Wall clock time and date at job start Sat Mar 6 2021 15:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34238 * 116.99588 * 2 1 4 4 O 1.20827 * 119.99520 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99938 * 179.97438 * 3 2 1 6 6 H 1.08999 * 112.84903 * 48.80896 * 5 3 2 7 7 C 1.53778 * 113.61154 * 179.97438 * 5 3 2 8 8 C 1.53787 * 87.08035 * 139.98353 * 7 5 3 9 9 H 1.09004 * 113.61202 * 89.11582 * 8 7 5 10 10 N 1.46496 * 113.61566 * 220.01945 * 8 7 5 11 11 C 1.34776 * 120.00015 * 205.00016 * 10 8 7 12 12 O 1.21280 * 119.99898 * 359.97438 * 11 10 8 13 13 C 1.50704 * 120.00197 * 180.02562 * 11 10 8 14 14 O 1.42896 * 109.47006 * 179.97438 * 13 11 10 15 15 C 1.35903 * 116.99812 * 179.97438 * 14 13 11 16 16 C 1.38711 * 120.05288 * 179.72352 * 15 14 13 17 17 C 1.38178 * 119.93996 * 179.72331 * 16 15 14 18 18 C 1.50692 * 119.97191 * 180.27827 * 17 16 15 19 19 O 1.42904 * 109.47042 * 65.25325 * 18 17 16 20 20 Si 1.86301 * 109.47222 * 185.25384 * 18 17 16 21 21 C 1.38247 * 120.05224 * 0.53253 * 17 16 15 22 22 C 1.38288 * 120.11386 * 359.76933 * 21 17 16 23 23 C 1.38125 * 120.05694 * 359.95362 * 22 21 17 24 24 C 1.53778 * 113.61544 * 277.50006 * 5 3 2 25 25 H 1.09000 * 109.47751 * 299.99642 * 1 2 3 26 26 H 1.09004 * 109.47358 * 60.00471 * 1 2 3 27 27 H 1.09006 * 109.47104 * 179.97438 * 1 2 3 28 28 H 1.08998 * 113.61879 * 25.43835 * 7 5 3 29 29 H 1.08999 * 113.61887 * 254.52942 * 7 5 3 30 30 H 0.96998 * 120.00377 * 24.99850 * 10 8 7 31 31 H 1.09003 * 109.46837 * 299.99928 * 13 11 10 32 32 H 1.09000 * 109.47088 * 59.99953 * 13 11 10 33 33 H 1.07996 * 120.03346 * 0.02562 * 16 15 14 34 34 H 1.08997 * 109.47439 * 305.25768 * 18 17 16 35 35 H 0.96704 * 113.99906 * 179.97438 * 19 18 17 36 36 H 1.48498 * 110.00088 * 178.68137 * 20 18 17 37 37 H 1.48501 * 109.99843 * 300.00282 * 20 18 17 38 38 H 1.07999 * 119.93983 * 179.74477 * 21 17 16 39 39 H 1.07993 * 119.97019 * 179.97438 * 22 21 17 40 40 H 1.07997 * 120.03005 * 180.02562 * 23 22 21 41 41 H 1.08993 * 113.61229 * 105.47308 * 24 5 3 42 42 H 1.09000 * 113.61263 * 334.56958 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2093 -0.0005 5 6 3.5662 1.2751 0.0006 6 1 4.0239 0.6365 -0.7550 7 6 4.1075 2.7144 -0.0001 8 6 5.1805 2.2278 0.9882 9 1 6.0805 1.8489 0.5039 10 7 5.4690 3.1846 2.0593 11 6 6.6668 3.1638 2.6769 12 8 7.5055 2.3526 2.3463 13 6 6.9635 4.1478 3.7792 14 8 8.2864 3.9265 4.2719 15 6 8.7143 4.7361 5.2760 16 6 9.9858 4.5731 5.8058 17 6 10.4205 5.4014 6.8229 18 6 11.8041 5.2290 7.3947 19 8 12.7754 5.5328 6.3915 20 14 12.0255 6.3803 8.8425 21 6 9.5854 6.3846 7.3197 22 6 8.3150 6.5451 6.7974 23 6 7.8778 5.7234 5.7769 24 6 4.1905 1.1240 1.3978 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.4169 3.4409 0.4281 29 1 4.5109 3.0288 -0.9627 30 1 4.7981 3.8332 2.3240 31 1 6.8852 5.1632 3.3905 32 1 6.2470 4.0126 4.5894 33 1 10.6372 3.8027 5.4205 34 1 11.9344 4.1989 7.7263 35 1 13.6907 5.4432 6.6903 36 1 13.3748 6.1973 9.4352 37 1 11.8503 7.7880 8.4034 38 1 9.9255 7.0283 8.1175 39 1 7.6644 7.3136 7.1876 40 1 6.8857 5.8493 5.3690 41 1 4.6609 0.1548 1.5633 42 1 3.5225 1.4154 2.2083 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10970304_4860298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:36:47 Heat of formation + Delta-G solvation = -123.711239 kcal Electronic energy + Delta-G solvation = -25812.185558 eV Core-core repulsion = 21725.893507 eV Total energy + Delta-G solvation = -4086.292050 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.03846 -41.45123 -40.66955 -39.40365 -38.64359 -37.39303 -37.30159 -34.71380 -32.59021 -31.69768 -29.88176 -29.03664 -27.00002 -26.96664 -26.50630 -23.63803 -23.09985 -22.11325 -21.63249 -20.73799 -19.21406 -18.96980 -18.52273 -18.19789 -17.95964 -17.49052 -17.40873 -17.32170 -16.98221 -16.36000 -16.30005 -15.79668 -15.54805 -15.49352 -14.89540 -14.53783 -14.48555 -14.30329 -14.04240 -13.81770 -13.75185 -13.69576 -13.48386 -13.30745 -13.08060 -12.66382 -12.48068 -12.42800 -12.15362 -11.97984 -11.93865 -11.82953 -11.65402 -11.41785 -10.91841 -10.52110 -10.25384 -9.89070 -9.23676 -4.96372 0.22581 0.43974 1.09428 1.23921 1.37680 1.42626 1.59716 1.71315 1.95154 2.54526 2.65030 3.09257 3.16681 3.34466 3.42909 3.50368 3.61582 3.74080 3.78814 3.89101 3.89895 3.92118 4.06029 4.12344 4.19797 4.22250 4.25250 4.34149 4.40404 4.46918 4.52981 4.55584 4.62696 4.65682 4.73815 4.92076 4.99527 5.24720 5.28810 5.34928 5.37698 5.49143 5.66392 6.20613 6.36683 6.44191 6.67741 7.02938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.505 6.505 5 C -0.109 4.109 6 H 0.133 0.867 7 C -0.126 4.126 8 C 0.127 3.873 9 H 0.126 0.874 10 N -0.717 5.717 11 C 0.518 3.482 12 O -0.510 6.510 13 C 0.040 3.960 14 O -0.288 6.288 15 C 0.128 3.872 16 C -0.119 4.119 17 C -0.033 4.033 18 C -0.079 4.079 19 O -0.534 6.534 20 Si 0.689 3.311 21 C -0.152 4.152 22 C -0.072 4.072 23 C -0.206 4.206 24 C -0.134 4.134 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.405 0.595 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.381 0.619 36 H -0.261 1.261 37 H -0.255 1.255 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.091 0.909 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.071 0.039 2.795 4.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.315 3.685 4 O -0.393 6.393 5 C -0.129 4.129 6 H 0.150 0.850 7 C -0.164 4.164 8 C 0.022 3.978 9 H 0.144 0.856 10 N -0.371 5.371 11 C 0.303 3.697 12 O -0.383 6.383 13 C -0.039 4.039 14 O -0.201 6.201 15 C 0.083 3.917 16 C -0.138 4.138 17 C -0.033 4.033 18 C -0.188 4.188 19 O -0.342 6.342 20 Si 0.590 3.410 21 C -0.169 4.169 22 C -0.090 4.090 23 C -0.225 4.225 24 C -0.173 4.173 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.240 0.760 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.152 0.848 34 H 0.097 0.903 35 H 0.229 0.771 36 H -0.186 1.186 37 H -0.180 1.180 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.110 0.890 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.639 0.345 2.448 4.400 hybrid contribution 0.105 0.246 -0.598 0.656 sum -3.534 0.591 1.850 4.033 Atomic orbital electron populations 1.23334 0.75863 1.04083 1.02710 1.86524 1.23776 1.33233 1.83728 1.23460 0.91552 0.81445 0.72049 1.90684 1.66975 1.36445 1.45149 1.22304 0.87770 1.00985 1.01823 0.84951 1.23390 0.97051 0.95005 1.00993 1.22481 0.97986 0.89427 0.87868 0.85578 1.45758 1.15998 1.37470 1.37861 1.20091 0.82158 0.84682 0.82766 1.90789 1.45876 1.37985 1.63668 1.22466 0.85118 0.99514 0.96799 1.86165 1.30048 1.54811 1.49060 1.18997 0.93753 0.90441 0.88487 1.20248 0.93748 1.02106 0.97700 1.19023 0.93597 0.94969 0.95745 1.24859 0.87850 1.06887 0.99248 1.86606 1.18231 1.91672 1.37652 0.94957 0.85625 0.79398 0.81038 1.20929 0.95044 0.99031 1.01928 1.20879 0.95407 0.97902 0.94857 1.21288 1.00647 0.98888 1.01641 1.23471 0.97922 1.01264 0.94646 0.91756 0.91696 0.87789 0.87791 0.89136 0.76014 0.88658 0.88633 0.84759 0.90310 0.77139 1.18637 1.17963 0.85298 0.84996 0.85193 0.89013 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.55 101.05 1.07 1.03 16 2 O -0.36 -0.33 10.57 -39.28 -0.42 -0.74 16 3 C 0.47 0.47 7.48 36.00 0.27 0.74 16 4 O -0.51 -1.82 15.65 -18.75 -0.29 -2.11 16 5 C -0.11 0.20 4.26 -90.96 -0.39 -0.18 16 6 H 0.13 -0.45 8.14 -51.93 -0.42 -0.88 16 7 C -0.13 0.31 7.16 -25.92 -0.19 0.12 16 8 C 0.13 -0.23 4.24 -67.09 -0.28 -0.52 16 9 H 0.13 -0.08 7.47 -51.93 -0.39 -0.47 16 10 N -0.72 1.51 5.36 -52.99 -0.28 1.23 16 11 C 0.52 0.53 7.91 -10.98 -0.09 0.44 16 12 O -0.51 -3.01 16.10 -14.35 -0.23 -3.24 16 13 C 0.04 -0.04 5.22 36.01 0.19 0.15 16 14 O -0.29 -0.93 9.67 -39.35 -0.38 -1.31 16 15 C 0.13 0.32 6.69 -39.22 -0.26 0.06 16 16 C -0.12 -0.37 9.63 -39.43 -0.38 -0.75 16 17 C -0.03 -0.06 5.38 -104.64 -0.56 -0.63 16 18 C -0.08 -0.04 2.79 36.00 0.10 0.06 16 19 O -0.53 -1.04 12.81 -35.23 -0.45 -1.49 16 20 Si 0.69 -0.52 29.85 -169.99 -5.07 -5.59 16 21 C -0.15 -0.10 8.67 -39.56 -0.34 -0.45 16 22 C -0.07 0.01 10.04 -39.60 -0.40 -0.38 16 23 C -0.21 -0.03 9.04 -39.43 -0.36 -0.39 16 24 C -0.13 0.28 7.43 -25.90 -0.19 0.09 16 25 H 0.06 -0.07 8.13 -51.93 -0.42 -0.49 16 26 H 0.06 -0.06 8.13 -51.93 -0.42 -0.48 16 27 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 28 H 0.10 -0.20 7.41 -51.93 -0.38 -0.59 16 29 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 30 H 0.40 -2.00 8.73 -40.82 -0.36 -2.36 16 31 H 0.10 -0.31 7.66 -51.93 -0.40 -0.71 16 32 H 0.10 -0.34 7.66 -51.93 -0.40 -0.74 16 33 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.08 -0.09 7.96 -51.93 -0.41 -0.50 16 35 H 0.38 -0.84 8.74 45.56 0.40 -0.44 16 36 H -0.26 -0.32 7.11 56.52 0.40 0.09 16 37 H -0.25 -0.57 7.05 56.52 0.40 -0.17 16 38 H 0.13 -0.13 4.86 -52.49 -0.26 -0.39 16 39 H 0.13 -0.36 8.06 -52.49 -0.42 -0.78 16 40 H 0.13 -0.35 6.30 -52.49 -0.33 -0.68 16 41 H 0.09 -0.18 8.14 -51.93 -0.42 -0.61 16 42 H 0.09 -0.19 8.09 -51.93 -0.42 -0.61 16 LS Contribution 360.47 15.07 5.43 5.43 Total: 0.00 -11.63 360.47 -9.04 -20.66 By element: Atomic # 1 Polarization: -6.70 SS G_CDS: -5.53 Total: -12.23 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.81 Total: -0.61 kcal Atomic # 7 Polarization: 1.51 SS G_CDS: -0.28 Total: 1.23 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -1.77 Total: -8.89 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: -5.07 Total: -5.59 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -11.63 -9.04 -20.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_4860298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.047 kcal (2) G-P(sol) polarization free energy of solvation -11.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds