Wall clock time and date at job start Sat Mar 6 2021 15:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34238 * 116.99588 * 2 1 4 4 O 1.20827 * 119.99520 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99938 * 179.97438 * 3 2 1 6 6 H 1.08999 * 112.84903 * 48.80896 * 5 3 2 7 7 C 1.53778 * 113.61154 * 179.97438 * 5 3 2 8 8 C 1.53787 * 87.08035 * 139.98353 * 7 5 3 9 9 H 1.09004 * 113.61202 * 89.11582 * 8 7 5 10 10 N 1.46496 * 113.61566 * 220.01945 * 8 7 5 11 11 C 1.34776 * 120.00015 * 205.00016 * 10 8 7 12 12 O 1.21280 * 119.99898 * 359.97438 * 11 10 8 13 13 C 1.50704 * 120.00197 * 180.02562 * 11 10 8 14 14 O 1.42896 * 109.47006 * 179.97438 * 13 11 10 15 15 C 1.35903 * 116.99812 * 179.97438 * 14 13 11 16 16 C 1.38711 * 120.05288 * 179.72352 * 15 14 13 17 17 C 1.38178 * 119.93996 * 179.72331 * 16 15 14 18 18 C 1.50692 * 119.97191 * 180.27827 * 17 16 15 19 19 O 1.42904 * 109.47042 * 65.25325 * 18 17 16 20 20 Si 1.86301 * 109.47222 * 185.25384 * 18 17 16 21 21 C 1.38247 * 120.05224 * 0.53253 * 17 16 15 22 22 C 1.38288 * 120.11386 * 359.76933 * 21 17 16 23 23 C 1.38125 * 120.05694 * 359.95362 * 22 21 17 24 24 C 1.53778 * 113.61544 * 277.50006 * 5 3 2 25 25 H 1.09000 * 109.47751 * 299.99642 * 1 2 3 26 26 H 1.09004 * 109.47358 * 60.00471 * 1 2 3 27 27 H 1.09006 * 109.47104 * 179.97438 * 1 2 3 28 28 H 1.08998 * 113.61879 * 25.43835 * 7 5 3 29 29 H 1.08999 * 113.61887 * 254.52942 * 7 5 3 30 30 H 0.96998 * 120.00377 * 24.99850 * 10 8 7 31 31 H 1.09003 * 109.46837 * 299.99928 * 13 11 10 32 32 H 1.09000 * 109.47088 * 59.99953 * 13 11 10 33 33 H 1.07996 * 120.03346 * 0.02562 * 16 15 14 34 34 H 1.08997 * 109.47439 * 305.25768 * 18 17 16 35 35 H 0.96704 * 113.99906 * 179.97438 * 19 18 17 36 36 H 1.48498 * 110.00088 * 178.68137 * 20 18 17 37 37 H 1.48501 * 109.99843 * 300.00282 * 20 18 17 38 38 H 1.07999 * 119.93983 * 179.74477 * 21 17 16 39 39 H 1.07993 * 119.97019 * 179.97438 * 22 21 17 40 40 H 1.07997 * 120.03005 * 180.02562 * 23 22 21 41 41 H 1.08993 * 113.61229 * 105.47308 * 24 5 3 42 42 H 1.09000 * 113.61263 * 334.56958 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2093 -0.0005 5 6 3.5662 1.2751 0.0006 6 1 4.0239 0.6365 -0.7550 7 6 4.1075 2.7144 -0.0001 8 6 5.1805 2.2278 0.9882 9 1 6.0805 1.8489 0.5039 10 7 5.4690 3.1846 2.0593 11 6 6.6668 3.1638 2.6769 12 8 7.5055 2.3526 2.3463 13 6 6.9635 4.1478 3.7792 14 8 8.2864 3.9265 4.2719 15 6 8.7143 4.7361 5.2760 16 6 9.9858 4.5731 5.8058 17 6 10.4205 5.4014 6.8229 18 6 11.8041 5.2290 7.3947 19 8 12.7754 5.5328 6.3915 20 14 12.0255 6.3803 8.8425 21 6 9.5854 6.3846 7.3197 22 6 8.3150 6.5451 6.7974 23 6 7.8778 5.7234 5.7769 24 6 4.1905 1.1240 1.3978 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.4169 3.4409 0.4281 29 1 4.5109 3.0288 -0.9627 30 1 4.7981 3.8332 2.3240 31 1 6.8852 5.1632 3.3905 32 1 6.2470 4.0126 4.5894 33 1 10.6372 3.8027 5.4205 34 1 11.9344 4.1989 7.7263 35 1 13.6907 5.4432 6.6903 36 1 13.3748 6.1973 9.4352 37 1 11.8503 7.7880 8.4034 38 1 9.9255 7.0283 8.1175 39 1 7.6644 7.3136 7.1876 40 1 6.8857 5.8493 5.3690 41 1 4.6609 0.1548 1.5633 42 1 3.5225 1.4154 2.2083 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10970304_4860298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 15:36:46 Heat of formation + Delta-G solvation = -125.976696 kcal Electronic energy + Delta-G solvation = -25812.283795 eV Core-core repulsion = 21725.893507 eV Total energy + Delta-G solvation = -4086.390288 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.03823 -41.49368 -40.70563 -39.39369 -38.70544 -37.46798 -37.37729 -34.73442 -32.60502 -31.70600 -29.85848 -28.98256 -26.95168 -26.84584 -26.46993 -23.66390 -23.10697 -22.11360 -21.62318 -20.66982 -19.22101 -18.96201 -18.59397 -18.19588 -17.99239 -17.49548 -17.40708 -17.33581 -17.02521 -16.32624 -16.21467 -15.79054 -15.59180 -15.54319 -14.93349 -14.53905 -14.48480 -14.29244 -14.12360 -13.78418 -13.74389 -13.60110 -13.47411 -13.29475 -13.01725 -12.56668 -12.51577 -12.35520 -12.12933 -11.99539 -11.86179 -11.83313 -11.70227 -11.44463 -11.01641 -10.54949 -10.21380 -9.91893 -9.28653 -4.91843 0.20114 0.39130 1.04389 1.26245 1.38915 1.43056 1.61689 1.76510 1.94693 2.58990 2.63866 3.21726 3.29788 3.38379 3.52125 3.62622 3.74150 3.79544 3.83578 4.00629 4.01922 4.08360 4.13079 4.25282 4.25713 4.26929 4.28226 4.47193 4.49245 4.56238 4.62095 4.65522 4.68351 4.81251 4.91217 4.97599 5.03195 5.23176 5.31912 5.36357 5.41618 5.46561 5.68234 6.25840 6.43201 6.55725 6.63521 7.07264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.107 4.107 6 H 0.149 0.851 7 C -0.117 4.117 8 C 0.125 3.875 9 H 0.113 0.887 10 N -0.700 5.700 11 C 0.516 3.484 12 O -0.569 6.569 13 C 0.035 3.965 14 O -0.321 6.321 15 C 0.114 3.886 16 C -0.149 4.149 17 C -0.047 4.047 18 C -0.098 4.098 19 O -0.560 6.560 20 Si 0.781 3.219 21 C -0.161 4.161 22 C -0.071 4.071 23 C -0.202 4.202 24 C -0.129 4.129 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.421 0.579 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.395 0.605 36 H -0.287 1.287 37 H -0.293 1.293 38 H 0.145 0.855 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.091 0.909 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 0.990 3.548 6.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.126 4.126 6 H 0.167 0.833 7 C -0.155 4.155 8 C 0.020 3.980 9 H 0.131 0.869 10 N -0.354 5.354 11 C 0.303 3.697 12 O -0.447 6.447 13 C -0.042 4.042 14 O -0.235 6.235 15 C 0.069 3.931 16 C -0.168 4.168 17 C -0.048 4.048 18 C -0.205 4.205 19 O -0.370 6.370 20 Si 0.686 3.314 21 C -0.178 4.178 22 C -0.088 4.088 23 C -0.221 4.221 24 C -0.168 4.168 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.259 0.741 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.245 0.755 36 H -0.214 1.214 37 H -0.221 1.221 38 H 0.162 0.838 39 H 0.181 0.819 40 H 0.180 0.820 41 H 0.109 0.891 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.152 1.283 3.196 6.198 hybrid contribution 0.514 -0.065 -0.879 1.020 sum -4.638 1.217 2.317 5.326 Atomic orbital electron populations 1.23530 0.74996 1.05588 1.02512 1.86527 1.24810 1.33271 1.83469 1.23952 0.92433 0.81005 0.70977 1.90665 1.67828 1.37287 1.46707 1.22426 0.86033 1.01772 1.02401 0.83304 1.23335 0.96388 0.94660 1.01118 1.22432 0.97651 0.89803 0.88148 0.86861 1.45650 1.15452 1.37279 1.36979 1.20536 0.82097 0.84224 0.82882 1.90764 1.47808 1.40493 1.65624 1.22754 0.84208 1.00157 0.97102 1.86115 1.32176 1.55646 1.49534 1.19162 0.93969 0.91238 0.88717 1.20313 0.94548 1.02781 0.99186 1.19261 0.94462 0.95276 0.95768 1.25238 0.87211 1.08460 0.99587 1.86558 1.19561 1.91872 1.39052 0.93933 0.83329 0.75533 0.78643 1.21207 0.95529 0.98743 1.02361 1.21312 0.95299 0.98054 0.94178 1.21636 1.01554 0.97636 1.01242 1.23437 0.97610 1.01114 0.94623 0.91894 0.91987 0.85511 0.87904 0.88322 0.74074 0.85843 0.85500 0.86733 0.89201 0.75480 1.21409 1.22072 0.83815 0.81896 0.81991 0.89084 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.55 113.37 1.20 1.14 16 2 O -0.36 -0.66 10.57 -51.49 -0.54 -1.20 16 3 C 0.47 0.96 7.48 71.24 0.53 1.50 16 4 O -0.54 -4.00 15.65 21.96 0.34 -3.65 16 5 C -0.11 0.42 4.26 -11.02 -0.05 0.37 16 6 H 0.15 -1.09 8.14 -2.39 -0.02 -1.11 16 7 C -0.12 0.61 7.16 31.12 0.22 0.83 16 8 C 0.12 -0.44 4.24 45.54 0.19 -0.24 16 9 H 0.11 -0.03 7.47 -2.39 -0.02 -0.04 16 10 N -0.70 3.22 5.36 -439.96 -2.36 0.86 16 11 C 0.52 1.27 7.91 87.66 0.69 1.96 16 12 O -0.57 -7.84 16.10 16.01 0.26 -7.58 16 13 C 0.04 -0.09 5.22 71.24 0.37 0.28 16 14 O -0.32 -2.43 9.67 -73.42 -0.71 -3.14 16 15 C 0.11 0.65 6.69 22.51 0.15 0.80 16 16 C -0.15 -1.24 9.63 22.37 0.22 -1.03 16 17 C -0.05 -0.23 5.38 -19.88 -0.11 -0.34 16 18 C -0.10 -0.20 2.79 71.23 0.20 0.00 16 19 O -0.56 -3.04 12.81 -148.98 -1.91 -4.95 16 20 Si 0.78 -1.19 29.85 68.60 2.05 0.85 16 21 C -0.16 -0.14 8.67 22.28 0.19 0.05 16 22 C -0.07 0.15 10.04 22.25 0.22 0.38 16 23 C -0.20 0.23 9.04 22.37 0.20 0.44 16 24 C -0.13 0.54 7.43 31.13 0.23 0.77 16 25 H 0.06 -0.12 8.13 -2.39 -0.02 -0.14 16 26 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 27 H 0.13 -0.92 8.14 -2.38 -0.02 -0.94 16 28 H 0.10 -0.46 7.41 -2.39 -0.02 -0.48 16 29 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H 0.42 -4.73 8.73 -92.71 -0.81 -5.54 16 31 H 0.12 -1.05 7.66 -2.39 -0.02 -1.07 16 32 H 0.13 -1.17 7.66 -2.39 -0.02 -1.19 16 33 H 0.11 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.09 -0.09 7.96 -2.39 -0.02 -0.11 16 35 H 0.39 -1.22 8.74 -74.05 -0.65 -1.87 16 36 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 37 H -0.29 -1.40 7.05 99.48 0.70 -0.70 16 38 H 0.14 -0.43 4.86 -2.91 -0.01 -0.45 16 39 H 0.16 -1.41 8.06 -2.91 -0.02 -1.44 16 40 H 0.16 -1.39 6.30 -2.91 -0.02 -1.40 16 41 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.09 -0.42 8.09 -2.39 -0.02 -0.44 16 Total: 0.00 -30.02 360.47 1.25 -28.78 By element: Atomic # 1 Polarization: -16.52 SS G_CDS: -0.35 Total: -16.88 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 4.47 Total: 6.91 kcal Atomic # 7 Polarization: 3.22 SS G_CDS: -2.36 Total: 0.86 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -2.56 Total: -20.53 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: 2.05 Total: 0.85 kcal Total: -30.02 1.25 -28.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10970304_4860298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.198 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds