49884 * 10 8 7 33 33 H 1.09000 * 109.47318 * 299.99141 * 13 11 10 34 34 H 1.09000 * 109.47161 * 59.99772 * 13 11 10 35 35 H 1.09004 * 109.46930 * 299.99901 * 14 13 11 36 36 H 1.09004 * 109.47059 * 59.99503 * 14 13 11 37 37 H 1.09004 * 109.46785 * 299.99692 * 15 14 13 38 38 H 1.09000 * 109.47196 * 59.99588 * 15 14 13 39 39 H 1.08007 * 120.02438 * 359.97438 * 18 17 16 40 40 H 1.08997 * 109.47685 * 60.24673 * 20 19 18 41 41 H 0.96706 * 113.99798 * 300.00506 * 21 20 19 42 42 H 1.48501 * 110.00170 * 58.67771 * 22 20 19 43 43 H 1.48499 * 110.00261 * 179.97438 * 22 20 19 44 44 H 1.08000 * 119.94192 * 179.74632 * 23 19 18 45 45 H 1.08001 * 119.96642 * 179.97438 * 24 23 19 46 46 H 1.08002 * 120.02630 * 179.97438 * 25 24 23 47 47 H 1.08997 * 113.61529 * 139.97700 * 26 8 7 48 48 H 1.08994 * 113.61503 * 270.88294 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0233 0.6365 0.7567 7 6 4.1917 1.1233 -1.3962 8 6 5.1813 2.2267 -0.9866 9 1 6.0816 1.8495 -0.5013 10 7 5.4709 3.1828 -2.0582 11 6 6.6691 3.1613 -2.6749 12 8 7.5078 2.3509 -2.3425 13 6 6.9666 4.1445 -3.7776 14 6 8.3839 3.9079 -4.3032 15 6 8.6862 4.9064 -5.4223 16 8 10.0097 4.6849 -5.9135 17 6 10.4383 5.4935 -6.9183 18 6 11.7145 5.3379 -7.4390 19 6 12.1460 6.1581 -8.4636 20 6 13.5305 5.9861 -9.0334 21 8 14.4983 6.1786 -7.9997 22 14 13.8065 7.2395 -10.3837 23 6 11.3107 7.1398 -8.9632 24 6 10.0398 7.3004 -8.4422 25 6 9.6018 6.4796 -7.4214 26 6 4.1077 2.7143 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5243 1.4146 -2.2073 31 1 4.6620 0.1540 -1.5611 32 1 4.8002 3.8312 -2.3239 33 1 6.2508 4.0088 -4.5884 34 1 6.8881 5.1602 -3.3898 35 1 9.0995 4.0439 -3.4923 36 1 8.4628 2.8921 -4.6908 37 1 7.9706 4.7708 -6.2333 38 1 8.6074 5.9219 -5.0342 39 1 12.3690 4.5739 -7.0459 40 1 13.6324 4.9815 -9.4438 41 1 14.4656 7.0531 -7.5882 42 1 13.6391 8.6128 -9.8439 43 1 15.1687 7.0808 -10.9534 44 1 11.6514 7.7826 -9.7614 45 1 9.3892 8.0684 -8.8340 46 1 8.6093 6.6057 -7.0146 47 1 4.5104 3.0293 0.9632 48 1 3.4174 3.4404 -0.4287 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_4549616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:36:15 Heat of formation + Delta-G solvation = -143.070154 kcal Electronic energy + Delta-G solvation = -28911.743937 eV Core-core repulsion = 24513.537183 eV Total energy + Delta-G solvation = -4398.206754 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.00527 -41.28547 -40.87233 -39.35656 -39.08446 -37.46498 -37.40284 -34.90126 -34.49942 -32.46070 -31.24399 -29.53332 -28.45953 -26.97060 -26.83901 -26.46572 -23.81648 -23.58710 -22.36188 -21.82886 -21.49584 -20.60400 -19.22017 -18.97715 -18.14668 -18.00435 -17.88129 -17.48336 -17.42892 -17.15753 -16.86944 -16.45478 -16.38449 -16.21605 -16.07229 -15.51289 -15.08646 -14.80872 -14.75006 -14.41346 -14.33867 -14.16186 -14.09859 -13.65874 -13.55764 -13.33746 -13.22800 -13.08175 -12.99909 -12.73614 -12.48265 -12.35504 -12.30370 -12.27655 -11.94109 -11.86782 -11.81603 -11.59432 -11.55137 -11.44302 -10.93366 -10.68248 -10.10589 -9.91195 -9.23491 -4.90746 0.22485 0.42104 1.03976 1.29816 1.58909 1.62230 1.64410 1.93268 2.03238 2.42958 2.68830 3.23276 3.31768 3.39820 3.61636 3.65012 3.67942 3.74568 3.85813 3.89864 3.99362 4.00564 4.12414 4.21489 4.24821 4.26322 4.27476 4.35848 4.42370 4.44861 4.52084 4.56806 4.57451 4.62466 4.66012 4.67526 4.70644 4.81532 4.90851 5.00209 5.02387 5.09978 5.18467 5.30180 5.31657 5.39885 5.46326 5.50365 5.75851 6.44110 6.46048 6.51531 6.62981 7.22817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.107 4.107 6 H 0.148 0.852 7 C -0.129 4.129 8 C 0.123 3.877 9 H 0.112 0.888 10 N -0.710 5.710 11 C 0.511 3.489 12 O -0.586 6.586 13 C -0.129 4.129 14 C -0.102 4.102 15 C 0.057 3.943 16 O -0.339 6.339 17 C 0.116 3.884 18 C -0.152 4.152 19 C -0.082 4.082 20 C -0.092 4.092 21 O -0.551 6.551 22 Si 0.782 3.218 23 C -0.160 4.160 24 C -0.073 4.073 25 C -0.206 4.206 26 C -0.118 4.118 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.418 0.582 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.386 0.614 42 H -0.278 1.278 43 H -0.304 1.304 44 H 0.148 0.852 45 H 0.159 0.841 46 H 0.153 0.847 47 H 0.096 0.904 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 3.125 -2.559 8.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.127 4.127 6 H 0.166 0.834 7 C -0.168 4.168 8 C 0.018 3.982 9 H 0.130 0.870 10 N -0.362 5.362 11 C 0.300 3.700 12 O -0.465 6.465 13 C -0.168 4.168 14 C -0.140 4.140 15 C -0.017 4.017 16 O -0.253 6.253 17 C 0.071 3.929 18 C -0.171 4.171 19 C -0.083 4.083 20 C -0.200 4.200 21 O -0.359 6.359 22 Si 0.687 3.313 23 C -0.177 4.177 24 C -0.091 4.091 25 C -0.224 4.224 26 C -0.156 4.156 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.145 0.855 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.255 0.745 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.235 0.765 42 H -0.205 1.205 43 H -0.233 1.233 44 H 0.165 0.835 45 H 0.177 0.823 46 H 0.171 0.829 47 H 0.115 0.885 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.204 2.736 -2.637 7.275 hybrid contribution -0.200 0.306 1.368 1.416 sum -6.404 3.042 -1.269 7.203 Atomic orbital electron populations 1.23531 0.74996 1.05585 1.02509 1.86525 1.24815 1.33265 1.83465 1.23974 0.92467 0.81006 0.70965 1.90665 1.67855 1.37283 1.46733 1.22445 0.85978 1.01807 1.02441 0.83392 1.23414 0.97697 1.01173 0.94488 1.22353 0.97372 0.89981 0.88513 0.87049 1.45895 1.16335 1.36966 1.36961 1.21181 0.81255 0.84430 0.83149 1.90736 1.47948 1.41375 1.66477 1.21550 0.97508 1.00255 0.97525 1.21154 0.96551 0.99191 0.97085 1.22998 0.81266 1.00350 0.97082 1.86054 1.34272 1.55820 1.49180 1.19203 0.93800 0.91082 0.88851 1.20320 0.94411 1.02732 0.99618 1.20138 0.96562 0.95616 0.95971 1.25433 0.85249 1.11816 0.97515 1.86576 1.56875 1.39521 1.52900 0.93898 0.81952 0.74672 0.80829 1.21185 0.95212 0.99296 1.02045 1.21307 0.95546 0.98006 0.94204 1.21606 1.01452 0.97945 1.01403 1.23322 0.96560 0.94548 1.01180 0.91971 0.91920 0.85499 0.88971 0.89235 0.74456 0.85444 0.85477 0.92170 0.92048 0.89774 0.89966 0.86640 0.86140 0.76478 1.20474 1.23266 0.83486 0.82347 0.82917 0.88513 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.76 10.57 -51.37 -0.54 -1.30 16 3 C 0.47 1.15 7.48 71.24 0.53 1.69 16 4 O -0.54 -4.23 15.65 21.95 0.34 -3.89 16 5 C -0.11 0.38 4.26 -11.01 -0.05 0.33 16 6 H 0.15 -1.02 8.14 -2.38 -0.02 -1.04 16 7 C -0.13 0.49 7.43 31.12 0.23 0.72 16 8 C 0.12 -0.42 4.24 45.52 0.19 -0.22 16 9 H 0.11 -0.02 7.46 -2.39 -0.02 -0.04 16 10 N -0.71 3.49 5.35 -440.04 -2.36 1.13 16 11 C 0.51 0.00 7.83 87.66 0.69 0.68 16 12 O -0.59 -6.10 15.58 -3.03 -0.05 -6.15 16 13 C -0.13 0.93 5.70 29.85 0.17 1.10 16 14 C -0.10 0.06 4.87 30.59 0.15 0.21 16 15 C 0.06 -0.15 4.74 71.98 0.34 0.19 16 16 O -0.34 -1.97 10.14 -92.47 -0.94 -2.91 16 17 C 0.12 0.55 6.69 22.51 0.15 0.70 16 18 C -0.15 -0.95 9.55 22.37 0.21 -0.74 16 19 C -0.08 -0.20 5.39 -19.88 -0.11 -0.30 16 20 C -0.09 -0.14 2.82 71.24 0.20 0.06 16 21 O -0.55 -2.89 12.76 -148.98 -1.90 -4.79 16 22 Si 0.78 -1.30 29.79 68.60 2.04 0.74 16 23 C -0.16 0.21 8.67 22.28 0.19 0.41 16 24 C -0.07 0.21 10.04 22.25 0.22 0.43 16 25 C -0.21 0.18 9.04 22.36 0.20 0.38 16 26 C -0.12 0.56 7.16 31.12 0.22 0.78 16 27 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 28 H 0.06 -0.10 8.14 -2.38 -0.02 -0.12 16 29 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 30 H 0.09 -0.35 8.09 -2.39 -0.02 -0.37 16 31 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.42 -4.45 8.73 -92.71 -0.81 -5.26 16 33 H 0.13 -1.60 8.14 -2.39 -0.02 -1.62 16 34 H 0.13 -1.58 8.14 -2.39 -0.02 -1.60 16 35 H 0.06 0.24 8.10 -2.38 -0.02 0.22 16 36 H 0.06 0.24 8.10 -2.39 -0.02 0.22 16 37 H 0.08 -0.56 7.66 -2.38 -0.02 -0.58 16 38 H 0.08 -0.53 7.66 -2.39 -0.02 -0.55 16 39 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.12 0.08 7.96 -2.39 -0.02 0.07 16 41 H 0.39 -0.26 8.70 -74.05 -0.64 -0.91 16 42 H -0.28 -0.38 7.11 99.48 0.71 0.33 16 43 H -0.30 -1.88 7.11 99.48 0.71 -1.17 16 44 H 0.15 -0.85 4.87 -2.91 -0.01 -0.87 16 45 H 0.16 -1.39 8.06 -2.91 -0.02 -1.41 16 46 H 0.15 -0.97 6.30 -2.91 -0.02 -0.99 16 47 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 48 H 0.10 -0.37 7.41 -2.39 -0.02 -0.39 16 Total: 0.00 -27.62 402.80 0.93 -26.69 By element: Atomic # 1 Polarization: -16.65 SS G_CDS: -0.42 Total: -17.07 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 4.75 Total: 7.55 kcal Atomic # 7 Polarization: 3.49 SS G_CDS: -2.36 Total: 1.13 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -3.09 Total: -19.03 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: 2.04 Total: 0.74 kcal Total: -27.62 0.93 -26.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_4549616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.385 kcal (2) G-P(sol) polarization free energy of solvation -27.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds